Wall clock time and date at job start Tue Mar 31 2020 23:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48498 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47118 * 299.99664 * 3 2 1 6 6 H 1.48502 * 109.47164 * 60.00121 * 3 2 1 7 7 C 1.38813 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99990 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46966 * 179.97438 * 10 9 7 12 12 H 1.08992 * 110.02040 * 306.39172 * 11 10 9 13 13 C 1.53876 * 110.06914 * 67.81117 * 11 10 9 14 14 C 1.54268 * 106.60029 * 119.30660 * 13 11 10 15 15 C 1.54893 * 104.19438 * 23.60785 * 14 13 11 16 16 H 1.08995 * 110.92020 * 80.44553 * 15 14 13 17 17 N 1.46500 * 110.75597 * 203.74573 * 15 14 13 18 18 C 1.34773 * 120.00209 * 268.32931 * 17 15 14 19 19 O 1.21558 * 119.99633 * 359.97438 * 18 17 15 20 20 C 1.47839 * 120.00418 * 179.97438 * 18 17 15 21 21 C 1.40025 * 120.56058 * 179.97438 * 20 18 17 22 22 C 1.38350 * 118.28879 * 179.72793 * 21 20 18 23 23 C 1.38358 * 119.30575 * 359.97438 * 22 21 20 24 24 C 1.50699 * 119.46138 * 180.02562 * 23 22 21 25 25 F 1.39893 * 109.46980 * 300.00071 * 24 23 22 26 26 F 1.39898 * 109.46900 * 60.00337 * 24 23 22 27 27 N 1.31932 * 121.07592 * 0.02593 * 23 22 21 28 28 C 1.31690 * 121.88195 * 359.94827 * 27 23 22 29 29 C 1.54264 * 110.03212 * 184.99695 * 11 10 9 30 30 H 0.96997 * 119.99875 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99731 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46808 * 59.99855 * 10 9 7 33 33 H 1.08999 * 109.47213 * 299.99976 * 10 9 7 34 34 H 1.09003 * 110.02845 * 238.58513 * 13 11 10 35 35 H 1.08996 * 110.03856 * 0.02562 * 13 11 10 36 36 H 1.09000 * 110.48707 * 264.92773 * 14 13 11 37 37 H 1.08999 * 110.48726 * 142.28171 * 14 13 11 38 38 H 0.97001 * 120.00187 * 88.32219 * 17 15 14 39 39 H 1.07996 * 120.85226 * 359.74660 * 21 20 18 40 40 H 1.08005 * 120.35092 * 180.02562 * 22 21 20 41 41 H 1.09007 * 109.46829 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.72173 * 180.02562 * 28 27 23 43 43 H 1.09007 * 110.48458 * 98.38002 * 29 11 10 44 44 H 1.09000 * 110.59796 * 335.79877 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3599 -4.7083 0.8258 13 6 0.3053 -4.8666 -1.3368 14 6 0.6248 -6.2334 -1.9769 15 6 1.0207 -7.1309 -0.7782 16 1 0.1360 -7.5026 -0.2613 17 7 1.8672 -8.2424 -1.2190 18 6 1.3083 -9.4188 -1.5656 19 8 0.1019 -9.5578 -1.5118 20 6 2.1624 -10.5403 -2.0110 21 6 1.5942 -11.7677 -2.3732 22 6 2.4370 -12.7833 -2.7885 23 6 3.8010 -12.5558 -2.8328 24 6 4.7221 -13.6594 -3.2852 25 9 4.5836 -14.7607 -2.4338 26 9 4.3927 -14.0355 -4.5918 27 7 4.3084 -11.3886 -2.4855 28 6 3.5478 -10.3913 -2.0841 29 6 1.8179 -6.1596 0.1274 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8905 33 1 2.6847 -3.7146 -0.8894 34 1 -0.7669 -4.7781 -1.1614 35 1 0.6455 -4.0611 -1.9875 36 1 1.4560 -6.1423 -2.6761 37 1 -0.2554 -6.6345 -2.4793 38 1 2.8299 -8.1316 -1.2617 39 1 0.5256 -11.9176 -2.3298 40 1 2.0343 -13.7434 -3.0760 41 1 5.7530 -13.3061 -3.2582 42 1 4.0003 -9.4502 -1.8083 43 1 1.8084 -6.5068 1.1607 44 1 2.8424 -6.0582 -0.2305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676932465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:00 Heat of formation + Delta-G solvation = -99.436057 kcal Electronic energy + Delta-G solvation = -27839.025253 eV Core-core repulsion = 23426.716080 eV Total energy + Delta-G solvation = -4412.309172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.62003 -47.60405 -41.25954 -39.76874 -38.11255 -35.02348 -33.80954 -33.36617 -32.62171 -31.06426 -28.81722 -28.45452 -27.11152 -24.51961 -24.49630 -23.51576 -22.24204 -21.31706 -20.82561 -19.26234 -18.73084 -18.26477 -17.91191 -17.85803 -17.12997 -16.86906 -16.07661 -15.63218 -15.57643 -15.35314 -14.95183 -14.61674 -14.55427 -14.14423 -13.97281 -13.96257 -13.81202 -13.45627 -13.42067 -13.15543 -13.05465 -12.82521 -12.12689 -11.93336 -11.87600 -11.61599 -11.14512 -10.89573 -10.84939 -10.71885 -10.63370 -10.56023 -10.40869 -10.14222 -10.09540 -10.00243 -9.90654 -9.69015 -9.27170 -8.88161 -6.92079 -5.77235 -3.05687 -0.20829 0.49312 2.26441 2.61440 2.71802 3.12321 3.42346 3.47872 3.50188 3.54796 3.69994 4.01177 4.07646 4.22948 4.35762 4.39053 4.55297 4.58133 4.64282 4.76238 4.85053 4.97015 5.22184 5.35006 5.43517 5.51263 5.54246 5.57096 5.63342 5.72004 5.77953 5.84570 6.01942 6.09282 6.23652 6.26885 6.35621 6.50140 6.63907 6.79969 6.91076 6.96489 7.11172 7.69457 7.77981 8.41878 9.53106 10.11858 10.46316 11.45684 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.027274 B = 0.001667 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.385595 B =16796.129005 C =17378.023432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.137 3.863 16 H 0.100 0.900 17 N -0.711 5.711 18 C 0.561 3.439 19 O -0.528 6.528 20 C -0.162 4.162 21 C -0.016 4.016 22 C -0.138 4.138 23 C 0.067 3.933 24 C 0.324 3.676 25 F -0.191 7.191 26 F -0.191 7.191 27 N -0.459 5.459 28 C 0.137 3.863 29 C -0.121 4.121 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.400 0.600 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.170 0.830 43 H 0.070 0.930 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.685 -29.545 -5.740 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.033 3.967 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.153 4.153 14 C -0.170 4.170 15 C 0.033 3.967 16 H 0.118 0.882 17 N -0.362 5.362 18 C 0.346 3.654 19 O -0.404 6.404 20 C -0.167 4.167 21 C -0.042 4.042 22 C -0.157 4.157 23 C -0.072 4.072 24 C 0.269 3.731 25 F -0.172 7.172 26 F -0.172 7.172 27 N -0.168 5.168 28 C -0.022 4.022 29 C -0.159 4.159 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.235 0.765 39 H 0.175 0.825 40 H 0.168 0.832 41 H 0.152 0.848 42 H 0.187 0.813 43 H 0.089 0.911 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.848 -29.430 -5.743 30.996 hybrid contribution -0.336 0.860 -0.014 0.923 sum 7.512 -28.571 -5.757 30.098 Atomic orbital electron populations 1.69667 1.05095 1.25510 1.57878 1.24743 0.95525 0.97691 1.03115 0.86127 0.78762 0.84180 0.77183 1.20592 1.21896 1.21883 1.19275 0.91040 0.84230 1.42483 0.91199 1.42375 1.05919 0.99953 1.89404 1.20736 0.93016 0.85369 0.97582 1.21870 0.97815 0.93726 0.98061 0.90626 1.22132 1.00325 0.96280 0.96589 1.22741 1.01434 0.95639 0.97221 1.22197 0.94049 0.84856 0.95600 0.88219 1.45978 1.10907 1.12228 1.67071 1.17940 0.87541 0.82208 0.77717 1.90817 1.14084 1.82558 1.52978 1.21244 0.95375 0.96263 1.03848 1.21809 1.01843 0.90261 0.90286 1.21947 0.93269 1.01141 0.99384 1.21718 0.92897 0.93866 0.98675 1.20122 0.99830 0.80454 0.72682 1.93046 1.97325 1.56030 1.70822 1.93049 1.94595 1.92160 1.37406 1.67239 1.40196 0.99414 1.09906 1.22988 0.89164 0.97223 0.92837 1.22624 0.99382 0.94649 0.99293 0.93578 0.78209 0.96551 0.96340 0.91807 0.90218 0.91464 0.91563 0.76488 0.82478 0.83229 0.84759 0.81310 0.91078 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.16 5.39 -59.90 -0.32 -18.48 16 10 C 0.16 3.07 5.28 -4.04 -0.02 3.05 16 11 C -0.10 -1.42 2.96 -89.50 -0.26 -1.69 16 12 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.12 -1.69 6.19 -25.61 -0.16 -1.85 16 14 C -0.13 -1.60 6.51 -25.07 -0.16 -1.76 16 15 C 0.14 1.49 3.27 -65.94 -0.22 1.27 16 16 H 0.10 1.22 7.54 -51.93 -0.39 0.83 16 17 N -0.71 -6.23 5.13 -52.82 -0.27 -6.51 16 18 C 0.56 5.76 7.78 -12.33 -0.10 5.66 16 19 O -0.53 -7.31 16.07 5.31 0.09 -7.22 16 20 C -0.16 -1.33 5.89 -104.82 -0.62 -1.94 16 21 C -0.02 -0.12 9.72 -38.87 -0.38 -0.49 16 22 C -0.14 -0.92 9.60 -39.50 -0.38 -1.30 16 23 C 0.07 0.49 6.28 -82.51 -0.52 -0.03 16 24 C 0.32 1.93 5.54 36.00 0.20 2.13 16 25 F -0.19 -1.36 17.25 2.25 0.04 -1.32 16 26 F -0.19 -1.38 17.25 2.25 0.04 -1.34 16 27 N -0.46 -3.58 10.23 -9.13 -0.09 -3.67 16 28 C 0.14 0.95 10.71 -17.13 -0.18 0.77 16 29 C -0.12 -1.34 5.98 -25.07 -0.15 -1.49 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.38 10.04 7.55 -40.82 -0.31 9.73 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.36 7.62 -51.93 -0.40 0.97 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 2.37 6.63 -40.82 -0.27 2.10 16 39 H 0.16 1.08 7.74 -52.49 -0.41 0.68 16 40 H 0.15 0.72 8.06 -52.48 -0.42 0.29 16 41 H 0.14 0.50 8.10 -51.93 -0.42 0.08 16 42 H 0.17 0.69 6.42 -52.49 -0.34 0.36 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.74 7.73 -51.93 -0.40 0.33 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -33.54 376.96 -8.19 -41.74 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.86 Total: 6.22 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.19 Total: -5.00 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.04 Total: -56.03 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.09 Total: -7.22 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.54 -8.19 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676932465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.699 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds