Wall clock time and date at job start Tue Mar 31 2020 23:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48498 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47118 * 299.99664 * 3 2 1 6 6 H 1.48502 * 109.47164 * 60.00121 * 3 2 1 7 7 C 1.38813 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99990 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46966 * 179.97438 * 10 9 7 12 12 H 1.08992 * 110.02040 * 306.39172 * 11 10 9 13 13 C 1.53876 * 110.06914 * 67.81117 * 11 10 9 14 14 C 1.54268 * 106.60029 * 119.30660 * 13 11 10 15 15 C 1.54893 * 104.19438 * 23.60785 * 14 13 11 16 16 H 1.08995 * 110.92020 * 80.44553 * 15 14 13 17 17 N 1.46500 * 110.75597 * 203.74573 * 15 14 13 18 18 C 1.34773 * 120.00209 * 268.32931 * 17 15 14 19 19 O 1.21558 * 119.99633 * 359.97438 * 18 17 15 20 20 C 1.47839 * 120.00418 * 179.97438 * 18 17 15 21 21 C 1.40025 * 120.56058 * 179.97438 * 20 18 17 22 22 C 1.38350 * 118.28879 * 179.72793 * 21 20 18 23 23 C 1.38358 * 119.30575 * 359.97438 * 22 21 20 24 24 C 1.50699 * 119.46138 * 180.02562 * 23 22 21 25 25 F 1.39893 * 109.46980 * 300.00071 * 24 23 22 26 26 F 1.39898 * 109.46900 * 60.00337 * 24 23 22 27 27 N 1.31932 * 121.07592 * 0.02593 * 23 22 21 28 28 C 1.31690 * 121.88195 * 359.94827 * 27 23 22 29 29 C 1.54264 * 110.03212 * 184.99695 * 11 10 9 30 30 H 0.96997 * 119.99875 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99731 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46808 * 59.99855 * 10 9 7 33 33 H 1.08999 * 109.47213 * 299.99976 * 10 9 7 34 34 H 1.09003 * 110.02845 * 238.58513 * 13 11 10 35 35 H 1.08996 * 110.03856 * 0.02562 * 13 11 10 36 36 H 1.09000 * 110.48707 * 264.92773 * 14 13 11 37 37 H 1.08999 * 110.48726 * 142.28171 * 14 13 11 38 38 H 0.97001 * 120.00187 * 88.32219 * 17 15 14 39 39 H 1.07996 * 120.85226 * 359.74660 * 21 20 18 40 40 H 1.08005 * 120.35092 * 180.02562 * 22 21 20 41 41 H 1.09007 * 109.46829 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.72173 * 180.02562 * 28 27 23 43 43 H 1.09007 * 110.48458 * 98.38002 * 29 11 10 44 44 H 1.09000 * 110.59796 * 335.79877 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3599 -4.7083 0.8258 13 6 0.3053 -4.8666 -1.3368 14 6 0.6248 -6.2334 -1.9769 15 6 1.0207 -7.1309 -0.7782 16 1 0.1360 -7.5026 -0.2613 17 7 1.8672 -8.2424 -1.2190 18 6 1.3083 -9.4188 -1.5656 19 8 0.1019 -9.5578 -1.5118 20 6 2.1624 -10.5403 -2.0110 21 6 1.5942 -11.7677 -2.3732 22 6 2.4370 -12.7833 -2.7885 23 6 3.8010 -12.5558 -2.8328 24 6 4.7221 -13.6594 -3.2852 25 9 4.5836 -14.7607 -2.4338 26 9 4.3927 -14.0355 -4.5918 27 7 4.3084 -11.3886 -2.4855 28 6 3.5478 -10.3913 -2.0841 29 6 1.8179 -6.1596 0.1274 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8905 33 1 2.6847 -3.7146 -0.8894 34 1 -0.7669 -4.7781 -1.1614 35 1 0.6455 -4.0611 -1.9875 36 1 1.4560 -6.1423 -2.6761 37 1 -0.2554 -6.6345 -2.4793 38 1 2.8299 -8.1316 -1.2617 39 1 0.5256 -11.9176 -2.3298 40 1 2.0343 -13.7434 -3.0760 41 1 5.7530 -13.3061 -3.2582 42 1 4.0003 -9.4502 -1.8083 43 1 1.8084 -6.5068 1.1607 44 1 2.8424 -6.0582 -0.2305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676932465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:59 Heat of formation + Delta-G solvation = -121.267411 kcal Electronic energy + Delta-G solvation = -27839.971931 eV Core-core repulsion = 23426.716080 eV Total energy + Delta-G solvation = -4413.255851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11779 -48.11030 -41.89555 -40.57408 -39.19271 -36.48784 -35.05871 -34.01400 -33.39605 -32.72043 -30.11793 -29.39720 -27.96008 -26.14696 -25.04678 -24.22122 -23.92266 -22.08217 -21.74822 -20.51008 -19.39689 -19.06327 -18.76992 -18.52065 -18.35472 -17.62786 -17.00759 -16.59400 -16.54723 -16.18388 -16.13813 -15.67184 -15.24842 -15.16344 -15.08268 -14.74921 -14.55333 -14.47626 -14.42868 -14.31799 -14.18438 -13.58976 -13.39333 -13.27904 -12.92007 -12.83008 -12.55291 -12.38752 -12.11573 -12.08104 -11.83989 -11.71371 -11.52488 -11.44848 -11.26543 -11.20803 -10.91137 -10.77366 -10.57893 -10.11908 -8.96491 -7.93824 -5.21876 -0.79297 -0.03596 1.48068 1.48621 1.56291 1.58696 1.91503 2.16503 2.50889 2.57255 3.11923 3.22764 3.40091 3.44105 3.56062 3.60142 3.63629 3.71980 3.81329 3.90084 3.92153 4.10452 4.22028 4.36015 4.39988 4.47149 4.51979 4.60131 4.68390 4.70546 4.80634 4.83239 4.94081 5.01957 5.12150 5.17702 5.20285 5.26273 5.42451 5.46368 5.53314 5.58112 6.29067 6.37857 6.44781 7.04383 7.35179 8.13630 8.35289 9.30059 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.027274 B = 0.001667 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.385595 B =16796.129005 C =17378.023432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.159 3.841 11 C -0.090 4.090 12 H 0.064 0.936 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.147 3.853 16 H 0.087 0.913 17 N -0.698 5.698 18 C 0.564 3.436 19 O -0.569 6.569 20 C -0.173 4.173 21 C -0.020 4.020 22 C -0.140 4.140 23 C 0.061 3.939 24 C 0.325 3.675 25 F -0.198 7.198 26 F -0.199 7.199 27 N -0.469 5.469 28 C 0.143 3.857 29 C -0.107 4.107 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.198 0.802 43 H 0.086 0.914 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.030 -30.751 -5.821 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.033 3.967 11 C -0.109 4.109 12 H 0.083 0.917 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.042 3.958 16 H 0.105 0.895 17 N -0.349 5.349 18 C 0.350 3.650 19 O -0.449 6.449 20 C -0.178 4.178 21 C -0.047 4.047 22 C -0.160 4.160 23 C -0.077 4.077 24 C 0.271 3.729 25 F -0.179 7.179 26 F -0.180 7.180 27 N -0.178 5.178 28 C -0.016 4.016 29 C -0.146 4.146 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.255 0.745 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.214 0.786 43 H 0.104 0.896 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.269 -30.674 -5.826 32.868 hybrid contribution -1.050 1.163 -0.007 1.566 sum 9.219 -29.511 -5.833 31.463 Atomic orbital electron populations 1.69825 1.06642 1.25896 1.59802 1.25572 0.96390 1.01141 1.03981 0.85081 0.78317 0.79863 0.76554 1.18878 1.22212 1.22170 1.19702 0.91564 0.85439 1.40686 0.90510 1.42619 1.05677 1.01303 1.89271 1.20929 0.93659 0.84475 0.97657 1.21762 0.97113 0.94379 0.97639 0.91742 1.22032 0.99702 0.97019 0.96334 1.22649 1.01641 0.94147 0.97712 1.21903 0.94020 0.85140 0.94722 0.89488 1.45771 1.11590 1.11216 1.66309 1.18198 0.87152 0.82722 0.76884 1.90803 1.15941 1.83276 1.54852 1.21106 0.95755 0.95746 1.05186 1.21932 1.02159 0.90447 0.90125 1.22131 0.93138 1.01619 0.99064 1.22009 0.93363 0.94166 0.98204 1.20338 1.00760 0.79788 0.72015 1.93032 1.97406 1.56437 1.71057 1.93034 1.94743 1.92207 1.37996 1.67310 1.40346 0.99709 1.10428 1.23385 0.88521 0.98019 0.91688 1.22520 0.99695 0.91942 1.00405 0.94120 0.79510 0.96061 0.95781 0.92725 0.92876 0.90384 0.92146 0.74493 0.82430 0.81665 0.82244 0.78574 0.89574 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.58 13.06 21.65 0.28 -59.29 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.38 9.99 84.03 0.84 -12.55 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -37.24 5.39 -343.44 -1.85 -39.10 16 10 C 0.16 5.92 5.28 86.38 0.46 6.38 16 11 C -0.09 -2.60 2.96 -10.07 -0.03 -2.63 16 12 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 13 C -0.11 -3.33 6.19 31.32 0.19 -3.14 16 14 C -0.12 -2.86 6.51 31.67 0.21 -2.65 16 15 C 0.15 2.93 3.27 46.28 0.15 3.08 16 16 H 0.09 2.04 7.54 -2.39 -0.02 2.02 16 17 N -0.70 -10.53 5.13 -439.30 -2.25 -12.78 16 18 C 0.56 10.75 7.78 86.79 0.68 11.43 16 19 O -0.57 -15.53 16.07 -3.90 -0.06 -15.59 16 20 C -0.17 -2.54 5.89 -19.99 -0.12 -2.66 16 21 C -0.02 -0.28 9.72 22.73 0.22 -0.06 16 22 C -0.14 -1.67 9.60 22.32 0.21 -1.46 16 23 C 0.06 0.77 6.28 42.57 0.27 1.04 16 24 C 0.33 3.26 5.54 71.24 0.39 3.66 16 25 F -0.20 -2.50 17.25 44.97 0.78 -1.73 16 26 F -0.20 -2.55 17.25 44.97 0.78 -1.77 16 27 N -0.47 -6.19 10.23 -182.81 -1.87 -8.06 16 28 C 0.14 1.61 10.71 85.03 0.91 2.52 16 29 C -0.11 -2.10 5.98 31.67 0.19 -1.91 16 30 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.37 20.01 7.55 -92.71 -0.70 19.31 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.85 7.62 -2.39 -0.02 1.83 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.42 3.46 6.63 -92.71 -0.61 2.84 16 39 H 0.16 2.12 7.74 -2.91 -0.02 2.10 16 40 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.16 0.79 8.10 -2.38 -0.02 0.77 16 42 H 0.20 0.89 6.42 -2.91 -0.02 0.87 16 43 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.09 1.51 7.73 -2.39 -0.02 1.49 16 Total: -1.00 -72.78 376.96 2.60 -70.18 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.26 Total: 23.19 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.04 Total: -3.01 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.69 Total: -119.23 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.06 Total: -15.59 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 1.55 Total: -3.50 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.78 2.60 -70.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676932465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.089 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds