Wall clock time and date at job start Tue Mar 31 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35496 * 126.98348 * 2 1 4 4 N 1.30518 * 107.31022 * 180.23230 * 3 2 1 5 5 N 1.28597 * 109.67225 * 359.77156 * 4 3 2 6 6 C 1.30520 * 109.67394 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.35127 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46951 * 90.02371 * 7 6 5 9 9 C 1.46903 * 110.99891 * 180.02562 * 8 7 6 10 10 H 1.09006 * 112.90951 * 336.24936 * 9 8 7 11 11 C 1.53779 * 113.61601 * 107.50218 * 9 8 7 12 12 C 1.53784 * 87.08045 * 139.98072 * 11 9 8 13 13 H 1.09004 * 113.61451 * 220.02152 * 12 11 9 14 14 C 1.52992 * 113.61673 * 89.11647 * 12 11 9 15 15 N 1.46503 * 109.47166 * 87.50094 * 14 12 11 16 16 C 1.34773 * 120.00036 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00231 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99980 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.47109 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00160 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99686 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00410 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47238 * 90.00139 * 24 22 20 26 26 H 1.48502 * 109.47509 * 210.00298 * 24 22 20 27 27 H 1.48507 * 109.47015 * 330.00349 * 24 22 20 28 28 C 1.53779 * 113.61075 * 205.00191 * 9 8 7 29 29 H 1.09005 * 109.46501 * 270.15467 * 1 2 3 30 30 H 1.08994 * 109.47120 * 30.14774 * 1 2 3 31 31 H 1.08999 * 109.47535 * 150.15548 * 1 2 3 32 32 H 1.07997 * 126.34379 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47090 * 330.02756 * 7 6 5 34 34 H 1.08996 * 109.47537 * 210.02738 * 7 6 5 35 35 H 1.00896 * 110.99898 * 56.05468 * 8 7 6 36 36 H 1.09002 * 113.61557 * 25.43184 * 11 9 8 37 37 H 1.09004 * 113.61501 * 254.52605 * 11 9 8 38 38 H 1.08996 * 109.47544 * 207.50317 * 14 12 11 39 39 H 1.09007 * 109.47088 * 327.50753 * 14 12 11 40 40 H 0.97004 * 120.00029 * 0.02562 * 15 14 12 41 41 H 1.08998 * 109.47564 * 299.99862 * 18 16 15 42 42 H 1.08995 * 109.47287 * 60.00243 * 18 16 15 43 43 H 0.96998 * 120.00377 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.61646 * 105.47091 * 28 9 8 45 45 H 1.08998 * 113.69354 * 334.57399 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0051 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 0.0023 7 6 1.8476 -2.5260 0.0054 8 7 1.7125 -2.9936 1.3915 9 6 1.2918 -4.4005 1.4338 10 1 0.7723 -4.7154 0.5287 11 6 2.4076 -5.3643 1.8707 12 6 1.3361 -6.1121 2.6817 13 1 1.6842 -6.4500 3.6579 14 6 0.6241 -7.2109 1.8903 15 7 1.3797 -8.4610 2.0021 16 6 0.9386 -9.5729 1.3812 17 8 -0.0836 -9.5384 0.7295 18 6 1.7161 -10.8587 1.4958 19 16 0.8745 -12.1583 0.5583 20 6 1.9676 -13.5077 0.8569 21 1 2.8462 -13.3657 1.4686 22 6 1.6988 -14.7534 0.3069 23 7 0.6276 -14.9265 -0.4382 24 14 2.8571 -16.1841 0.6240 25 1 2.4270 -16.9074 1.8476 26 1 2.8275 -17.1115 -0.5354 27 1 4.2379 -15.6707 0.8121 28 6 0.5594 -4.7857 2.7299 29 1 -0.3632 0.0028 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5114 32 1 1.9703 2.1169 -0.0004 33 1 2.5939 -3.1300 -0.5106 34 1 0.8889 -2.6192 -0.5046 35 1 1.0737 -2.4092 1.9096 36 1 3.1735 -4.8945 2.4877 37 1 2.8234 -5.9509 1.0514 38 1 -0.3790 -7.3556 2.2911 39 1 0.5580 -6.9189 0.8421 40 1 2.1975 -8.4885 2.5231 41 1 2.7193 -10.7137 1.0949 42 1 1.7824 -11.1511 2.5437 43 1 0.4395 -15.7971 -0.8224 44 1 -0.5167 -4.9051 2.6044 45 1 0.8190 -4.1584 3.5827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688921718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:09 Heat of formation + Delta-G solvation = 67.059545 kcal Electronic energy + Delta-G solvation = -25333.997522 eV Core-core repulsion = 21515.041279 eV Total energy + Delta-G solvation = -3818.956243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.54285 -40.14673 -38.78825 -36.01434 -35.23778 -33.85697 -32.42581 -31.14540 -29.71125 -28.30011 -27.20308 -26.17270 -25.62674 -25.28120 -22.86100 -22.79562 -21.31877 -20.36868 -19.21128 -17.78699 -17.65429 -17.13993 -16.70652 -16.26500 -16.17169 -15.72523 -15.41599 -15.12290 -15.06063 -14.79955 -14.45901 -14.09227 -13.92738 -13.68936 -13.51961 -13.25258 -13.00324 -12.66715 -12.60242 -12.58844 -12.11973 -11.92987 -11.70651 -11.21402 -11.05885 -11.02135 -10.88477 -10.75870 -10.72367 -10.70678 -10.58232 -9.81277 -9.72206 -9.40415 -9.06927 -9.02946 -8.86100 -8.23607 -6.49838 -6.21507 -3.92021 1.28638 1.92963 2.46601 3.03057 3.09997 3.22830 3.28379 3.32604 3.56297 3.69409 3.84131 3.94387 4.07852 4.12663 4.20896 4.29599 4.34286 4.38736 4.45118 4.49030 4.62541 4.87079 4.94224 5.13774 5.14872 5.17364 5.19082 5.33772 5.38688 5.41956 5.55570 5.59096 5.66473 5.78153 5.80002 5.85143 5.90886 6.00588 6.15131 6.30517 6.48819 6.62585 6.71553 7.59999 7.71714 8.33107 8.35585 8.61396 9.23959 10.85952 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.001507 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.580858 B =18573.285464 C =18798.946847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.478 5.478 3 C 0.148 3.852 4 N -0.297 5.297 5 N -0.274 5.274 6 C 0.178 3.822 7 C 0.146 3.854 8 N -0.667 5.667 9 C 0.057 3.943 10 H 0.080 0.920 11 C -0.120 4.120 12 C -0.124 4.124 13 H 0.088 0.912 14 C 0.139 3.861 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.218 0.782 33 H 0.111 0.889 34 H 0.051 0.949 35 H 0.339 0.661 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.072 0.928 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 32.142 5.222 32.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.170 5.170 3 C -0.139 4.139 4 N -0.136 5.136 5 N -0.115 5.115 6 C -0.090 4.090 7 C 0.015 3.985 8 N -0.299 5.299 9 C -0.053 4.053 10 H 0.098 0.902 11 C -0.158 4.158 12 C -0.143 4.143 13 H 0.107 0.893 14 C 0.015 3.985 15 N -0.392 5.392 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.304 4.304 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.169 4.169 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.235 0.765 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.995 31.945 4.053 32.263 hybrid contribution -0.164 -0.636 0.963 1.165 sum -2.159 31.309 5.015 31.782 Atomic orbital electron populations 1.22154 0.75368 1.05485 1.04379 1.46265 1.09183 1.06928 1.54603 1.26480 0.87289 0.94912 1.05212 1.74318 1.18035 1.03415 1.17879 1.74315 1.16997 1.02909 1.17249 1.24751 0.87391 0.91895 1.04942 1.20300 1.00925 0.85739 0.91560 1.60575 1.54654 1.03240 1.11457 1.23193 0.97216 0.87017 0.97843 0.90177 1.23123 0.96488 0.96232 0.99976 1.22434 0.97788 0.93972 1.00133 0.89347 1.21062 0.95010 0.82621 0.99803 1.45971 1.28863 1.09562 1.54761 1.20307 0.85320 0.84383 0.78213 1.90696 1.24361 1.84864 1.39534 1.23531 1.03458 0.97413 1.06019 1.85378 1.33917 1.00054 1.64131 1.22876 1.11869 0.96163 1.37472 0.90905 1.24989 0.95809 0.98269 0.94498 1.70017 1.25083 1.24156 1.31073 0.86166 0.80422 0.80897 0.78005 1.20275 1.20754 1.19679 1.23190 0.99472 0.96589 0.97690 0.89735 0.88671 0.89082 0.76516 0.87122 0.93124 0.84230 0.88852 0.91037 0.91493 0.91644 0.76704 0.89182 0.89217 0.92198 0.90933 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.06 11.04 59.85 0.66 0.72 16 2 N -0.48 -2.62 3.15 -122.69 -0.39 -3.00 16 3 C 0.15 0.99 12.74 -89.95 -1.15 -0.16 16 4 N -0.30 -3.39 12.21 29.69 0.36 -3.03 16 5 N -0.27 -3.36 12.21 32.80 0.40 -2.95 16 6 C 0.18 1.49 7.54 -154.98 -1.17 0.32 16 7 C 0.15 0.93 5.88 -4.97 -0.03 0.90 16 8 N -0.67 -4.18 6.55 -107.13 -0.70 -4.88 16 9 C 0.06 0.35 3.79 -66.90 -0.25 0.10 16 10 H 0.08 0.51 7.44 -51.93 -0.39 0.13 16 11 C -0.12 -0.90 7.41 -25.92 -0.19 -1.09 16 12 C -0.12 -0.90 3.94 -89.81 -0.35 -1.26 16 13 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 14 C 0.14 1.47 5.35 -4.04 -0.02 1.45 16 15 N -0.74 -9.40 5.56 -60.30 -0.33 -9.73 16 16 C 0.53 9.74 7.85 -10.99 -0.09 9.66 16 17 O -0.52 -11.65 15.86 5.56 0.09 -11.57 16 18 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.13 -0.75 7.24 -25.92 -0.19 -0.93 16 29 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.09 0.02 7.19 -51.93 -0.37 -0.36 16 32 H 0.22 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.21 7.20 -51.93 -0.37 -0.16 16 35 H 0.34 1.70 8.54 -39.29 -0.34 1.37 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.74 7.39 -51.93 -0.38 0.36 16 40 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -38.97 394.04 -10.31 -49.28 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.81 Total: -1.03 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.36 Total: -6.11 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.07 Total: -49.01 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.97 -10.31 -49.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688921718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.339 kcal (2) G-P(sol) polarization free energy of solvation -38.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds