Wall clock time and date at job start Tue Mar 31 2020 22:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35496 * 126.98348 * 2 1 4 4 N 1.30518 * 107.31022 * 180.23230 * 3 2 1 5 5 N 1.28597 * 109.67225 * 359.77156 * 4 3 2 6 6 C 1.30520 * 109.67394 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.35127 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46951 * 90.02371 * 7 6 5 9 9 C 1.46903 * 110.99891 * 180.02562 * 8 7 6 10 10 H 1.09006 * 112.90951 * 336.24936 * 9 8 7 11 11 C 1.53779 * 113.61601 * 107.50218 * 9 8 7 12 12 C 1.53784 * 87.08045 * 139.98072 * 11 9 8 13 13 H 1.09004 * 113.61451 * 220.02152 * 12 11 9 14 14 C 1.52992 * 113.61673 * 89.11647 * 12 11 9 15 15 N 1.46503 * 109.47166 * 87.50094 * 14 12 11 16 16 C 1.34773 * 120.00036 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00231 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99980 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.47109 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00160 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99686 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00410 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47238 * 90.00139 * 24 22 20 26 26 H 1.48502 * 109.47509 * 210.00298 * 24 22 20 27 27 H 1.48507 * 109.47015 * 330.00349 * 24 22 20 28 28 C 1.53779 * 113.61075 * 205.00191 * 9 8 7 29 29 H 1.09005 * 109.46501 * 270.15467 * 1 2 3 30 30 H 1.08994 * 109.47120 * 30.14774 * 1 2 3 31 31 H 1.08999 * 109.47535 * 150.15548 * 1 2 3 32 32 H 1.07997 * 126.34379 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47090 * 330.02756 * 7 6 5 34 34 H 1.08996 * 109.47537 * 210.02738 * 7 6 5 35 35 H 1.00896 * 110.99898 * 56.05468 * 8 7 6 36 36 H 1.09002 * 113.61557 * 25.43184 * 11 9 8 37 37 H 1.09004 * 113.61501 * 254.52605 * 11 9 8 38 38 H 1.08996 * 109.47544 * 207.50317 * 14 12 11 39 39 H 1.09007 * 109.47088 * 327.50753 * 14 12 11 40 40 H 0.97004 * 120.00029 * 0.02562 * 15 14 12 41 41 H 1.08998 * 109.47564 * 299.99862 * 18 16 15 42 42 H 1.08995 * 109.47287 * 60.00243 * 18 16 15 43 43 H 0.96998 * 120.00377 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.61646 * 105.47091 * 28 9 8 45 45 H 1.08998 * 113.69354 * 334.57399 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0051 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 0.0023 7 6 1.8476 -2.5260 0.0054 8 7 1.7125 -2.9936 1.3915 9 6 1.2918 -4.4005 1.4338 10 1 0.7723 -4.7154 0.5287 11 6 2.4076 -5.3643 1.8707 12 6 1.3361 -6.1121 2.6817 13 1 1.6842 -6.4500 3.6579 14 6 0.6241 -7.2109 1.8903 15 7 1.3797 -8.4610 2.0021 16 6 0.9386 -9.5729 1.3812 17 8 -0.0836 -9.5384 0.7295 18 6 1.7161 -10.8587 1.4958 19 16 0.8745 -12.1583 0.5583 20 6 1.9676 -13.5077 0.8569 21 1 2.8462 -13.3657 1.4686 22 6 1.6988 -14.7534 0.3069 23 7 0.6276 -14.9265 -0.4382 24 14 2.8571 -16.1841 0.6240 25 1 2.4270 -16.9074 1.8476 26 1 2.8275 -17.1115 -0.5354 27 1 4.2379 -15.6707 0.8121 28 6 0.5594 -4.7857 2.7299 29 1 -0.3632 0.0028 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5114 32 1 1.9703 2.1169 -0.0004 33 1 2.5939 -3.1300 -0.5106 34 1 0.8889 -2.6192 -0.5046 35 1 1.0737 -2.4092 1.9096 36 1 3.1735 -4.8945 2.4877 37 1 2.8234 -5.9509 1.0514 38 1 -0.3790 -7.3556 2.2911 39 1 0.5580 -6.9189 0.8421 40 1 2.1975 -8.4885 2.5231 41 1 2.7193 -10.7137 1.0949 42 1 1.7824 -11.1511 2.5437 43 1 0.4395 -15.7971 -0.8224 44 1 -0.5167 -4.9051 2.6044 45 1 0.8190 -4.1584 3.5827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688921718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:08 Heat of formation + Delta-G solvation = 38.633530 kcal Electronic energy + Delta-G solvation = -25335.230167 eV Core-core repulsion = 21515.041279 eV Total energy + Delta-G solvation = -3820.188888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.08712 -40.99171 -39.96506 -36.61328 -35.81745 -34.89157 -34.57614 -31.85431 -31.06575 -28.58199 -28.08376 -27.57914 -26.74612 -26.11540 -23.46087 -23.33483 -21.84176 -21.72429 -20.12850 -19.50365 -18.07216 -17.78176 -17.67959 -17.28065 -16.99176 -16.87171 -16.56500 -16.22243 -16.14688 -15.71490 -15.51161 -15.03462 -14.72943 -14.58031 -14.43906 -14.27406 -13.91546 -13.52305 -13.41353 -13.19661 -13.15926 -13.14957 -12.88579 -12.67614 -12.55572 -12.51735 -11.91710 -11.70274 -11.45322 -11.30781 -11.19448 -11.13690 -11.09930 -10.90970 -10.34543 -10.27188 -10.07726 -9.47915 -8.65853 -8.34265 -6.12140 0.80572 1.28122 1.42946 1.47912 1.58484 1.58602 1.63263 1.85394 2.26928 2.32542 2.99960 3.07930 3.32683 3.38203 3.55654 3.68873 3.73956 3.79536 3.85664 3.89623 3.99015 4.05845 4.30938 4.31758 4.34137 4.43039 4.52490 4.52940 4.68071 4.68711 4.75418 4.83702 4.90201 4.94799 5.02907 5.15762 5.17141 5.25656 5.34564 5.42529 5.51930 5.91314 6.01208 6.20382 6.31968 6.53487 7.07221 7.26619 7.74346 8.74960 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.001507 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.580858 B =18573.285464 C =18798.946847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.471 5.471 3 C 0.162 3.838 4 N -0.355 5.355 5 N -0.332 5.332 6 C 0.176 3.824 7 C 0.150 3.850 8 N -0.673 5.673 9 C 0.061 3.939 10 H 0.080 0.920 11 C -0.122 4.122 12 C -0.116 4.116 13 H 0.099 0.901 14 C 0.139 3.861 15 N -0.711 5.711 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.131 4.131 19 S -0.151 6.151 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.259 1.259 28 C -0.117 4.117 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.260 0.740 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.349 0.651 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 33.453 6.798 34.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.162 5.162 3 C -0.126 4.126 4 N -0.194 5.194 5 N -0.172 5.172 6 C -0.093 4.093 7 C 0.019 3.981 8 N -0.306 5.306 9 C -0.048 4.048 10 H 0.098 0.902 11 C -0.161 4.161 12 C -0.135 4.135 13 H 0.118 0.882 14 C 0.015 3.985 15 N -0.365 5.365 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.183 1.183 28 C -0.156 4.156 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.276 0.724 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.002 33.307 5.669 33.845 hybrid contribution -0.203 -0.870 0.504 1.026 sum -2.205 32.437 6.173 33.092 Atomic orbital electron populations 1.22551 0.72376 1.07161 1.05966 1.46483 1.10767 1.05670 1.53241 1.27239 0.86298 0.96639 1.02446 1.74183 1.20965 1.03503 1.20709 1.74181 1.19581 1.03772 1.19702 1.24957 0.87103 0.93120 1.04154 1.20272 1.01543 0.84487 0.91778 1.60478 1.55214 1.03342 1.11585 1.23130 0.96595 0.86846 0.98269 0.90239 1.23110 0.96759 0.96592 0.99593 1.22304 0.97792 0.93553 0.99847 0.88229 1.21208 0.94988 0.82194 1.00092 1.45751 1.29093 1.08772 1.52873 1.20030 0.84588 0.85097 0.78391 1.90683 1.26364 1.85574 1.41995 1.23383 1.03365 0.95731 1.05722 1.85537 1.36642 1.03561 1.66666 1.23218 1.12057 0.96633 1.37639 0.89947 1.26112 0.97549 1.01466 0.93935 1.70179 1.27220 1.25044 1.32298 0.84958 0.78267 0.76695 0.78090 1.19263 1.20301 1.18283 1.23137 0.99681 0.95141 0.97593 0.88135 0.86292 0.88233 0.72424 0.88844 0.90557 0.83166 0.89103 0.92409 0.91947 0.92359 0.74719 0.87358 0.87201 0.91993 0.90122 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.09 11.04 127.77 1.41 1.32 16 2 N -0.47 -4.29 3.15 -542.08 -1.71 -6.00 16 3 C 0.16 1.93 12.74 180.11 2.30 4.22 16 4 N -0.35 -8.25 12.21 -59.99 -0.73 -8.98 16 5 N -0.33 -8.41 12.21 -50.15 -0.61 -9.02 16 6 C 0.18 2.86 7.54 137.98 1.04 3.90 16 7 C 0.15 1.77 5.88 85.56 0.50 2.28 16 8 N -0.67 -7.39 6.55 -492.84 -3.23 -10.62 16 9 C 0.06 0.66 3.79 45.44 0.17 0.83 16 10 H 0.08 0.89 7.44 -2.38 -0.02 0.87 16 11 C -0.12 -1.65 7.41 31.12 0.23 -1.42 16 12 C -0.12 -1.42 3.94 -10.27 -0.04 -1.46 16 13 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 14 C 0.14 2.72 5.35 86.38 0.46 3.18 16 15 N -0.71 -16.97 5.56 -463.07 -2.57 -19.54 16 16 C 0.53 19.24 7.85 87.66 0.69 19.93 16 17 O -0.57 -25.84 15.86 -3.03 -0.05 -25.89 16 18 C -0.13 -5.13 6.16 71.24 0.44 -4.70 16 19 S -0.15 -8.38 20.57 -56.49 -1.16 -9.55 16 20 C -0.55 -31.31 9.50 67.95 0.65 -30.67 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.81 5.49 84.86 0.47 1.27 16 23 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 24 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 28 C -0.12 -1.02 7.24 31.12 0.23 -0.79 16 29 H 0.10 -0.41 8.14 -2.38 -0.02 -0.43 16 30 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.10 -0.28 7.19 -2.39 -0.02 -0.30 16 32 H 0.26 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 0.49 7.20 -2.39 -0.02 0.47 16 35 H 0.35 2.69 8.54 -89.70 -0.77 1.93 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.27 7.39 -2.38 -0.02 1.26 16 40 H 0.42 7.26 8.47 -92.70 -0.79 6.48 16 41 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.85 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -89.64 394.04 0.26 -89.38 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -0.53 Total: 12.32 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 8.54 Total: -2.10 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -8.56 Total: -109.79 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.55 kcal Total: -89.64 0.26 -89.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688921718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.015 kcal (2) G-P(sol) polarization free energy of solvation -89.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds