Wall clock time and date at job start Tue Mar 31 2020 23:15:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86808 * 119.99658 * 2 1
4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1
5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1
6 6 H 1.48501 * 109.47302 * 60.00286 * 3 2 1
7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00269 * 160.27844 * 7 2 1
9 9 N 1.36934 * 119.99964 * 340.27091 * 7 2 1
10 10 C 1.46494 * 120.00171 * 320.54068 * 9 7 2
11 11 C 1.53001 * 109.47158 * 269.99638 * 10 9 7
12 12 C 1.53005 * 109.47335 * 179.97438 * 11 10 9
13 13 N 1.46499 * 109.47203 * 180.02562 * 12 11 10
14 14 C 1.34771 * 119.99639 * 180.02562 * 13 12 11
15 15 O 1.21555 * 120.00483 * 0.02562 * 14 13 12
16 16 C 1.47850 * 119.99792 * 180.02562 * 14 13 12
17 17 C 1.40021 * 120.55925 * 180.02562 * 16 14 13
18 18 C 1.38352 * 118.28971 * 179.97438 * 17 16 14
19 19 C 1.38353 * 119.30068 * 359.97438 * 18 17 16
20 20 C 1.50704 * 119.45954 * 179.97438 * 19 18 17
21 21 F 1.39893 * 109.47314 * 210.00058 * 20 19 18
22 22 F 1.39898 * 109.47090 * 330.00626 * 20 19 18
23 23 N 1.31926 * 121.08117 * 359.97438 * 19 18 17
24 24 C 1.31698 * 121.88106 * 359.77069 * 23 19 18
25 25 C 1.46502 * 119.99656 * 140.53918 * 9 7 2
26 26 C 1.52997 * 117.50203 * 3.29086 * 25 9 7
27 27 C 1.52997 * 117.50023 * 294.66601 * 25 9 7
28 28 H 0.97000 * 120.00354 * 355.01078 * 1 2 3
29 29 H 1.09002 * 109.47288 * 29.99818 * 10 9 7
30 30 H 1.09006 * 109.47540 * 149.99906 * 10 9 7
31 31 H 1.08995 * 109.47516 * 300.00133 * 11 10 9
32 32 H 1.08999 * 109.47295 * 60.00330 * 11 10 9
33 33 H 1.08995 * 109.47029 * 300.00556 * 12 11 10
34 34 H 1.08999 * 109.46557 * 60.00003 * 12 11 10
35 35 H 0.96997 * 120.00071 * 0.02562 * 13 12 11
36 36 H 1.08002 * 120.85347 * 359.97438 * 17 16 14
37 37 H 1.07997 * 120.34909 * 179.97438 * 18 17 16
38 38 H 1.09007 * 109.46474 * 90.00172 * 20 19 18
39 39 H 1.07993 * 119.71912 * 180.24637 * 24 23 19
40 40 H 1.09008 * 115.54694 * 149.00279 * 25 9 7
41 41 H 1.08996 * 117.49829 * 359.97438 * 26 25 9
42 42 H 1.08995 * 117.50052 * 145.02543 * 26 25 9
43 43 H 1.09002 * 117.50243 * 214.98368 * 27 25 9
44 44 H 1.09002 * 117.49904 * 359.97438 * 27 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6179 0.0000
4 1 3.7100 1.3466 -0.0006
5 1 1.8912 2.3966 -1.2126
6 1 1.8913 2.3965 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0427 -1.2293 -0.3162
9 7 1.3859 -2.3533 0.3993
10 6 0.4642 -2.3294 1.5377
11 6 1.2396 -2.6054 2.8275
12 6 0.2771 -2.5798 4.0166
13 7 1.0196 -2.8434 5.2517
14 6 0.3731 -2.8702 6.4339
15 8 -0.8262 -2.6761 6.4754
16 6 1.1225 -3.1357 7.6804
17 6 0.4626 -3.1668 8.9150
18 6 1.2096 -3.4199 10.0516
19 6 2.5715 -3.6328 9.9332
20 6 3.3888 -3.9083 11.1691
21 9 4.6906 -3.4310 10.9833
22 9 2.8075 -3.2632 12.2659
23 7 3.1665 -3.5986 8.7562
24 6 2.4980 -3.3665 7.6455
25 6 1.6397 -3.6090 -0.3115
26 6 2.6700 -3.5849 -1.4423
27 6 1.1796 -3.7019 -1.7677
28 1 -0.4850 0.8368 0.0731
29 1 -0.0096 -1.3498 1.6011
30 1 -0.3002 -3.0947 1.4026
31 1 1.7134 -3.5849 2.7642
32 1 2.0039 -1.8402 2.9628
33 1 -0.1964 -1.6001 4.0798
34 1 -0.4875 -3.3448 3.8816
35 1 1.9765 -2.9987 5.2185
36 1 -0.6022 -2.9974 8.9782
37 1 0.7346 -3.4511 11.0210
38 1 3.4184 -4.9824 11.3530
39 1 3.0198 -3.3503 6.7001
40 1 1.5779 -4.5130 0.2944
41 1 3.1588 -2.6348 -1.6577
42 1 3.2865 -4.4731 -1.5805
43 1 0.8156 -4.6670 -2.1200
44 1 0.6877 -2.8289 -2.1968
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001689991857.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:15:02
Heat of formation + Delta-G solvation = -54.872830 kcal
Electronic energy + Delta-G solvation = -28009.173119 eV
Core-core repulsion = 23598.796353 eV
Total energy + Delta-G solvation = -4410.376766 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-49.45726 -47.45745 -41.03630 -39.25261 -37.16332 -35.48564 -33.72734 -33.20976
-32.75818 -31.54607 -29.56186 -27.64710 -25.40975 -24.34911 -23.86628 -22.85457
-21.46682 -21.12038 -20.73705 -19.69665 -18.56462 -18.02963 -17.96736 -17.58725
-16.75918 -16.32761 -15.72579 -15.56198 -15.44738 -15.20734 -14.75093 -14.55021
-14.40766 -14.25270 -13.98610 -13.79838 -13.56622 -13.53507 -13.38766 -13.03241
-12.69095 -12.27242 -11.96826 -11.81048 -11.61179 -11.08080 -10.88491 -10.79634
-10.72311 -10.52260 -10.46393 -10.21629 -10.12359 -9.87544 -9.78476 -9.67709
-9.60904 -9.28844 -9.04329 -8.52696 -6.58265 -5.83518 -3.50941 -0.01918
0.65612 2.47203 2.83235 3.00565 3.29638 3.33142 3.39611 3.41069
3.57564 3.75358 4.20407 4.26754 4.35587 4.38970 4.49314 4.59980
4.72386 4.91372 4.99752 5.11513 5.28047 5.38428 5.52072 5.54442
5.68597 5.87680 5.88884 5.92142 6.08592 6.21316 6.23814 6.30352
6.47866 6.57908 6.60222 6.66673 7.00304 7.04440 7.16262 7.22178
7.38527 7.56205 7.75114 8.02974 8.44710 9.10223 9.70976 10.29602
11.11132
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.014705 B = 0.002053 C = 0.002021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1903.647823 B =13636.522656 C =13852.627253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.882 5.882
2 C 0.015 3.985
3 Si 0.894 3.106
4 H -0.275 1.275
5 H -0.289 1.289
6 H -0.287 1.287
7 C -0.261 4.261
8 H 0.064 0.936
9 N -0.551 5.551
10 C 0.155 3.845
11 C -0.147 4.147
12 C 0.120 3.880
13 N -0.715 5.715
14 C 0.556 3.444
15 O -0.532 6.532
16 C -0.163 4.163
17 C -0.016 4.016
18 C -0.146 4.146
19 C 0.064 3.936
20 C 0.327 3.673
21 F -0.184 7.184
22 F -0.193 7.193
23 N -0.456 5.456
24 C 0.138 3.862
25 C 0.120 3.880
26 C -0.196 4.196
27 C -0.222 4.222
28 H 0.255 0.745
29 H 0.096 0.904
30 H 0.029 0.971
31 H 0.052 0.948
32 H 0.068 0.932
33 H 0.071 0.929
34 H 0.067 0.933
35 H 0.399 0.601
36 H 0.157 0.843
37 H 0.152 0.848
38 H 0.133 0.867
39 H 0.169 0.831
40 H 0.085 0.915
41 H 0.097 0.903
42 H 0.073 0.927
43 H 0.068 0.932
44 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.730 -10.220 20.204 22.947
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.186 4.186
3 Si 0.723 3.277
4 H -0.200 1.200
5 H -0.216 1.216
6 H -0.213 1.213
7 C -0.390 4.390
8 H 0.081 0.919
9 N -0.268 5.268
10 C 0.028 3.972
11 C -0.188 4.188
12 C -0.003 4.003
13 N -0.366 5.366
14 C 0.340 3.660
15 O -0.410 6.410
16 C -0.168 4.168
17 C -0.042 4.042
18 C -0.166 4.166
19 C -0.075 4.075
20 C 0.273 3.727
21 F -0.165 7.165
22 F -0.175 7.175
23 N -0.165 5.165
24 C -0.021 4.021
25 C 0.011 3.989
26 C -0.234 4.234
27 C -0.263 4.263
28 H 0.065 0.935
29 H 0.113 0.887
30 H 0.048 0.952
31 H 0.070 0.930
32 H 0.086 0.914
33 H 0.090 0.910
34 H 0.085 0.915
35 H 0.234 0.766
36 H 0.175 0.825
37 H 0.170 0.830
38 H 0.150 0.850
39 H 0.186 0.814
40 H 0.103 0.897
41 H 0.115 0.885
42 H 0.091 0.909
43 H 0.087 0.913
44 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 3.652 -10.021 20.120 22.772
hybrid contribution 0.058 1.086 -0.071 1.090
sum 3.710 -8.935 20.049 22.261
Atomic orbital electron populations
1.70059 1.05516 1.26171 1.50551 1.25253 0.95006 0.98832 0.99492
0.86383 0.79835 0.84056 0.77441 1.19979 1.21556 1.21333 1.19049
0.93304 0.84983 1.41679 0.91850 1.43346 1.50935 1.03151 1.29361
1.20749 0.90521 1.02755 0.83192 1.22493 0.99272 1.01453 0.95568
1.21564 0.95206 1.01727 0.81803 1.46117 1.12272 1.71327 1.06864
1.17961 0.87054 0.77807 0.83138 1.90805 1.14136 1.49240 1.86773
1.21297 0.95619 1.04362 0.95569 1.21788 1.01635 0.90719 0.90106
1.21869 0.93754 1.00294 1.00698 1.21876 0.92555 0.98944 0.94081
1.20097 0.75728 0.96220 0.80680 1.93053 1.37671 1.90505 1.95301
1.93028 1.84405 1.84725 1.55293 1.67304 1.39609 1.11881 0.97677
1.23046 0.90157 0.92207 0.96696 1.21233 1.00621 0.90591 0.86417
1.23015 0.92195 1.01776 1.06423 1.23347 0.96819 1.00948 1.05140
0.93513 0.88655 0.95222 0.92955 0.91378 0.91037 0.91476 0.76581
0.82542 0.83007 0.85020 0.81355 0.89699 0.88503 0.90860 0.91318
0.88990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -24.28 11.50 55.49 0.64 -23.65 16
2 C 0.02 0.40 4.98 -17.44 -0.09 0.31 16
3 Si 0.89 20.75 29.60 -169.99 -5.03 15.72 16
4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.26 -6.67 8.47 -15.06 -0.13 -6.79 16
8 H 0.06 1.64 6.75 -52.49 -0.35 1.29 16
9 N -0.55 -12.81 2.75 -165.66 -0.46 -13.26 16
10 C 0.15 3.28 5.33 -4.04 -0.02 3.26 16
11 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16
12 C 0.12 1.80 5.67 -4.04 -0.02 1.78 16
13 N -0.72 -8.82 5.51 -61.25 -0.34 -9.16 16
14 C 0.56 7.32 7.78 -12.33 -0.10 7.22 16
15 O -0.53 -8.88 16.42 5.32 0.09 -8.79 16
16 C -0.16 -1.71 5.89 -104.82 -0.62 -2.33 16
17 C -0.02 -0.15 9.72 -38.87 -0.38 -0.52 16
18 C -0.15 -1.10 9.42 -39.50 -0.37 -1.47 16
19 C 0.06 0.55 6.58 -82.51 -0.54 0.01 16
20 C 0.33 2.27 5.72 36.01 0.21 2.47 16
21 F -0.18 -1.79 17.05 2.25 0.04 -1.75 16
22 F -0.19 -1.46 16.45 2.25 0.04 -1.42 16
23 N -0.46 -4.67 9.94 -9.14 -0.09 -4.76 16
24 C 0.14 1.31 10.71 -17.13 -0.18 1.12 16
25 C 0.12 2.47 6.56 -67.93 -0.45 2.02 16
26 C -0.20 -3.76 9.80 -26.73 -0.26 -4.03 16
27 C -0.22 -4.45 10.36 -26.73 -0.28 -4.73 16
28 H 0.25 6.81 8.32 -40.82 -0.34 6.47 16
29 H 0.10 2.33 5.59 -51.93 -0.29 2.04 16
30 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
35 H 0.40 3.86 6.54 -40.82 -0.27 3.59 16
36 H 0.16 1.31 7.74 -52.49 -0.41 0.91 16
37 H 0.15 0.75 7.59 -52.49 -0.40 0.36 16
38 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16
39 H 0.17 1.20 6.42 -52.49 -0.34 0.87 16
40 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16
41 H 0.10 2.04 6.46 -51.93 -0.34 1.70 16
42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16
LS Contribution 379.93 15.07 5.73 5.73
Total: -1.00 -31.35 379.93 -8.51 -39.87
By element:
Atomic # 1 Polarization: 11.51 SS G_CDS: -5.75 Total: 5.76 kcal
Atomic # 6 Polarization: -0.91 SS G_CDS: -3.38 Total: -4.29 kcal
Atomic # 7 Polarization: -50.58 SS G_CDS: -0.25 Total: -50.82 kcal
Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal
Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -31.35 -8.51 -39.87 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001689991857.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.004 kcal
(2) G-P(sol) polarization free energy of solvation -31.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.358 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds