Wall clock time and date at job start Tue Mar 31 2020 23:15:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86808 * 119.99658 * 2 1
4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1
5 5 H 1.48507 * 109.47040 * 300.00056 * 3 2 1
6 6 H 1.48501 * 109.47302 * 60.00286 * 3 2 1
7 7 C 1.38806 * 120.00311 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00269 * 160.27844 * 7 2 1
9 9 N 1.36934 * 119.99964 * 340.27091 * 7 2 1
10 10 C 1.46494 * 120.00171 * 320.54068 * 9 7 2
11 11 C 1.53001 * 109.47158 * 269.99638 * 10 9 7
12 12 C 1.53005 * 109.47335 * 179.97438 * 11 10 9
13 13 N 1.46499 * 109.47203 * 180.02562 * 12 11 10
14 14 C 1.34771 * 119.99639 * 180.02562 * 13 12 11
15 15 O 1.21555 * 120.00483 * 0.02562 * 14 13 12
16 16 C 1.47850 * 119.99792 * 180.02562 * 14 13 12
17 17 C 1.40021 * 120.55925 * 180.02562 * 16 14 13
18 18 C 1.38352 * 118.28971 * 179.97438 * 17 16 14
19 19 C 1.38353 * 119.30068 * 359.97438 * 18 17 16
20 20 C 1.50704 * 119.45954 * 179.97438 * 19 18 17
21 21 F 1.39893 * 109.47314 * 210.00058 * 20 19 18
22 22 F 1.39898 * 109.47090 * 330.00626 * 20 19 18
23 23 N 1.31926 * 121.08117 * 359.97438 * 19 18 17
24 24 C 1.31698 * 121.88106 * 359.77069 * 23 19 18
25 25 C 1.46502 * 119.99656 * 140.53918 * 9 7 2
26 26 C 1.52997 * 117.50203 * 3.29086 * 25 9 7
27 27 C 1.52997 * 117.50023 * 294.66601 * 25 9 7
28 28 H 0.97000 * 120.00354 * 355.01078 * 1 2 3
29 29 H 1.09002 * 109.47288 * 29.99818 * 10 9 7
30 30 H 1.09006 * 109.47540 * 149.99906 * 10 9 7
31 31 H 1.08995 * 109.47516 * 300.00133 * 11 10 9
32 32 H 1.08999 * 109.47295 * 60.00330 * 11 10 9
33 33 H 1.08995 * 109.47029 * 300.00556 * 12 11 10
34 34 H 1.08999 * 109.46557 * 60.00003 * 12 11 10
35 35 H 0.96997 * 120.00071 * 0.02562 * 13 12 11
36 36 H 1.08002 * 120.85347 * 359.97438 * 17 16 14
37 37 H 1.07997 * 120.34909 * 179.97438 * 18 17 16
38 38 H 1.09007 * 109.46474 * 90.00172 * 20 19 18
39 39 H 1.07993 * 119.71912 * 180.24637 * 24 23 19
40 40 H 1.09008 * 115.54694 * 149.00279 * 25 9 7
41 41 H 1.08996 * 117.49829 * 359.97438 * 26 25 9
42 42 H 1.08995 * 117.50052 * 145.02543 * 26 25 9
43 43 H 1.09002 * 117.50243 * 214.98368 * 27 25 9
44 44 H 1.09002 * 117.49904 * 359.97438 * 27 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6179 0.0000
4 1 3.7100 1.3466 -0.0006
5 1 1.8912 2.3966 -1.2126
6 1 1.8913 2.3965 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0427 -1.2293 -0.3162
9 7 1.3859 -2.3533 0.3993
10 6 0.4642 -2.3294 1.5377
11 6 1.2396 -2.6054 2.8275
12 6 0.2771 -2.5798 4.0166
13 7 1.0196 -2.8434 5.2517
14 6 0.3731 -2.8702 6.4339
15 8 -0.8262 -2.6761 6.4754
16 6 1.1225 -3.1357 7.6804
17 6 0.4626 -3.1668 8.9150
18 6 1.2096 -3.4199 10.0516
19 6 2.5715 -3.6328 9.9332
20 6 3.3888 -3.9083 11.1691
21 9 4.6906 -3.4310 10.9833
22 9 2.8075 -3.2632 12.2659
23 7 3.1665 -3.5986 8.7562
24 6 2.4980 -3.3665 7.6455
25 6 1.6397 -3.6090 -0.3115
26 6 2.6700 -3.5849 -1.4423
27 6 1.1796 -3.7019 -1.7677
28 1 -0.4850 0.8368 0.0731
29 1 -0.0096 -1.3498 1.6011
30 1 -0.3002 -3.0947 1.4026
31 1 1.7134 -3.5849 2.7642
32 1 2.0039 -1.8402 2.9628
33 1 -0.1964 -1.6001 4.0798
34 1 -0.4875 -3.3448 3.8816
35 1 1.9765 -2.9987 5.2185
36 1 -0.6022 -2.9974 8.9782
37 1 0.7346 -3.4511 11.0210
38 1 3.4184 -4.9824 11.3530
39 1 3.0198 -3.3503 6.7001
40 1 1.5779 -4.5130 0.2944
41 1 3.1588 -2.6348 -1.6577
42 1 3.2865 -4.4731 -1.5805
43 1 0.8156 -4.6670 -2.1200
44 1 0.6877 -2.8289 -2.1968
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001689991857.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:15:01
Heat of formation + Delta-G solvation = -73.537035 kcal
Electronic energy + Delta-G solvation = -28009.982459 eV
Core-core repulsion = 23598.796353 eV
Total energy + Delta-G solvation = -4411.186106 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-50.03326 -48.05536 -41.83214 -40.24733 -38.82777 -36.76812 -35.30748 -34.06762
-33.65036 -33.00954 -31.10594 -28.48552 -27.00153 -25.32875 -25.01456 -23.79337
-23.01726 -22.50954 -21.82944 -21.39073 -19.33363 -18.69664 -18.56085 -18.36669
-18.21534 -17.45892 -17.23216 -16.72358 -16.54233 -16.38021 -16.07347 -15.80286
-15.43334 -15.26652 -14.88513 -14.76046 -14.52230 -14.39094 -14.23893 -14.15227
-13.90338 -13.67363 -13.63357 -13.23552 -12.80036 -12.60744 -12.44972 -12.38556
-12.27741 -12.00017 -11.87424 -11.49995 -11.36898 -11.26318 -11.18305 -10.87482
-10.72284 -10.52002 -10.48360 -10.15510 -8.48524 -7.77577 -5.49974 -0.75399
-0.01319 1.42451 1.47502 1.55763 1.57465 1.95382 2.26764 2.48948
2.55162 3.07461 3.16977 3.17879 3.42573 3.47518 3.53370 3.61938
3.69599 3.83477 3.98925 4.11853 4.18997 4.25225 4.34786 4.43765
4.48242 4.56694 4.61737 4.72363 4.77606 4.85956 4.93081 4.97133
5.09372 5.12775 5.22525 5.34015 5.38810 5.49128 5.57880 5.69749
5.84483 6.37227 6.48317 6.49089 7.02087 7.17757 7.86171 8.37832
9.11218
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.014705 B = 0.002053 C = 0.002021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1903.647823 B =13636.522656 C =13852.627253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C -0.033 4.033
3 Si 0.949 3.051
4 H -0.265 1.265
5 H -0.296 1.296
6 H -0.289 1.289
7 C -0.255 4.255
8 H 0.059 0.941
9 N -0.569 5.569
10 C 0.153 3.847
11 C -0.124 4.124
12 C 0.133 3.867
13 N -0.705 5.705
14 C 0.558 3.442
15 O -0.573 6.573
16 C -0.177 4.177
17 C -0.019 4.019
18 C -0.137 4.137
19 C 0.060 3.940
20 C 0.326 3.674
21 F -0.202 7.202
22 F -0.196 7.196
23 N -0.477 5.477
24 C 0.141 3.859
25 C 0.104 3.896
26 C -0.181 4.181
27 C -0.224 4.224
28 H 0.250 0.750
29 H 0.060 0.940
30 H 0.032 0.968
31 H 0.074 0.926
32 H 0.056 0.944
33 H 0.049 0.951
34 H 0.067 0.933
35 H 0.414 0.586
36 H 0.160 0.840
37 H 0.180 0.820
38 H 0.176 0.824
39 H 0.187 0.813
40 H 0.116 0.884
41 H 0.073 0.927
42 H 0.111 0.889
43 H 0.100 0.900
44 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.321 -12.128 21.786 25.496
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.557 5.557
2 C -0.231 4.231
3 Si 0.777 3.223
4 H -0.189 1.189
5 H -0.224 1.224
6 H -0.216 1.216
7 C -0.386 4.386
8 H 0.077 0.923
9 N -0.286 5.286
10 C 0.027 3.973
11 C -0.164 4.164
12 C 0.009 3.991
13 N -0.357 5.357
14 C 0.345 3.655
15 O -0.454 6.454
16 C -0.182 4.182
17 C -0.046 4.046
18 C -0.156 4.156
19 C -0.078 4.078
20 C 0.272 3.728
21 F -0.183 7.183
22 F -0.178 7.178
23 N -0.185 5.185
24 C -0.018 4.018
25 C -0.004 4.004
26 C -0.219 4.219
27 C -0.264 4.264
28 H 0.059 0.941
29 H 0.078 0.922
30 H 0.050 0.950
31 H 0.092 0.908
32 H 0.075 0.925
33 H 0.067 0.933
34 H 0.086 0.914
35 H 0.252 0.748
36 H 0.178 0.822
37 H 0.198 0.802
38 H 0.193 0.807
39 H 0.204 0.796
40 H 0.133 0.867
41 H 0.091 0.909
42 H 0.129 0.871
43 H 0.118 0.882
44 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 5.294 -11.950 21.711 25.342
hybrid contribution -0.439 1.609 -0.548 1.755
sum 4.855 -10.341 21.163 24.050
Atomic orbital electron populations
1.70182 1.06717 1.26274 1.52576 1.25861 0.95560 1.01399 1.00290
0.85517 0.79232 0.80846 0.76706 1.18946 1.22351 1.21572 1.19191
0.93129 0.86055 1.40216 0.92343 1.43566 1.50980 1.03565 1.30489
1.20664 0.90885 1.00930 0.84814 1.22124 0.98421 1.02088 0.93811
1.21213 0.94893 1.00612 0.82419 1.45899 1.12914 1.70957 1.05924
1.18319 0.86649 0.76652 0.83877 1.90783 1.15980 1.51212 1.87382
1.21076 0.96004 1.06529 0.94625 1.21955 1.02034 0.90361 0.90201
1.22105 0.93283 0.98930 1.01300 1.22301 0.93291 0.97928 0.94329
1.20537 0.74412 0.98135 0.79759 1.93016 1.39003 1.90922 1.95384
1.93022 1.84370 1.85075 1.55303 1.67363 1.40078 1.12801 0.98303
1.23275 0.89681 0.91421 0.97425 1.21571 1.01542 0.90424 0.86837
1.23017 0.91824 1.02256 1.04800 1.23264 0.97582 1.00802 1.04796
0.94116 0.92211 0.94980 0.90753 0.92521 0.93292 0.91427 0.74822
0.82249 0.80230 0.80736 0.79613 0.86651 0.90861 0.87050 0.88198
0.93054
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -52.15 11.50 21.65 0.25 -51.90 16
2 C -0.03 -1.79 4.98 84.86 0.42 -1.36 16
3 Si 0.95 43.51 29.60 68.60 2.03 45.55 16
4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16
6 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16
7 C -0.26 -13.19 8.47 84.03 0.71 -12.48 16
8 H 0.06 3.04 6.75 -2.91 -0.02 3.02 16
9 N -0.57 -26.35 2.75 -678.04 -1.86 -28.21 16
10 C 0.15 6.57 5.33 86.38 0.46 7.03 16
11 C -0.12 -4.07 5.65 30.60 0.17 -3.89 16
12 C 0.13 3.97 5.67 86.38 0.49 4.46 16
13 N -0.71 -16.81 5.51 -465.97 -2.57 -19.37 16
14 C 0.56 14.48 7.78 86.79 0.68 15.16 16
15 O -0.57 -19.35 16.42 -3.89 -0.06 -19.41 16
16 C -0.18 -3.52 5.89 -19.99 -0.12 -3.63 16
17 C -0.02 -0.32 9.72 22.73 0.22 -0.10 16
18 C -0.14 -1.74 9.42 22.32 0.21 -1.53 16
19 C 0.06 0.90 6.58 42.57 0.28 1.18 16
20 C 0.33 3.64 5.72 71.24 0.41 4.04 16
21 F -0.20 -3.56 17.05 44.97 0.77 -2.79 16
22 F -0.20 -2.46 16.45 44.97 0.74 -1.72 16
23 N -0.48 -8.84 9.94 -182.82 -1.82 -10.66 16
24 C 0.14 2.43 10.71 85.02 0.91 3.34 16
25 C 0.10 4.10 6.56 44.99 0.30 4.39 16
26 C -0.18 -6.58 9.80 30.59 0.30 -6.28 16
27 C -0.22 -8.71 10.36 30.59 0.32 -8.40 16
28 H 0.25 13.88 8.32 -92.71 -0.77 13.11 16
29 H 0.06 3.04 5.59 -2.39 -0.01 3.02 16
30 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16
31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
35 H 0.41 7.31 6.54 -92.71 -0.61 6.71 16
36 H 0.16 2.54 7.74 -2.91 -0.02 2.52 16
37 H 0.18 1.21 7.59 -2.91 -0.02 1.19 16
38 H 0.18 0.47 8.14 -2.38 -0.02 0.45 16
39 H 0.19 2.29 6.42 -2.91 -0.02 2.27 16
40 H 0.12 3.82 8.14 -2.38 -0.02 3.80 16
41 H 0.07 3.02 6.46 -2.39 -0.02 3.01 16
42 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16
43 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16
44 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16
Total: -1.00 -69.85 379.93 3.67 -66.18
By element:
Atomic # 1 Polarization: 19.97 SS G_CDS: 0.44 Total: 20.41 kcal
Atomic # 6 Polarization: -3.82 SS G_CDS: 5.76 Total: 1.94 kcal
Atomic # 7 Polarization: -104.14 SS G_CDS: -6.00 Total: -110.14 kcal
Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.41 kcal
Atomic # 9 Polarization: -6.02 SS G_CDS: 1.51 Total: -4.51 kcal
Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.55 kcal
Total: -69.85 3.67 -66.18 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001689991857.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.361 kcal
(2) G-P(sol) polarization free energy of solvation -69.846 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.537 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds