Wall clock time and date at job start Tue Mar 31 2020 22:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28591 * 124.61775 * 2 1 4 4 C 1.31381 * 108.71736 * 179.71644 * 3 2 1 5 5 C 1.39675 * 105.89944 * 0.42483 * 4 3 2 6 6 C 1.50706 * 127.05379 * 179.83611 * 5 4 3 7 7 N 1.46899 * 109.46862 * 94.71316 * 6 5 4 8 8 C 1.46847 * 111.00030 * 66.05002 * 7 6 5 9 9 C 1.53034 * 109.52326 * 174.16117 * 8 7 6 10 10 C 1.53117 * 109.28010 * 59.17583 * 9 8 7 11 11 C 1.53119 * 109.16519 * 302.34814 * 10 9 8 12 12 H 1.09004 * 109.50124 * 297.67309 * 11 10 9 13 13 N 1.46498 * 109.50817 * 177.59204 * 11 10 9 14 14 C 1.34777 * 119.99828 * 84.72111 * 13 11 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00163 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46850 * 90.00589 * 22 20 18 24 24 H 1.48498 * 109.47329 * 210.00016 * 22 20 18 25 25 H 1.48499 * 109.47220 * 330.01003 * 22 20 18 26 26 C 1.46855 * 111.00079 * 301.83912 * 7 6 5 27 27 N 1.28601 * 124.61752 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46957 * 270.00025 * 1 2 3 29 29 H 1.08994 * 109.46843 * 30.00709 * 1 2 3 30 30 H 1.08998 * 109.46917 * 150.00318 * 1 2 3 31 31 H 1.08003 * 127.05255 * 180.26361 * 4 3 2 32 32 H 1.09002 * 109.46854 * 334.71505 * 6 5 4 33 33 H 1.08998 * 109.47401 * 214.71638 * 6 5 4 34 34 H 1.08991 * 109.45838 * 54.14472 * 8 7 6 35 35 H 1.09002 * 109.45812 * 294.17252 * 8 7 6 36 36 H 1.08999 * 109.50313 * 299.23815 * 9 8 7 37 37 H 1.08993 * 109.53842 * 179.13986 * 9 8 7 38 38 H 1.08999 * 109.52842 * 182.43981 * 10 9 8 39 39 H 1.09004 * 109.57425 * 62.28323 * 10 9 8 40 40 H 0.97001 * 120.00384 * 265.00558 * 13 11 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 42 42 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 43 43 H 0.96991 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.46027 * 65.82420 * 26 7 6 45 45 H 1.09006 * 109.46257 * 305.85734 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 0.0062 5 6 3.4591 -0.6984 0.0001 6 6 4.6619 -1.6065 0.0001 7 7 4.9795 -1.9983 1.3798 8 6 3.9128 -2.8315 1.9491 9 6 4.3413 -3.3395 3.3276 10 6 4.6236 -2.1440 4.2417 11 6 5.7036 -1.2666 3.6026 12 1 6.6275 -1.8373 3.5087 13 7 5.9387 -0.0900 4.4432 14 6 6.7913 -0.1652 5.4843 15 8 7.3678 -1.2054 5.7222 16 6 7.0285 1.0434 6.3528 17 16 8.2155 0.6275 7.6544 18 6 8.3040 2.1743 8.4934 19 1 7.7163 3.0113 8.1464 20 6 9.1283 2.3169 9.6010 21 7 9.8443 1.2967 10.0243 22 14 9.2227 3.9570 10.4901 23 1 8.1941 3.9998 11.5604 24 1 10.5706 4.1167 11.0924 25 1 8.9783 5.0584 9.5244 26 6 5.2356 -0.8187 2.2162 27 7 2.1956 -1.0583 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.3211 1.3490 0.0118 32 1 5.5131 -1.0819 -0.4338 33 1 4.4448 -2.4970 -0.5897 34 1 3.7249 -3.6802 1.2916 35 1 3.0028 -2.2395 2.0470 36 1 5.2436 -3.9430 3.2288 37 1 3.5435 -3.9455 3.7570 38 1 4.9708 -2.5007 5.2114 39 1 3.7117 -1.5614 4.3731 40 1 5.4777 0.7419 4.2530 41 1 7.4266 1.8555 5.7445 42 1 6.0874 1.3560 6.8052 43 1 10.4206 1.3964 10.7980 44 1 4.3193 -0.2362 2.3128 45 1 6.0084 -0.2055 1.7525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690032258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:16 Heat of formation + Delta-G solvation = 77.219191 kcal Electronic energy + Delta-G solvation = -26787.480061 eV Core-core repulsion = 22968.964373 eV Total energy + Delta-G solvation = -3818.515688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.95814 -39.93148 -38.48461 -35.33042 -33.99458 -33.07309 -32.42698 -32.41070 -30.46663 -28.86422 -28.20276 -26.50865 -25.46646 -23.56354 -23.21632 -22.39265 -21.28039 -20.26896 -19.80409 -17.83957 -17.63682 -17.31529 -16.53229 -16.32312 -15.69186 -15.22295 -15.10045 -14.90722 -14.79262 -14.72582 -14.31413 -13.90156 -13.79483 -13.47111 -13.39562 -13.16544 -13.06664 -12.87796 -12.56475 -12.38436 -11.98487 -11.53900 -11.47433 -11.17892 -11.05499 -11.04851 -11.00849 -10.89954 -10.75214 -10.67600 -10.54710 -9.79624 -9.60897 -9.33564 -9.05393 -8.85324 -8.75660 -8.21308 -6.47773 -6.20050 -3.90271 1.41669 1.92778 1.99842 2.99919 3.13448 3.23342 3.27665 3.31643 3.55773 3.67896 3.94094 4.22032 4.31861 4.50701 4.51812 4.61516 4.73397 4.77313 4.82184 4.88510 4.95300 5.13751 5.15054 5.17996 5.21276 5.34711 5.37262 5.49436 5.54113 5.63876 5.67987 5.69581 5.77884 5.83192 5.92067 5.98087 6.16355 6.19200 6.25835 6.28893 6.57721 6.69431 6.81984 7.61153 7.75293 7.93718 8.36839 8.66255 9.25236 10.87357 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.002164 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.897916 B =12936.903891 C =13839.415678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.160 5.160 3 N -0.289 5.289 4 C -0.017 4.017 5 C -0.034 4.034 6 C 0.143 3.857 7 N -0.517 5.517 8 C 0.055 3.945 9 C -0.114 4.114 10 C -0.133 4.133 11 C 0.152 3.848 12 H 0.098 0.902 13 N -0.735 5.735 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.050 3.950 27 N -0.278 5.278 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.196 0.804 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.395 0.605 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.038 0.962 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.756 -4.408 -23.946 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.061 5.061 3 N -0.130 5.130 4 C -0.200 4.200 5 C -0.199 4.199 6 C 0.013 3.987 7 N -0.240 5.240 8 C -0.073 4.073 9 C -0.153 4.153 10 C -0.171 4.171 11 C 0.046 3.954 12 H 0.116 0.884 13 N -0.389 5.389 14 C 0.320 3.680 15 O -0.388 6.388 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.079 4.079 27 N -0.122 5.122 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.213 0.787 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.229 0.771 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.630 -6.500 -23.420 30.624 hybrid contribution -0.870 3.343 0.286 3.467 sum -19.500 -3.157 -23.135 30.421 Atomic orbital electron populations 1.22124 0.70320 1.05791 1.04999 1.47983 1.08895 0.99432 1.49795 1.74077 1.04036 1.16009 1.18913 1.24713 0.94484 0.94778 1.06034 1.24268 0.93664 0.95110 1.06813 1.20704 0.90373 0.96710 0.90949 1.62220 1.42007 1.18451 1.01294 1.22160 0.92043 0.96827 0.96222 1.21550 1.02198 0.97689 0.93826 1.21997 0.98459 0.96688 0.99995 1.20802 0.99643 0.86961 0.87988 0.88397 1.46009 1.47275 1.14141 1.31491 1.20275 0.77802 0.89902 0.79984 1.90703 1.47644 1.31008 1.69477 1.23536 1.06025 0.98537 1.02311 1.85394 1.51577 1.18168 1.28131 1.22869 1.31249 0.97628 1.16600 0.90972 1.24994 0.94655 0.97716 0.96255 1.70018 1.25606 1.30159 1.24489 0.86172 0.77637 0.82233 0.79477 1.20306 1.20747 1.19709 1.22308 1.00295 0.91971 0.93293 1.74049 1.03590 1.15721 1.18790 0.89274 0.87938 0.87959 0.78692 0.88009 0.88731 0.90447 0.94432 0.90561 0.91284 0.90700 0.92594 0.77131 0.89241 0.89368 0.92198 0.94377 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.45 11.57 59.85 0.69 1.14 16 2 N -0.16 -1.40 4.35 -16.64 -0.07 -1.48 16 3 N -0.29 -2.85 12.05 30.68 0.37 -2.48 16 4 C -0.02 -0.15 11.27 -17.21 -0.19 -0.34 16 5 C -0.03 -0.29 4.89 -82.25 -0.40 -0.69 16 6 C 0.14 1.02 5.96 -4.97 -0.03 0.99 16 7 N -0.52 -4.59 4.86 -236.11 -1.15 -5.73 16 8 C 0.06 0.50 5.10 -3.84 -0.02 0.48 16 9 C -0.11 -1.14 6.09 -26.65 -0.16 -1.30 16 10 C -0.13 -1.60 5.57 -26.61 -0.15 -1.75 16 11 C 0.15 1.87 2.61 -67.85 -0.18 1.70 16 12 H 0.10 1.45 7.59 -51.93 -0.39 1.06 16 13 N -0.74 -9.99 5.08 -53.73 -0.27 -10.27 16 14 C 0.53 10.00 7.81 -10.98 -0.09 9.91 16 15 O -0.51 -11.68 15.53 5.55 0.09 -11.59 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.05 0.47 4.33 -3.83 -0.02 0.46 16 27 N -0.28 -2.67 11.25 33.72 0.38 -2.29 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.20 1.15 8.06 -52.48 -0.42 0.73 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 35 H 0.04 0.39 6.89 -51.93 -0.36 0.03 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 4.30 8.60 -40.82 -0.35 3.95 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.38 6.74 -51.93 -0.35 0.03 16 45 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -36.79 383.81 -8.41 -45.20 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.91 Total: 1.07 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.12 Total: -5.33 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.01 Total: -47.79 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.79 -8.41 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690032258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.416 kcal (2) G-P(sol) polarization free energy of solvation -36.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds