Wall clock time and date at job start Tue Mar 31 2020 22:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28591 * 124.61775 * 2 1 4 4 C 1.31381 * 108.71736 * 179.71644 * 3 2 1 5 5 C 1.39675 * 105.89944 * 0.42483 * 4 3 2 6 6 C 1.50706 * 127.05379 * 179.83611 * 5 4 3 7 7 N 1.46899 * 109.46862 * 94.71316 * 6 5 4 8 8 C 1.46847 * 111.00030 * 66.05002 * 7 6 5 9 9 C 1.53034 * 109.52326 * 174.16117 * 8 7 6 10 10 C 1.53117 * 109.28010 * 59.17583 * 9 8 7 11 11 C 1.53119 * 109.16519 * 302.34814 * 10 9 8 12 12 H 1.09004 * 109.50124 * 297.67309 * 11 10 9 13 13 N 1.46498 * 109.50817 * 177.59204 * 11 10 9 14 14 C 1.34777 * 119.99828 * 84.72111 * 13 11 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00163 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46850 * 90.00589 * 22 20 18 24 24 H 1.48498 * 109.47329 * 210.00016 * 22 20 18 25 25 H 1.48499 * 109.47220 * 330.01003 * 22 20 18 26 26 C 1.46855 * 111.00079 * 301.83912 * 7 6 5 27 27 N 1.28601 * 124.61752 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46957 * 270.00025 * 1 2 3 29 29 H 1.08994 * 109.46843 * 30.00709 * 1 2 3 30 30 H 1.08998 * 109.46917 * 150.00318 * 1 2 3 31 31 H 1.08003 * 127.05255 * 180.26361 * 4 3 2 32 32 H 1.09002 * 109.46854 * 334.71505 * 6 5 4 33 33 H 1.08998 * 109.47401 * 214.71638 * 6 5 4 34 34 H 1.08991 * 109.45838 * 54.14472 * 8 7 6 35 35 H 1.09002 * 109.45812 * 294.17252 * 8 7 6 36 36 H 1.08999 * 109.50313 * 299.23815 * 9 8 7 37 37 H 1.08993 * 109.53842 * 179.13986 * 9 8 7 38 38 H 1.08999 * 109.52842 * 182.43981 * 10 9 8 39 39 H 1.09004 * 109.57425 * 62.28323 * 10 9 8 40 40 H 0.97001 * 120.00384 * 265.00558 * 13 11 10 41 41 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 42 42 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 43 43 H 0.96991 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.46027 * 65.82420 * 26 7 6 45 45 H 1.09006 * 109.46257 * 305.85734 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 0.0062 5 6 3.4591 -0.6984 0.0001 6 6 4.6619 -1.6065 0.0001 7 7 4.9795 -1.9983 1.3798 8 6 3.9128 -2.8315 1.9491 9 6 4.3413 -3.3395 3.3276 10 6 4.6236 -2.1440 4.2417 11 6 5.7036 -1.2666 3.6026 12 1 6.6275 -1.8373 3.5087 13 7 5.9387 -0.0900 4.4432 14 6 6.7913 -0.1652 5.4843 15 8 7.3678 -1.2054 5.7222 16 6 7.0285 1.0434 6.3528 17 16 8.2155 0.6275 7.6544 18 6 8.3040 2.1743 8.4934 19 1 7.7163 3.0113 8.1464 20 6 9.1283 2.3169 9.6010 21 7 9.8443 1.2967 10.0243 22 14 9.2227 3.9570 10.4901 23 1 8.1941 3.9998 11.5604 24 1 10.5706 4.1167 11.0924 25 1 8.9783 5.0584 9.5244 26 6 5.2356 -0.8187 2.2162 27 7 2.1956 -1.0583 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.3211 1.3490 0.0118 32 1 5.5131 -1.0819 -0.4338 33 1 4.4448 -2.4970 -0.5897 34 1 3.7249 -3.6802 1.2916 35 1 3.0028 -2.2395 2.0470 36 1 5.2436 -3.9430 3.2288 37 1 3.5435 -3.9455 3.7570 38 1 4.9708 -2.5007 5.2114 39 1 3.7117 -1.5614 4.3731 40 1 5.4777 0.7419 4.2530 41 1 7.4266 1.8555 5.7445 42 1 6.0874 1.3560 6.8052 43 1 10.4206 1.3964 10.7980 44 1 4.3193 -0.2362 2.3128 45 1 6.0084 -0.2055 1.7525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690032258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:15 Heat of formation + Delta-G solvation = 48.618592 kcal Electronic energy + Delta-G solvation = -26788.720276 eV Core-core repulsion = 22968.964373 eV Total energy + Delta-G solvation = -3819.755903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.55162 -41.07788 -39.62356 -36.30202 -34.83589 -34.57642 -33.81306 -33.12807 -31.74413 -29.68082 -29.24854 -27.64709 -27.10771 -24.34096 -24.06314 -23.11001 -21.99368 -21.58715 -20.74290 -19.77969 -18.19331 -18.02307 -17.80048 -17.48847 -16.87518 -16.59054 -16.38898 -15.97312 -15.93965 -15.68375 -15.43286 -15.02008 -14.78099 -14.65573 -14.46851 -14.00674 -13.85139 -13.66629 -13.59695 -13.46685 -13.15961 -13.08781 -12.88975 -12.60961 -12.40552 -12.18281 -11.92484 -11.86061 -11.76099 -11.71188 -11.57834 -11.25775 -11.13822 -10.90183 -10.26786 -10.19020 -10.07492 -9.47984 -8.65813 -8.34057 -6.11954 0.80865 1.26586 1.38953 1.42673 1.47383 1.50399 1.57670 1.62718 2.19462 2.28292 2.99915 3.02821 3.18322 3.33487 3.65320 3.81558 3.82007 3.98083 4.04081 4.08897 4.26122 4.26356 4.30711 4.32183 4.33218 4.50761 4.51398 4.54778 4.57827 4.60792 4.69419 4.85650 4.90436 4.92854 5.04618 5.11480 5.20274 5.24126 5.31627 5.42362 5.47167 5.75577 5.99652 6.02136 6.20405 6.50844 7.07145 7.25955 7.33606 8.75129 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.002164 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.897916 B =12936.903891 C =13839.415678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.164 5.164 3 N -0.313 5.313 4 C -0.023 4.023 5 C -0.039 4.039 6 C 0.145 3.855 7 N -0.522 5.522 8 C 0.063 3.937 9 C -0.110 4.110 10 C -0.129 4.129 11 C 0.152 3.848 12 H 0.073 0.927 13 N -0.710 5.710 14 C 0.537 3.463 15 O -0.561 6.561 16 C -0.129 4.129 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.258 1.258 26 C 0.063 3.937 27 N -0.295 5.295 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.217 0.783 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.413 0.587 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.040 0.960 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.227 -2.684 -25.584 32.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.066 5.066 3 N -0.155 5.155 4 C -0.205 4.205 5 C -0.203 4.203 6 C 0.016 3.984 7 N -0.245 5.245 8 C -0.065 4.065 9 C -0.148 4.148 10 C -0.168 4.168 11 C 0.047 3.953 12 H 0.092 0.908 13 N -0.363 5.363 14 C 0.323 3.677 15 O -0.439 6.439 16 C -0.281 4.281 17 S 0.077 5.923 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.182 1.182 26 C -0.066 4.066 27 N -0.139 5.139 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.234 0.766 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.250 0.750 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.154 -4.757 -25.110 32.547 hybrid contribution -0.521 2.746 0.685 2.878 sum -20.675 -2.011 -24.424 32.063 Atomic orbital electron populations 1.22476 0.68459 1.07243 1.06037 1.48409 1.10036 0.98953 1.49225 1.74053 1.04817 1.16809 1.19807 1.25135 0.94798 0.95158 1.05433 1.24455 0.93726 0.95376 1.06760 1.20825 0.90695 0.97177 0.89727 1.62218 1.42044 1.18166 1.02051 1.22074 0.91620 0.97123 0.95634 1.21523 1.02305 0.96766 0.94216 1.21931 0.98274 0.97580 0.98972 1.20879 0.98739 0.86183 0.89527 0.90850 1.45735 1.45402 1.15482 1.29698 1.20023 0.78271 0.88638 0.80743 1.90695 1.49862 1.32389 1.70939 1.23372 1.04522 0.99780 1.00377 1.85581 1.54981 1.19893 1.31816 1.23201 1.31526 0.97670 1.16979 0.89954 1.26137 0.93971 1.02027 0.97099 1.70184 1.26539 1.32825 1.25195 0.84951 0.77847 0.76976 0.78184 1.19375 1.20270 1.18169 1.22159 1.00679 0.92301 0.91439 1.74018 1.04239 1.16372 1.19281 0.88410 0.86592 0.86519 0.76617 0.85950 0.87989 0.89272 0.95263 0.91284 0.90197 0.93817 0.92073 0.75022 0.87078 0.87498 0.92002 0.94157 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.57 127.77 1.48 2.12 16 2 N -0.16 -2.61 4.35 -206.55 -0.90 -3.51 16 3 N -0.31 -5.63 12.05 -56.86 -0.69 -6.32 16 4 C -0.02 -0.34 11.27 85.11 0.96 0.62 16 5 C -0.04 -0.58 4.89 42.98 0.21 -0.37 16 6 C 0.15 1.70 5.96 85.56 0.51 2.21 16 7 N -0.52 -8.14 4.86 -900.91 -4.38 -12.52 16 8 C 0.06 1.04 5.10 86.32 0.44 1.48 16 9 C -0.11 -2.11 6.09 30.64 0.19 -1.92 16 10 C -0.13 -3.08 5.57 30.67 0.17 -2.91 16 11 C 0.15 3.62 2.61 45.04 0.12 3.74 16 12 H 0.07 2.19 7.59 -2.38 -0.02 2.17 16 13 N -0.71 -18.35 5.08 -442.28 -2.25 -20.60 16 14 C 0.54 20.02 7.81 87.66 0.68 20.70 16 15 O -0.56 -26.26 15.53 -3.04 -0.05 -26.31 16 16 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 17 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 18 C -0.55 -31.32 9.50 67.96 0.65 -30.68 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.71 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 22 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C 0.06 1.05 4.33 86.32 0.37 1.43 16 27 N -0.30 -5.12 11.25 -47.24 -0.53 -5.65 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.07 8.06 -2.39 -0.02 1.05 16 34 H 0.09 1.29 8.06 -2.39 -0.02 1.27 16 35 H 0.03 0.55 6.89 -2.39 -0.02 0.53 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.41 7.91 8.60 -92.71 -0.80 7.11 16 41 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 43 H 0.27 15.52 8.31 -92.72 -0.77 14.75 16 44 H 0.04 0.69 6.74 -2.39 -0.02 0.67 16 45 H 0.10 1.40 8.12 -2.38 -0.02 1.38 16 Total: -1.00 -82.08 383.81 -0.75 -82.84 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.20 Total: 18.92 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 6.68 Total: -7.12 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -8.45 Total: -104.58 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -82.08 -0.75 -82.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690032258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.454 kcal (2) G-P(sol) polarization free energy of solvation -82.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds