Wall clock time and date at job start Tue Mar 31 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35492 * 126.98090 * 2 1 4 4 N 1.30526 * 107.30727 * 179.97438 * 3 2 1 5 5 N 1.28597 * 109.67126 * 359.72727 * 4 3 2 6 6 C 1.30521 * 109.67247 * 0.45036 * 5 4 3 7 7 C 1.50694 * 126.34512 * 179.82377 * 6 5 4 8 8 N 1.46898 * 109.47295 * 269.68566 * 7 6 5 9 9 C 1.47450 * 111.00094 * 68.07061 * 8 7 6 10 10 C 1.54317 * 107.37127 * 236.66610 * 9 8 7 11 11 C 1.55395 * 102.89973 * 337.89150 * 10 9 8 12 12 C 1.47848 * 110.99884 * 307.23004 * 8 7 6 13 13 H 1.08992 * 110.37373 * 27.53182 * 12 8 7 14 14 C 1.53005 * 110.37219 * 265.18731 * 12 8 7 15 15 N 1.46500 * 109.46957 * 174.54559 * 14 12 8 16 16 C 1.34775 * 120.00011 * 184.82675 * 15 14 12 17 17 O 1.21279 * 120.00005 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00104 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47129 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99922 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99953 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99932 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99886 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99844 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46570 * 90.00323 * 24 22 20 26 26 H 1.48505 * 109.46912 * 210.00068 * 24 22 20 27 27 H 1.48495 * 109.47190 * 330.00194 * 24 22 20 28 28 H 1.08999 * 109.46998 * 270.00509 * 1 2 3 29 29 H 1.08999 * 109.46925 * 30.00028 * 1 2 3 30 30 H 1.09001 * 109.47236 * 150.00052 * 1 2 3 31 31 H 1.08002 * 126.34709 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.47319 * 149.69039 * 7 6 5 33 33 H 1.08996 * 109.47565 * 29.68865 * 7 6 5 34 34 H 1.09001 * 109.88264 * 356.15013 * 9 8 7 35 35 H 1.08990 * 109.88914 * 117.17353 * 9 8 7 36 36 H 1.08996 * 110.70744 * 96.17213 * 10 9 8 37 37 H 1.08997 * 110.70492 * 219.41360 * 10 9 8 38 38 H 1.09001 * 110.87213 * 277.39463 * 11 10 9 39 39 H 1.08994 * 111.03000 * 153.63664 * 11 10 9 40 40 H 1.08992 * 109.47311 * 294.55196 * 14 12 8 41 41 H 1.08998 * 109.46411 * 54.55193 * 14 12 8 42 42 H 0.96997 * 120.00135 * 4.83992 * 15 14 12 43 43 H 1.09007 * 109.46999 * 300.00461 * 18 16 15 44 44 H 1.08996 * 109.47440 * 60.00183 * 18 16 15 45 45 H 0.97002 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6429 0.0006 5 7 3.5091 -0.6430 0.0067 6 6 2.2800 -1.0824 0.0006 7 6 1.8477 -2.5260 0.0009 8 7 1.7076 -2.9955 -1.3840 9 6 3.0196 -3.0665 -2.0531 10 6 2.9392 -2.1881 -3.3194 11 6 1.4119 -2.1202 -3.5980 12 6 0.8303 -2.0953 -2.1624 13 1 0.8668 -1.0848 -1.7557 14 6 -0.6070 -2.6200 -2.1608 15 7 -1.4816 -1.6500 -2.8245 16 6 -2.8133 -1.8546 -2.8561 17 8 -3.2878 -2.8415 -2.3348 18 6 -3.7129 -0.8572 -3.5393 19 16 -5.4321 -1.4088 -3.4117 20 6 -6.2388 -0.0964 -4.2671 21 1 -5.6595 0.7182 -4.6759 22 6 -7.6188 -0.1097 -4.4156 23 7 -8.3249 -1.1024 -3.9169 24 14 -8.4740 1.2820 -5.3218 25 1 -8.5644 0.9500 -6.7664 26 1 -9.8403 1.4662 -4.7698 27 1 -7.6974 2.5359 -5.1496 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9702 2.1170 -0.0004 32 1 0.8906 -2.6186 0.5144 33 1 2.5957 -3.1293 0.5151 34 1 3.7959 -2.6881 -1.3881 35 1 3.2392 -4.0975 -2.3303 36 1 3.3394 -1.1933 -3.1244 37 1 3.4643 -2.6601 -4.1498 38 1 1.0763 -3.0044 -4.1399 39 1 1.1532 -1.2106 -4.1398 40 1 -0.6476 -3.5700 -2.6936 41 1 -0.9395 -2.7652 -1.1330 42 1 -1.1022 -0.8606 -3.2413 43 1 -3.6073 0.1158 -3.0593 44 1 -3.4340 -0.7762 -4.5898 45 1 -9.2893 -1.1114 -4.0203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691063120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:26 Heat of formation + Delta-G solvation = 62.022799 kcal Electronic energy + Delta-G solvation = -27506.205198 eV Core-core repulsion = 23687.030545 eV Total energy + Delta-G solvation = -3819.174653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.62139 -40.05284 -38.89794 -35.55055 -34.80883 -33.31722 -32.49073 -30.89622 -30.41819 -28.80813 -28.10222 -26.43202 -25.59882 -24.80363 -22.82262 -21.87621 -21.53332 -20.56834 -19.95367 -17.96161 -17.63195 -17.47042 -16.43580 -16.38033 -15.87518 -15.73428 -15.29545 -15.18041 -14.86184 -14.76744 -14.30167 -14.10923 -13.94156 -13.67562 -13.42119 -13.27922 -12.95812 -12.85892 -12.63713 -12.15120 -11.99384 -11.91331 -11.72908 -11.53025 -11.17991 -11.11932 -11.08547 -11.03273 -10.81976 -10.72079 -10.56886 -9.88421 -9.69963 -9.53394 -9.13628 -9.03687 -8.98826 -8.31334 -6.57367 -6.27924 -3.99141 1.37173 2.06078 2.48965 2.83445 2.97926 3.17555 3.19663 3.25113 3.41721 3.77220 3.85362 4.08025 4.14165 4.17849 4.20092 4.24179 4.50112 4.57489 4.60922 4.75603 4.81284 4.94408 5.00787 5.07427 5.09044 5.10046 5.15881 5.38945 5.41554 5.43904 5.52142 5.55584 5.57795 5.68415 5.74836 5.77858 5.82872 5.88755 6.03388 6.33201 6.39557 6.42710 6.53356 7.52698 7.54790 8.28675 8.35182 8.48513 9.17536 10.79425 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002416 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.063691 B =11585.150631 C =12175.341536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.469 5.469 3 C 0.150 3.850 4 N -0.298 5.298 5 N -0.285 5.285 6 C 0.141 3.859 7 C 0.131 3.869 8 N -0.502 5.502 9 C 0.037 3.963 10 C -0.139 4.139 11 C -0.124 4.124 12 C 0.043 3.957 13 H 0.068 0.932 14 C 0.134 3.866 15 N -0.741 5.741 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.218 0.782 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.395 0.605 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.372 1.472 5.726 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.160 5.160 3 C -0.138 4.138 4 N -0.137 5.137 5 N -0.127 5.127 6 C -0.128 4.128 7 C 0.000 4.000 8 N -0.225 5.225 9 C -0.090 4.090 10 C -0.177 4.177 11 C -0.162 4.162 12 C -0.066 4.066 13 H 0.085 0.915 14 C 0.010 3.990 15 N -0.397 5.397 16 C 0.319 3.681 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.234 0.766 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.228 0.772 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.659 -0.791 6.676 23.635 hybrid contribution -0.986 3.502 -1.370 3.887 sum 21.673 2.710 5.306 22.477 Atomic orbital electron populations 1.22492 0.74807 1.06464 1.05156 1.46400 1.09381 1.06760 1.53485 1.26524 0.87207 0.95137 1.04917 1.74263 1.18044 1.03287 1.18134 1.74252 1.17017 1.03305 1.18131 1.25986 0.87727 0.93721 1.05399 1.21123 1.03230 0.83456 0.92228 1.63673 1.11656 1.46335 1.00806 1.22930 0.90010 1.00835 0.95264 1.22771 0.96347 1.00305 0.98283 1.22828 0.94963 1.03110 0.95300 1.23141 0.93297 0.95448 0.94695 0.91452 1.21117 0.86585 0.92857 0.98453 1.46000 1.06821 1.26672 1.60213 1.20299 0.81517 0.86897 0.79427 1.90725 1.74536 1.29044 1.44255 1.23534 1.03366 1.00784 1.02770 1.85430 0.90484 1.32952 1.74324 1.22854 0.94565 1.09375 1.41710 0.90954 1.24993 0.96354 0.96696 0.95506 1.70013 1.07092 1.30391 1.42705 0.86172 0.78642 0.81129 0.79581 1.20237 1.20720 1.19713 0.89277 0.88354 0.87956 0.76566 0.88447 0.86782 0.90666 0.89753 0.91732 0.90337 0.89779 0.90779 0.90507 0.91263 0.77161 0.89357 0.89215 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.29 9.92 59.85 0.59 0.88 16 2 N -0.47 -3.57 2.51 -122.69 -0.31 -3.88 16 3 C 0.15 1.24 12.74 -89.94 -1.15 0.09 16 4 N -0.30 -3.52 12.21 29.69 0.36 -3.16 16 5 N -0.29 -3.37 11.43 32.79 0.37 -3.00 16 6 C 0.14 1.29 5.64 -154.99 -0.87 0.41 16 7 C 0.13 0.98 5.48 -4.98 -0.03 0.96 16 8 N -0.50 -4.05 5.07 -224.81 -1.14 -5.19 16 9 C 0.04 0.29 6.45 -2.83 -0.02 0.27 16 10 C -0.14 -1.08 6.97 -24.77 -0.17 -1.25 16 11 C -0.12 -0.97 6.29 -24.45 -0.15 -1.12 16 12 C 0.04 0.34 1.67 -66.18 -0.11 0.23 16 13 H 0.07 0.53 3.53 -51.93 -0.18 0.35 16 14 C 0.13 1.36 4.39 -4.04 -0.02 1.34 16 15 N -0.74 -8.21 5.38 -60.30 -0.32 -8.54 16 16 C 0.53 8.85 7.85 -10.99 -0.09 8.76 16 17 O -0.51 -10.74 15.86 5.56 0.09 -10.65 16 18 C -0.15 -2.84 6.16 36.00 0.22 -2.62 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.75 9.50 30.94 0.29 -14.45 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.51 13.22 55.49 0.73 -24.77 16 24 Si 0.92 20.80 29.55 -169.99 -5.02 15.78 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.66 4.03 -51.93 -0.21 0.45 16 31 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.10 0.63 7.85 -51.93 -0.41 0.22 16 33 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.07 0.67 6.55 -51.93 -0.34 0.33 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.70 7.97 -51.93 -0.41 0.29 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 41 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 42 H 0.40 3.35 8.38 -40.82 -0.34 3.01 16 43 H 0.09 1.46 8.14 -51.91 -0.42 1.04 16 44 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -35.83 376.92 -9.83 -45.66 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.47 Total: 0.32 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.59 Total: -4.53 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.30 Total: -48.53 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.83 -9.83 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691063120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.686 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds