Wall clock time and date at job start Tue Mar 31 2020 22:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35492 * 126.98090 * 2 1 4 4 N 1.30526 * 107.30727 * 179.97438 * 3 2 1 5 5 N 1.28597 * 109.67126 * 359.72727 * 4 3 2 6 6 C 1.30521 * 109.67247 * 0.45036 * 5 4 3 7 7 C 1.50694 * 126.34512 * 179.82377 * 6 5 4 8 8 N 1.46898 * 109.47295 * 269.68566 * 7 6 5 9 9 C 1.47450 * 111.00094 * 68.07061 * 8 7 6 10 10 C 1.54317 * 107.37127 * 236.66610 * 9 8 7 11 11 C 1.55395 * 102.89973 * 337.89150 * 10 9 8 12 12 C 1.47848 * 110.99884 * 307.23004 * 8 7 6 13 13 H 1.08992 * 110.37373 * 27.53182 * 12 8 7 14 14 C 1.53005 * 110.37219 * 265.18731 * 12 8 7 15 15 N 1.46500 * 109.46957 * 174.54559 * 14 12 8 16 16 C 1.34775 * 120.00011 * 184.82675 * 15 14 12 17 17 O 1.21279 * 120.00005 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00104 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47129 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99922 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99953 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99932 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99886 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99844 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46570 * 90.00323 * 24 22 20 26 26 H 1.48505 * 109.46912 * 210.00068 * 24 22 20 27 27 H 1.48495 * 109.47190 * 330.00194 * 24 22 20 28 28 H 1.08999 * 109.46998 * 270.00509 * 1 2 3 29 29 H 1.08999 * 109.46925 * 30.00028 * 1 2 3 30 30 H 1.09001 * 109.47236 * 150.00052 * 1 2 3 31 31 H 1.08002 * 126.34709 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.47319 * 149.69039 * 7 6 5 33 33 H 1.08996 * 109.47565 * 29.68865 * 7 6 5 34 34 H 1.09001 * 109.88264 * 356.15013 * 9 8 7 35 35 H 1.08990 * 109.88914 * 117.17353 * 9 8 7 36 36 H 1.08996 * 110.70744 * 96.17213 * 10 9 8 37 37 H 1.08997 * 110.70492 * 219.41360 * 10 9 8 38 38 H 1.09001 * 110.87213 * 277.39463 * 11 10 9 39 39 H 1.08994 * 111.03000 * 153.63664 * 11 10 9 40 40 H 1.08992 * 109.47311 * 294.55196 * 14 12 8 41 41 H 1.08998 * 109.46411 * 54.55193 * 14 12 8 42 42 H 0.96997 * 120.00135 * 4.83992 * 15 14 12 43 43 H 1.09007 * 109.46999 * 300.00461 * 18 16 15 44 44 H 1.08996 * 109.47440 * 60.00183 * 18 16 15 45 45 H 0.97002 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6429 0.0006 5 7 3.5091 -0.6430 0.0067 6 6 2.2800 -1.0824 0.0006 7 6 1.8477 -2.5260 0.0009 8 7 1.7076 -2.9955 -1.3840 9 6 3.0196 -3.0665 -2.0531 10 6 2.9392 -2.1881 -3.3194 11 6 1.4119 -2.1202 -3.5980 12 6 0.8303 -2.0953 -2.1624 13 1 0.8668 -1.0848 -1.7557 14 6 -0.6070 -2.6200 -2.1608 15 7 -1.4816 -1.6500 -2.8245 16 6 -2.8133 -1.8546 -2.8561 17 8 -3.2878 -2.8415 -2.3348 18 6 -3.7129 -0.8572 -3.5393 19 16 -5.4321 -1.4088 -3.4117 20 6 -6.2388 -0.0964 -4.2671 21 1 -5.6595 0.7182 -4.6759 22 6 -7.6188 -0.1097 -4.4156 23 7 -8.3249 -1.1024 -3.9169 24 14 -8.4740 1.2820 -5.3218 25 1 -8.5644 0.9500 -6.7664 26 1 -9.8403 1.4662 -4.7698 27 1 -7.6974 2.5359 -5.1496 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9702 2.1170 -0.0004 32 1 0.8906 -2.6186 0.5144 33 1 2.5957 -3.1293 0.5151 34 1 3.7959 -2.6881 -1.3881 35 1 3.2392 -4.0975 -2.3303 36 1 3.3394 -1.1933 -3.1244 37 1 3.4643 -2.6601 -4.1498 38 1 1.0763 -3.0044 -4.1399 39 1 1.1532 -1.2106 -4.1398 40 1 -0.6476 -3.5700 -2.6936 41 1 -0.9395 -2.7652 -1.1330 42 1 -1.1022 -0.8606 -3.2413 43 1 -3.6073 0.1158 -3.0593 44 1 -3.4340 -0.7762 -4.5898 45 1 -9.2893 -1.1114 -4.0203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691063120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:25 Heat of formation + Delta-G solvation = 36.713441 kcal Electronic energy + Delta-G solvation = -27507.302694 eV Core-core repulsion = 23687.030545 eV Total energy + Delta-G solvation = -3820.272149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.28262 -40.96212 -39.98830 -36.19026 -35.86796 -34.56460 -33.99212 -32.00068 -31.11197 -29.96190 -28.61701 -27.66420 -27.07127 -25.69993 -23.46134 -22.55283 -22.26060 -21.68293 -20.75795 -19.77163 -18.31250 -18.16771 -17.71739 -17.26907 -16.86099 -16.71575 -16.56015 -16.26935 -16.07023 -15.68286 -15.36913 -15.12580 -14.79340 -14.61708 -14.40721 -14.25219 -13.98569 -13.79809 -13.53344 -13.25935 -13.14325 -12.88812 -12.81408 -12.66618 -12.57539 -12.39208 -12.16053 -11.93185 -11.71365 -11.67628 -11.39224 -11.16822 -11.12860 -10.96027 -10.40800 -10.23816 -10.14134 -9.65350 -8.63556 -8.33157 -6.10218 0.75518 1.28268 1.43254 1.48194 1.51073 1.57701 1.64431 1.79191 2.15515 2.29261 2.92304 3.01396 3.20728 3.34569 3.45703 3.53790 3.62288 3.78393 3.88310 3.97465 4.00443 4.09470 4.13761 4.22590 4.32403 4.37370 4.46851 4.52814 4.55207 4.60594 4.70034 4.77542 4.78256 4.85659 4.93868 4.98848 5.04321 5.12382 5.24481 5.36528 5.43999 5.75423 5.81282 5.84375 6.21508 6.48049 7.08858 7.25262 7.66718 8.75763 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002416 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.063691 B =11585.150631 C =12175.341536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.466 5.466 3 C 0.161 3.839 4 N -0.344 5.344 5 N -0.320 5.320 6 C 0.142 3.858 7 C 0.131 3.869 8 N -0.506 5.506 9 C 0.039 3.961 10 C -0.133 4.133 11 C -0.124 4.124 12 C 0.053 3.947 13 H 0.075 0.925 14 C 0.141 3.859 15 N -0.711 5.711 16 C 0.539 3.461 17 O -0.561 6.561 18 C -0.130 4.130 19 S -0.150 6.150 20 C -0.544 4.544 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.257 1.257 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.254 0.746 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.413 0.587 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.025 3.503 4.978 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.157 5.157 3 C -0.128 4.128 4 N -0.183 5.183 5 N -0.161 5.161 6 C -0.129 4.129 7 C 0.000 4.000 8 N -0.229 5.229 9 C -0.088 4.088 10 C -0.171 4.171 11 C -0.162 4.162 12 C -0.055 4.055 13 H 0.092 0.908 14 C 0.017 3.983 15 N -0.365 5.365 16 C 0.325 3.675 17 O -0.439 6.439 18 C -0.281 4.281 19 S 0.077 5.923 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.180 1.180 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.269 0.731 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.250 0.750 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.375 1.266 5.918 24.146 hybrid contribution -1.063 2.850 -1.097 3.234 sum 22.312 4.117 4.821 23.195 Atomic orbital electron populations 1.22665 0.73357 1.06961 1.06145 1.46522 1.10097 1.06169 1.52881 1.27189 0.86373 0.96528 1.02682 1.74183 1.20201 1.03551 1.20320 1.74171 1.18615 1.03711 1.19570 1.26150 0.87447 0.94495 1.04783 1.21217 1.03932 0.82853 0.92006 1.63649 1.11711 1.46393 1.01104 1.22916 0.89565 1.01218 0.95128 1.22709 0.96417 0.99516 0.98500 1.22851 0.94823 1.03503 0.95005 1.23005 0.91843 0.95552 0.95145 0.90759 1.21104 0.87428 0.91985 0.97820 1.45621 1.04927 1.27148 1.58847 1.19968 0.82867 0.85772 0.78921 1.90722 1.75707 1.30853 1.46573 1.23373 0.98169 1.02044 1.04539 1.85615 0.97138 1.34735 1.74836 1.23202 0.95151 1.09466 1.41385 0.89844 1.26089 0.97274 0.99430 0.96325 1.70180 1.07387 1.32766 1.44455 0.84995 0.77289 0.77913 0.78055 1.19549 1.20513 1.18045 0.88184 0.86212 0.88949 0.73056 0.87315 0.86378 0.91748 0.89056 0.93146 0.89315 0.90076 0.89731 0.91884 0.91554 0.75034 0.86771 0.87404 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.40 9.92 127.77 1.27 1.67 16 2 N -0.47 -6.07 2.51 -542.08 -1.36 -7.43 16 3 C 0.16 2.31 12.74 180.11 2.30 4.61 16 4 N -0.34 -7.86 12.21 -59.99 -0.73 -8.60 16 5 N -0.32 -7.43 11.43 -50.16 -0.57 -8.00 16 6 C 0.14 2.42 5.64 137.98 0.78 3.20 16 7 C 0.13 1.82 5.48 85.56 0.47 2.28 16 8 N -0.51 -7.50 5.07 -865.17 -4.38 -11.88 16 9 C 0.04 0.58 6.45 86.64 0.56 1.14 16 10 C -0.13 -1.88 6.97 31.86 0.22 -1.66 16 11 C -0.12 -1.67 6.29 32.07 0.20 -1.47 16 12 C 0.05 0.75 1.67 45.39 0.08 0.82 16 13 H 0.07 0.98 3.53 -2.39 -0.01 0.97 16 14 C 0.14 2.61 4.39 86.38 0.38 2.99 16 15 N -0.71 -13.97 5.38 -463.07 -2.49 -16.47 16 16 C 0.54 17.09 7.85 87.66 0.69 17.78 16 17 O -0.56 -23.52 15.86 -3.03 -0.05 -23.57 16 18 C -0.13 -4.55 6.16 71.23 0.44 -4.11 16 19 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 20 C -0.54 -29.62 9.50 67.95 0.65 -28.98 16 21 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 22 C 0.01 0.75 5.49 84.86 0.47 1.22 16 23 N -0.91 -54.49 13.22 21.65 0.29 -54.20 16 24 Si 1.00 42.04 29.55 68.60 2.03 44.07 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.95 4.03 -2.39 -0.01 0.94 16 31 H 0.25 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.11 1.25 7.85 -2.39 -0.02 1.23 16 33 H 0.12 1.53 8.08 -2.39 -0.02 1.51 16 34 H 0.06 1.13 6.55 -2.39 -0.02 1.11 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.18 7.97 -2.39 -0.02 1.16 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.41 8.02 -2.39 -0.02 1.40 16 41 H 0.07 1.33 7.53 -2.39 -0.02 1.32 16 42 H 0.41 5.48 8.38 -92.71 -0.78 4.70 16 43 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.11 3.42 8.14 -2.40 -0.02 3.40 16 45 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -80.50 376.92 0.29 -80.20 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.24 Total: 15.42 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 8.49 Total: -0.51 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -9.25 Total: -106.58 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -80.50 0.29 -80.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691063120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.918 kcal (2) G-P(sol) polarization free energy of solvation -80.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds