Wall clock time and date at job start Tue Mar 31 2020 22:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40443 * 126.82229 * 2 1 4 4 C 1.30710 * 106.79252 * 179.97438 * 3 2 1 5 5 N 1.33239 * 108.95003 * 359.76197 * 4 3 2 6 6 C 1.30837 * 109.82649 * 0.40547 * 5 4 3 7 7 C 1.50694 * 125.96122 * 179.87082 * 6 5 4 8 8 N 1.46903 * 109.47135 * 269.68258 * 7 6 5 9 9 C 1.46897 * 111.00106 * 180.02562 * 8 7 6 10 10 H 1.08994 * 112.91030 * 23.75414 * 9 8 7 11 11 C 1.53787 * 113.61213 * 155.00606 * 9 8 7 12 12 C 1.53779 * 87.07963 * 139.98051 * 11 9 8 13 13 H 1.09006 * 113.61280 * 89.11401 * 12 11 9 14 14 C 1.52998 * 113.61250 * 220.01477 * 12 11 9 15 15 N 1.46496 * 109.47269 * 185.00070 * 14 12 11 16 16 C 1.34783 * 120.00322 * 180.02562 * 15 14 12 17 17 O 1.21275 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99846 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46714 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00107 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00191 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00215 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99854 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99949 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46861 * 59.99706 * 24 22 20 26 26 H 1.48496 * 109.46790 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46855 * 299.99402 * 24 22 20 28 28 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 29 29 H 1.09001 * 109.47287 * 270.04013 * 1 2 3 30 30 H 1.08999 * 109.47394 * 30.03852 * 1 2 3 31 31 H 1.09005 * 109.47465 * 150.04226 * 1 2 3 32 32 H 1.08006 * 125.52684 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47256 * 149.68830 * 7 6 5 34 34 H 1.08998 * 109.47421 * 29.68686 * 7 6 5 35 35 H 1.00893 * 111.00088 * 303.96061 * 8 7 6 36 36 H 1.08997 * 113.61028 * 254.53011 * 11 9 8 37 37 H 1.08998 * 113.61447 * 25.34545 * 11 9 8 38 38 H 1.09007 * 109.47269 * 305.00322 * 14 12 11 39 39 H 1.08998 * 109.47235 * 64.99931 * 14 12 11 40 40 H 0.97001 * 120.00291 * 359.97438 * 15 14 12 41 41 H 1.08999 * 109.47042 * 299.99257 * 18 16 15 42 42 H 1.09000 * 109.47482 * 60.00182 * 18 16 15 43 43 H 0.96999 * 119.99876 * 180.02562 * 23 22 20 44 44 H 1.09002 * 113.61557 * 270.88569 * 28 12 11 45 45 H 1.09004 * 113.61501 * 139.97990 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5347 0.6766 0.0006 5 7 3.5096 -0.6556 0.0061 6 6 2.2707 -1.0761 0.0005 7 6 1.8247 -2.5155 0.0013 8 7 1.6798 -2.9840 -1.3835 9 6 1.2447 -4.3865 -1.4220 10 1 0.7254 -4.6947 -0.5146 11 6 0.5039 -4.7664 -2.7150 12 6 1.2673 -6.1004 -2.6673 13 1 0.7541 -6.8772 -2.1003 14 6 1.7461 -6.5819 -4.0384 15 7 2.3527 -7.9087 -3.9056 16 6 2.8488 -8.5347 -4.9913 17 8 2.7934 -7.9993 -6.0780 18 6 3.4723 -9.8998 -4.8546 19 16 4.0402 -10.4686 -6.4764 20 6 4.7059 -12.0389 -6.0340 21 1 4.6747 -12.3685 -5.0060 22 6 5.2715 -12.8519 -7.0065 23 7 5.3101 -12.4500 -8.2594 24 14 5.9780 -14.5163 -6.5373 25 1 4.9086 -15.3582 -5.9433 26 1 6.5176 -15.1842 -7.7489 27 1 7.0687 -14.3297 -5.5471 28 6 2.3491 -5.3624 -1.8613 29 1 -0.3634 0.0007 1.0277 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3634 -0.8904 -0.5132 32 1 4.4255 1.2874 0.0011 33 1 0.8671 -2.5990 0.5151 34 1 2.5673 -3.1257 0.5155 35 1 1.0447 -2.3944 -1.9001 36 1 -0.5730 -4.8746 -2.5854 37 1 0.7668 -4.1415 -3.5685 38 1 0.8978 -6.6368 -4.7208 39 1 2.4840 -5.8827 -4.4317 40 1 2.3981 -8.3365 -3.0362 41 1 4.3202 -9.8453 -4.1718 42 1 2.7339 -10.5989 -4.4621 43 1 5.7050 -13.0183 -8.9391 44 1 3.1176 -4.9014 -2.4818 45 1 2.7619 -5.9518 -1.0425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691424995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:48 Heat of formation + Delta-G solvation = 76.123295 kcal Electronic energy + Delta-G solvation = -25165.063866 eV Core-core repulsion = 21346.500657 eV Total energy + Delta-G solvation = -3818.563210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.54853 -40.01320 -38.78099 -35.84536 -34.50121 -33.86646 -32.40649 -31.60106 -29.81689 -28.17253 -27.23713 -26.21983 -25.65404 -25.33716 -22.46598 -21.96616 -21.05298 -20.49507 -19.63699 -17.82366 -17.49421 -16.84961 -16.50996 -16.24016 -16.13254 -15.52933 -15.31274 -15.21071 -14.95250 -14.78379 -14.14532 -13.93788 -13.84477 -13.74608 -13.57645 -13.34067 -13.08367 -12.76185 -12.57450 -12.52657 -12.07979 -12.02105 -11.69472 -11.20410 -11.03227 -11.02140 -10.99585 -10.73334 -10.61547 -10.42234 -10.20093 -10.05621 -9.79955 -9.34897 -9.08530 -9.04140 -8.81489 -8.21133 -6.47425 -6.19320 -3.89800 1.07358 1.77953 2.49202 3.06853 3.15090 3.25100 3.29179 3.32933 3.42989 3.71630 3.74996 3.88783 4.08188 4.21878 4.22788 4.34984 4.44425 4.45967 4.48464 4.53644 4.73857 4.82566 4.92264 5.01553 5.08481 5.15647 5.22089 5.34277 5.44095 5.56675 5.60905 5.68912 5.80754 5.86427 5.88257 5.93730 5.98577 6.03521 6.17072 6.25710 6.46432 6.64991 6.68527 7.61303 7.66745 7.76320 8.37136 8.66679 9.25753 10.88055 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.001461 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.333768 B =19166.643903 C =19490.784549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 N -0.321 5.321 4 C 0.201 3.799 5 N -0.524 5.524 6 C 0.280 3.720 7 C 0.138 3.862 8 N -0.666 5.666 9 C 0.058 3.942 10 H 0.078 0.922 11 C -0.131 4.131 12 C -0.122 4.122 13 H 0.096 0.904 14 C 0.134 3.866 15 N -0.738 5.738 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.119 4.119 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.219 0.781 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.341 0.659 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.096 0.904 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 23.025 21.651 34.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.173 5.173 3 N -0.149 5.149 4 C -0.102 4.102 5 N -0.251 5.251 6 C 0.003 3.997 7 C 0.007 3.993 8 N -0.299 5.299 9 C -0.051 4.051 10 H 0.096 0.904 11 C -0.170 4.170 12 C -0.141 4.141 13 H 0.115 0.885 14 C 0.009 3.991 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.157 4.157 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.235 0.765 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.160 0.840 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.980 24.314 19.578 33.807 hybrid contribution -0.553 -1.779 2.270 2.936 sum -13.533 22.535 21.848 34.180 Atomic orbital electron populations 1.21954 0.73969 1.04933 1.03942 1.50311 1.07909 1.04141 1.54930 1.78069 1.02282 1.07993 1.26556 1.26043 0.95771 0.90467 0.97939 1.70512 1.19499 1.11321 1.23789 1.24191 0.86389 0.92139 0.96953 1.20445 1.00903 0.86091 0.91868 1.60533 1.54773 1.03294 1.11272 1.23091 0.97257 0.87120 0.97636 0.90375 1.23202 0.99129 0.96874 0.97795 1.22625 0.98321 0.96575 0.96620 0.88530 1.21234 0.97803 0.84359 0.95657 1.45982 1.62988 1.19322 1.10912 1.20302 0.77337 0.86916 0.83790 1.90700 1.55602 1.66726 1.26316 1.23529 1.03082 0.95620 1.08174 1.85398 1.75751 1.20337 1.01923 1.22837 1.45203 1.03321 0.97110 0.90986 1.24989 0.95406 0.98689 0.94462 1.70010 1.42383 1.37343 1.00559 0.86227 0.79224 0.82067 0.77995 1.19968 1.20817 1.19938 1.23188 0.96669 0.96040 0.99804 0.90057 0.88613 0.89365 0.76474 0.92802 0.86965 0.83962 0.91048 0.88796 0.91717 0.91368 0.76895 0.89236 0.89296 0.92144 0.88592 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.16 59.85 0.67 0.93 16 2 N -0.38 -2.79 4.04 -65.10 -0.26 -3.05 16 3 N -0.32 -3.07 12.70 29.29 0.37 -2.69 16 4 C 0.20 1.82 13.03 -91.82 -1.20 0.62 16 5 N -0.52 -5.45 11.19 -11.97 -0.13 -5.58 16 6 C 0.28 2.25 7.50 -155.69 -1.17 1.08 16 7 C 0.14 0.72 5.65 -4.98 -0.03 0.70 16 8 N -0.67 -3.81 6.55 -107.13 -0.70 -4.51 16 9 C 0.06 0.29 4.14 -66.90 -0.28 0.02 16 10 H 0.08 0.29 7.87 -51.93 -0.41 -0.11 16 11 C -0.13 -0.71 7.21 -25.92 -0.19 -0.90 16 12 C -0.12 -0.84 3.75 -89.81 -0.34 -1.18 16 13 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 14 C 0.13 1.47 5.51 -4.04 -0.02 1.45 16 15 N -0.74 -9.56 5.56 -60.30 -0.33 -9.90 16 16 C 0.53 9.92 7.85 -10.98 -0.09 9.84 16 17 O -0.52 -11.94 15.86 5.56 0.09 -11.85 16 18 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.12 -0.83 7.43 -25.92 -0.19 -1.02 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.05 7.72 -51.93 -0.40 -0.35 16 32 H 0.22 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.05 0.14 7.75 -51.93 -0.40 -0.26 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.34 1.66 8.54 -39.30 -0.34 1.33 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 40 H 0.40 3.94 8.47 -40.82 -0.35 3.60 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.10 0.87 7.90 -51.93 -0.41 0.46 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -38.54 396.57 -10.81 -49.34 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.90 Total: -0.33 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.41 Total: -4.39 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.33 Total: -51.29 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.54 -10.81 -49.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691424995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.468 kcal (2) G-P(sol) polarization free energy of solvation -38.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds