Wall clock time and date at job start Tue Mar 31 2020 22:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40443 * 126.82229 * 2 1 4 4 C 1.30710 * 106.79252 * 179.97438 * 3 2 1 5 5 N 1.33239 * 108.95003 * 359.76197 * 4 3 2 6 6 C 1.30837 * 109.82649 * 0.40547 * 5 4 3 7 7 C 1.50694 * 125.96122 * 179.87082 * 6 5 4 8 8 N 1.46903 * 109.47135 * 269.68258 * 7 6 5 9 9 C 1.46897 * 111.00106 * 180.02562 * 8 7 6 10 10 H 1.08994 * 112.91030 * 23.75414 * 9 8 7 11 11 C 1.53787 * 113.61213 * 155.00606 * 9 8 7 12 12 C 1.53779 * 87.07963 * 139.98051 * 11 9 8 13 13 H 1.09006 * 113.61280 * 89.11401 * 12 11 9 14 14 C 1.52998 * 113.61250 * 220.01477 * 12 11 9 15 15 N 1.46496 * 109.47269 * 185.00070 * 14 12 11 16 16 C 1.34783 * 120.00322 * 180.02562 * 15 14 12 17 17 O 1.21275 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99846 * 180.02562 * 16 15 14 19 19 S 1.81001 * 109.46714 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00107 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00191 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00215 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99854 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99949 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46861 * 59.99706 * 24 22 20 26 26 H 1.48496 * 109.46790 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46855 * 299.99402 * 24 22 20 28 28 C 1.53779 * 87.08402 * 334.56577 * 12 11 9 29 29 H 1.09001 * 109.47287 * 270.04013 * 1 2 3 30 30 H 1.08999 * 109.47394 * 30.03852 * 1 2 3 31 31 H 1.09005 * 109.47465 * 150.04226 * 1 2 3 32 32 H 1.08006 * 125.52684 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.47256 * 149.68830 * 7 6 5 34 34 H 1.08998 * 109.47421 * 29.68686 * 7 6 5 35 35 H 1.00893 * 111.00088 * 303.96061 * 8 7 6 36 36 H 1.08997 * 113.61028 * 254.53011 * 11 9 8 37 37 H 1.08998 * 113.61447 * 25.34545 * 11 9 8 38 38 H 1.09007 * 109.47269 * 305.00322 * 14 12 11 39 39 H 1.08998 * 109.47235 * 64.99931 * 14 12 11 40 40 H 0.97001 * 120.00291 * 359.97438 * 15 14 12 41 41 H 1.08999 * 109.47042 * 299.99257 * 18 16 15 42 42 H 1.09000 * 109.47482 * 60.00182 * 18 16 15 43 43 H 0.96999 * 119.99876 * 180.02562 * 23 22 20 44 44 H 1.09002 * 113.61557 * 270.88569 * 28 12 11 45 45 H 1.09004 * 113.61501 * 139.97990 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5347 0.6766 0.0006 5 7 3.5096 -0.6556 0.0061 6 6 2.2707 -1.0761 0.0005 7 6 1.8247 -2.5155 0.0013 8 7 1.6798 -2.9840 -1.3835 9 6 1.2447 -4.3865 -1.4220 10 1 0.7254 -4.6947 -0.5146 11 6 0.5039 -4.7664 -2.7150 12 6 1.2673 -6.1004 -2.6673 13 1 0.7541 -6.8772 -2.1003 14 6 1.7461 -6.5819 -4.0384 15 7 2.3527 -7.9087 -3.9056 16 6 2.8488 -8.5347 -4.9913 17 8 2.7934 -7.9993 -6.0780 18 6 3.4723 -9.8998 -4.8546 19 16 4.0402 -10.4686 -6.4764 20 6 4.7059 -12.0389 -6.0340 21 1 4.6747 -12.3685 -5.0060 22 6 5.2715 -12.8519 -7.0065 23 7 5.3101 -12.4500 -8.2594 24 14 5.9780 -14.5163 -6.5373 25 1 4.9086 -15.3582 -5.9433 26 1 6.5176 -15.1842 -7.7489 27 1 7.0687 -14.3297 -5.5471 28 6 2.3491 -5.3624 -1.8613 29 1 -0.3634 0.0007 1.0277 30 1 -0.3634 0.8896 -0.5144 31 1 -0.3634 -0.8904 -0.5132 32 1 4.4255 1.2874 0.0011 33 1 0.8671 -2.5990 0.5151 34 1 2.5673 -3.1257 0.5155 35 1 1.0447 -2.3944 -1.9001 36 1 -0.5730 -4.8746 -2.5854 37 1 0.7668 -4.1415 -3.5685 38 1 0.8978 -6.6368 -4.7208 39 1 2.4840 -5.8827 -4.4317 40 1 2.3981 -8.3365 -3.0362 41 1 4.3202 -9.8453 -4.1718 42 1 2.7339 -10.5989 -4.4621 43 1 5.7050 -13.0183 -8.9391 44 1 3.1176 -4.9014 -2.4818 45 1 2.7619 -5.9518 -1.0425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691424995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:47 Heat of formation + Delta-G solvation = 47.505235 kcal Electronic energy + Delta-G solvation = -25166.304838 eV Core-core repulsion = 21346.500657 eV Total energy + Delta-G solvation = -3819.804182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.11001 -40.86018 -39.91668 -36.48661 -35.23066 -34.70663 -34.56651 -32.25651 -31.20701 -28.72646 -28.03634 -27.56709 -26.72684 -26.12507 -23.03621 -22.60925 -21.82581 -21.53568 -20.33279 -19.73478 -17.96827 -17.79172 -17.53650 -17.08642 -16.86510 -16.76252 -16.55158 -16.32071 -15.78561 -15.69252 -15.49677 -14.96634 -14.68862 -14.44735 -14.29839 -14.19673 -14.05544 -13.76696 -13.45661 -13.26945 -13.15552 -13.07329 -12.84994 -12.63220 -12.53965 -12.44903 -11.79605 -11.75088 -11.55784 -11.15624 -11.11434 -11.05754 -10.87872 -10.77038 -10.58951 -10.26193 -10.05086 -9.44420 -8.65544 -8.33013 -6.11447 0.52175 1.28802 1.37431 1.45333 1.48669 1.58559 1.64836 1.88082 2.28410 2.35103 2.99409 3.00989 3.31206 3.33982 3.52420 3.60808 3.72751 3.82717 3.96368 3.98566 4.07677 4.19194 4.32392 4.33149 4.35395 4.49851 4.51811 4.53119 4.56819 4.63539 4.77080 4.89178 4.94638 5.00743 5.18886 5.27799 5.31251 5.40598 5.41965 5.42892 5.55624 5.80571 6.07553 6.20983 6.30464 6.56519 7.07973 7.08594 7.29624 8.76000 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.001461 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.333768 B =19166.643903 C =19490.784549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.379 5.379 3 N -0.350 5.350 4 C 0.189 3.811 5 N -0.565 5.565 6 C 0.277 3.723 7 C 0.144 3.856 8 N -0.683 5.683 9 C 0.073 3.927 10 H 0.105 0.895 11 C -0.125 4.125 12 C -0.113 4.113 13 H 0.119 0.881 14 C 0.132 3.868 15 N -0.709 5.709 16 C 0.530 3.470 17 O -0.571 6.571 18 C -0.129 4.129 19 S -0.155 6.155 20 C -0.548 4.548 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.262 1.262 28 C -0.126 4.126 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.239 0.761 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.347 0.653 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.417 0.583 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 22.130 24.721 36.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.170 5.170 3 N -0.178 5.178 4 C -0.113 4.113 5 N -0.294 5.294 6 C 0.000 4.000 7 C 0.013 3.987 8 N -0.316 5.316 9 C -0.036 4.036 10 H 0.123 0.877 11 C -0.164 4.164 12 C -0.132 4.132 13 H 0.137 0.863 14 C 0.008 3.992 15 N -0.363 5.363 16 C 0.316 3.684 17 O -0.449 6.449 18 C -0.280 4.280 19 S 0.072 5.928 20 C -0.696 4.696 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.165 4.165 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.255 0.745 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.167 0.833 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.254 0.746 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.693 23.439 22.716 35.795 hybrid contribution -0.108 -1.384 1.376 1.955 sum -14.801 22.055 24.092 35.860 Atomic orbital electron populations 1.22353 0.71482 1.06414 1.05478 1.50558 1.09237 1.03338 1.53913 1.77982 1.02793 1.09570 1.27488 1.26513 0.96524 0.90545 0.97710 1.70483 1.21357 1.12101 1.25418 1.24663 0.86044 0.93305 0.96027 1.20526 1.02294 0.84123 0.91802 1.60413 1.55564 1.03801 1.11856 1.23010 0.95913 0.86308 0.98345 0.87732 1.23160 1.00226 0.95312 0.97670 1.22622 0.98794 0.97773 0.93981 0.86254 1.21390 0.96755 0.82603 0.98414 1.45747 1.60754 1.19590 1.10210 1.20104 0.77478 0.86493 0.84320 1.90687 1.57990 1.67722 1.28548 1.23373 1.04284 0.96873 1.03487 1.85598 1.76746 1.21591 1.08869 1.23189 1.45240 1.03348 0.97778 0.89820 1.26142 0.95557 1.03240 0.94209 1.70184 1.43503 1.39162 1.01962 0.84994 0.78730 0.76304 0.77904 1.18557 1.20439 1.18682 1.23175 0.96661 0.96942 0.99675 0.88437 0.88465 0.86646 0.74537 0.89317 0.87618 0.83313 0.88952 0.90075 0.92553 0.93314 0.74607 0.87287 0.87045 0.92015 0.91401 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 11.16 127.77 1.43 1.69 16 2 N -0.38 -5.06 4.04 -359.87 -1.45 -6.52 16 3 N -0.35 -6.62 12.70 -61.24 -0.78 -7.40 16 4 C 0.19 3.48 13.03 180.77 2.36 5.84 16 5 N -0.57 -11.76 11.19 -191.78 -2.15 -13.90 16 6 C 0.28 4.13 7.50 138.22 1.04 5.16 16 7 C 0.14 1.14 5.65 85.55 0.48 1.63 16 8 N -0.68 -6.27 6.55 -492.86 -3.23 -9.50 16 9 C 0.07 0.50 4.14 45.45 0.19 0.69 16 10 H 0.11 0.25 7.87 -2.39 -0.02 0.23 16 11 C -0.13 -0.99 7.21 31.12 0.22 -0.77 16 12 C -0.11 -1.25 3.75 -10.27 -0.04 -1.29 16 13 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 14 C 0.13 2.78 5.51 86.38 0.48 3.25 16 15 N -0.71 -17.26 5.56 -463.07 -2.57 -19.84 16 16 C 0.53 19.68 7.85 87.65 0.69 20.37 16 17 O -0.57 -27.04 15.86 -3.01 -0.05 -27.09 16 18 C -0.13 -5.11 6.16 71.23 0.44 -4.67 16 19 S -0.16 -8.71 20.57 -56.49 -1.16 -9.87 16 20 C -0.55 -31.44 9.50 67.96 0.65 -30.79 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 24 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 28 C -0.13 -1.50 7.43 31.12 0.23 -1.27 16 29 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.12 -0.28 7.72 -2.38 -0.02 -0.30 16 32 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.09 0.09 7.75 -2.39 -0.02 0.07 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.35 2.56 8.54 -89.70 -0.77 1.79 16 36 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.05 1.24 7.84 -2.39 -0.02 1.22 16 40 H 0.42 7.01 8.47 -92.71 -0.79 6.22 16 41 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.07 1.22 7.90 -2.39 -0.02 1.20 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -88.35 396.57 -0.99 -89.34 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -0.53 Total: 14.18 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 8.62 Total: 1.06 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -9.89 Total: -113.27 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -88.35 -0.99 -89.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691424995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.845 kcal (2) G-P(sol) polarization free energy of solvation -88.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds