Wall clock time and date at job start Tue Mar 31 2020 22:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28605 * 124.61529 * 2 1 4 4 C 1.31375 * 108.71435 * 179.97438 * 3 2 1 5 5 C 1.39678 * 105.90300 * 359.97438 * 4 3 2 6 6 C 1.50701 * 127.04800 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47037 * 95.00391 * 6 5 4 8 8 C 1.46901 * 111.00015 * 179.97438 * 7 6 5 9 9 H 1.09003 * 112.84772 * 25.32848 * 8 7 6 10 10 C 1.53783 * 113.61337 * 156.52321 * 8 7 6 11 11 C 1.53791 * 87.07608 * 139.98223 * 10 8 7 12 12 H 1.08996 * 113.60804 * 219.93147 * 11 10 8 13 13 C 1.52998 * 113.61433 * 89.11706 * 11 10 8 14 14 N 1.46500 * 109.46726 * 174.99587 * 13 11 10 15 15 C 1.34781 * 119.99507 * 179.97438 * 14 13 11 16 16 O 1.21282 * 120.00555 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99685 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47095 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99908 * 179.97438 * 18 17 15 20 20 H 1.08007 * 120.00277 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00127 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99549 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00223 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47199 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46964 * 120.00356 * 23 21 19 26 26 H 1.48495 * 109.47371 * 240.00098 * 23 21 19 27 27 C 1.53778 * 113.61432 * 254.13191 * 8 7 6 28 28 N 1.28599 * 124.62056 * 179.69415 * 2 1 3 29 29 H 1.09001 * 109.47060 * 90.03269 * 1 2 3 30 30 H 1.09004 * 109.47073 * 210.02758 * 1 2 3 31 31 H 1.09000 * 109.47212 * 330.02841 * 1 2 3 32 32 H 1.08001 * 127.05004 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.46800 * 214.99425 * 6 5 4 34 34 H 1.08995 * 109.47257 * 335.00040 * 6 5 4 35 35 H 1.00908 * 110.99425 * 303.94303 * 7 6 5 36 36 H 1.09000 * 113.61250 * 254.52083 * 10 8 7 37 37 H 1.08996 * 113.61590 * 25.35018 * 10 8 7 38 38 H 1.08997 * 109.47174 * 294.99941 * 13 11 10 39 39 H 1.08997 * 109.47494 * 54.99934 * 13 11 10 40 40 H 0.96997 * 120.00239 * 359.97438 * 14 13 11 41 41 H 1.08997 * 109.47434 * 300.00324 * 17 15 14 42 42 H 1.09001 * 109.47302 * 60.00043 * 17 15 14 43 43 H 0.96998 * 119.99668 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.61511 * 334.56560 * 27 8 7 45 45 H 1.09002 * 113.61703 * 105.46713 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6985 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6620 -1.6062 0.0030 7 7 4.9791 -1.9967 1.3832 8 6 6.1487 -2.8846 1.4236 9 1 6.8113 -2.7509 0.5685 10 6 6.8800 -2.8788 2.7764 11 6 7.0471 -4.3978 2.6034 12 1 6.9059 -4.9603 3.5263 13 6 8.3221 -4.7929 1.8558 14 7 8.4504 -6.2522 1.8468 15 6 9.5048 -6.8322 1.2397 16 8 10.3476 -6.1460 0.7014 17 6 9.6366 -8.3334 1.2300 18 16 11.1451 -8.8009 0.3456 19 6 11.0501 -10.5548 0.4846 20 1 10.2203 -11.0113 1.0039 21 6 12.0411 -11.3500 -0.0742 22 7 13.0521 -10.7937 -0.7075 23 14 11.9407 -13.2094 0.0738 24 1 10.7162 -13.5807 0.8273 25 1 11.8885 -13.8118 -1.2826 26 1 13.1375 -13.7140 0.7936 27 6 5.7967 -4.3546 1.7064 28 7 2.1957 -1.0583 0.0056 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 4.3211 1.3492 0.0003 33 1 4.4451 -2.4975 -0.5860 34 1 5.5134 -1.0821 -0.4311 35 1 5.1209 -1.1846 1.9651 36 1 7.8225 -2.3314 2.7609 37 1 6.2428 -2.6010 3.6160 38 1 8.2706 -4.4263 0.8306 39 1 9.1865 -4.3553 2.3551 40 1 7.7767 -6.8011 2.2777 41 1 9.6883 -8.7004 2.2550 42 1 8.7720 -8.7708 0.7307 43 1 13.7444 -11.3494 -1.0984 44 1 4.8624 -4.4825 2.2532 45 1 5.8657 -4.9968 0.8284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691486179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:34 Heat of formation + Delta-G solvation = 93.800530 kcal Electronic energy + Delta-G solvation = -25072.724829 eV Core-core repulsion = 21254.928161 eV Total energy + Delta-G solvation = -3817.796667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.92510 -40.04092 -38.72650 -35.88056 -34.21078 -33.40840 -32.60337 -32.41278 -29.84132 -28.72403 -26.75977 -26.05805 -25.51525 -25.13152 -22.79343 -22.57282 -21.31492 -20.32435 -19.10652 -17.74890 -17.64022 -17.27835 -16.73777 -16.22538 -16.07021 -15.38462 -15.27200 -15.11371 -14.99609 -14.79087 -14.05911 -13.92968 -13.78644 -13.48284 -13.40272 -13.20293 -13.08450 -12.71118 -12.58967 -12.54603 -12.03814 -11.73358 -11.53380 -11.18508 -11.08175 -11.05775 -11.00316 -10.75102 -10.72262 -10.66034 -10.47315 -9.78923 -9.63482 -9.36528 -9.06361 -8.87724 -8.77039 -8.21198 -6.48158 -6.20470 -3.90656 1.41895 1.91549 1.98185 3.05953 3.13614 3.22636 3.29488 3.34387 3.62698 3.72901 3.90571 4.19565 4.21834 4.35614 4.45576 4.50409 4.51936 4.56424 4.58370 4.76561 4.79474 4.97513 5.06997 5.14851 5.21216 5.23566 5.29916 5.48126 5.51719 5.60920 5.65944 5.70136 5.75647 5.85204 5.85566 5.91829 5.97162 6.09045 6.17032 6.27496 6.66681 6.68208 6.95562 7.61395 7.75757 7.94122 8.36934 8.65230 9.25101 10.87064 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.001454 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.018199 B =19251.345161 C =19635.449262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.160 5.160 3 N -0.292 5.292 4 C -0.022 4.022 5 C 0.005 3.995 6 C 0.147 3.853 7 N -0.672 5.672 8 C 0.057 3.943 9 H 0.078 0.922 10 C -0.130 4.130 11 C -0.124 4.124 12 H 0.087 0.913 13 C 0.139 3.861 14 N -0.737 5.737 15 C 0.531 3.469 16 O -0.520 6.520 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.120 4.120 28 N -0.268 5.268 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.196 0.804 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.342 0.658 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.358 22.904 5.761 33.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.061 5.061 3 N -0.133 5.133 4 C -0.205 4.205 5 C -0.159 4.159 6 C 0.016 3.984 7 N -0.304 5.304 8 C -0.052 4.052 9 H 0.096 0.904 10 C -0.169 4.169 11 C -0.143 4.143 12 H 0.105 0.895 13 C 0.015 3.985 14 N -0.391 5.391 15 C 0.317 3.683 16 O -0.394 6.394 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.159 4.159 28 N -0.111 5.111 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.213 0.787 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.662 23.540 4.754 34.423 hybrid contribution 0.162 -1.519 0.716 1.688 sum -24.500 22.020 5.470 33.393 Atomic orbital electron populations 1.22131 0.70222 1.05890 1.04961 1.47974 1.08947 0.99405 1.49812 1.74045 1.03945 1.16206 1.19138 1.24678 0.94536 0.94768 1.06549 1.23048 0.92662 0.93661 1.06487 1.20143 0.90346 0.96693 0.91245 1.60590 1.38894 1.21687 1.09188 1.23143 0.90335 0.94125 0.97606 0.90379 1.23168 1.00559 0.95755 0.97409 1.22463 0.95028 0.97100 0.99742 0.89512 1.21073 0.96112 0.81106 1.00235 1.45973 1.26763 1.06987 1.59424 1.20304 0.80565 0.90129 0.77288 1.90698 1.40402 1.64868 1.43426 1.23531 1.07362 0.93658 1.05845 1.85390 1.22164 1.05727 1.70204 1.22918 1.12242 0.91220 1.41916 0.90873 1.24993 0.94513 0.99562 0.94522 1.70033 1.10559 1.35796 1.33930 0.86116 0.78199 0.83146 0.78031 1.19617 1.20583 1.20575 1.23136 0.97564 0.95466 0.99700 1.74066 1.03672 1.15286 1.18052 0.89254 0.87832 0.87973 0.78730 0.89121 0.92571 0.83903 0.90941 0.89035 0.91588 0.91481 0.76768 0.89238 0.89229 0.92258 0.89123 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.39 11.57 59.85 0.69 1.08 16 2 N -0.16 -1.36 4.35 -16.63 -0.07 -1.43 16 3 N -0.29 -2.67 12.05 30.67 0.37 -2.31 16 4 C -0.02 -0.17 12.16 -17.21 -0.21 -0.38 16 5 C 0.00 0.04 6.87 -82.25 -0.56 -0.52 16 6 C 0.15 1.05 6.13 -4.97 -0.03 1.02 16 7 N -0.67 -4.79 6.54 -107.13 -0.70 -5.49 16 8 C 0.06 0.41 3.77 -66.90 -0.25 0.16 16 9 H 0.08 0.59 7.46 -51.93 -0.39 0.20 16 10 C -0.13 -0.86 7.26 -25.91 -0.19 -1.05 16 11 C -0.12 -0.98 3.95 -89.71 -0.35 -1.34 16 12 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 13 C 0.14 1.55 5.35 -4.04 -0.02 1.53 16 14 N -0.74 -9.71 5.56 -60.29 -0.33 -10.04 16 15 C 0.53 9.92 7.85 -10.98 -0.09 9.83 16 16 O -0.52 -11.84 15.86 5.56 0.09 -11.75 16 17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.12 -0.97 7.42 -25.83 -0.19 -1.16 16 28 N -0.27 -2.68 12.05 33.71 0.41 -2.28 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 35 H 0.34 2.11 8.56 -39.29 -0.34 1.78 16 36 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.80 7.39 -51.93 -0.38 0.41 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -37.59 396.34 -8.47 -46.06 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.91 Total: 0.95 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.79 Total: -6.72 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.40 Total: -47.06 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.59 -8.47 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691486179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.857 kcal (2) G-P(sol) polarization free energy of solvation -37.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds