Wall clock time and date at job start Tue Mar 31 2020 22:43:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 N 1.28605 * 124.61529 * 2 1
4 4 C 1.31375 * 108.71435 * 179.97438 * 3 2 1
5 5 C 1.39678 * 105.90300 * 359.97438 * 4 3 2
6 6 C 1.50701 * 127.04800 * 180.02562 * 5 4 3
7 7 N 1.46901 * 109.47037 * 95.00391 * 6 5 4
8 8 C 1.46901 * 111.00015 * 179.97438 * 7 6 5
9 9 H 1.09003 * 112.84772 * 25.32848 * 8 7 6
10 10 C 1.53783 * 113.61337 * 156.52321 * 8 7 6
11 11 C 1.53791 * 87.07608 * 139.98223 * 10 8 7
12 12 H 1.08996 * 113.60804 * 219.93147 * 11 10 8
13 13 C 1.52998 * 113.61433 * 89.11706 * 11 10 8
14 14 N 1.46500 * 109.46726 * 174.99587 * 13 11 10
15 15 C 1.34781 * 119.99507 * 179.97438 * 14 13 11
16 16 O 1.21282 * 120.00555 * 0.02562 * 15 14 13
17 17 C 1.50704 * 119.99685 * 180.02562 * 15 14 13
18 18 S 1.81002 * 109.47095 * 180.02562 * 17 15 14
19 19 C 1.76197 * 99.99908 * 179.97438 * 18 17 15
20 20 H 1.08007 * 120.00277 * 0.02562 * 19 18 17
21 21 C 1.38801 * 120.00127 * 179.97438 * 19 18 17
22 22 N 1.31636 * 119.99549 * 0.02562 * 21 19 18
23 23 Si 1.86796 * 120.00223 * 179.97438 * 21 19 18
24 24 H 1.48499 * 109.47199 * 0.02562 * 23 21 19
25 25 H 1.48501 * 109.46964 * 120.00356 * 23 21 19
26 26 H 1.48495 * 109.47371 * 240.00098 * 23 21 19
27 27 C 1.53778 * 113.61432 * 254.13191 * 8 7 6
28 28 N 1.28599 * 124.62056 * 179.69415 * 2 1 3
29 29 H 1.09001 * 109.47060 * 90.03269 * 1 2 3
30 30 H 1.09004 * 109.47073 * 210.02758 * 1 2 3
31 31 H 1.09000 * 109.47212 * 330.02841 * 1 2 3
32 32 H 1.08001 * 127.05004 * 179.97438 * 4 3 2
33 33 H 1.09003 * 109.46800 * 214.99425 * 6 5 4
34 34 H 1.08995 * 109.47257 * 335.00040 * 6 5 4
35 35 H 1.00908 * 110.99425 * 303.94303 * 7 6 5
36 36 H 1.09000 * 113.61250 * 254.52083 * 10 8 7
37 37 H 1.08996 * 113.61590 * 25.35018 * 10 8 7
38 38 H 1.08997 * 109.47174 * 294.99941 * 13 11 10
39 39 H 1.08997 * 109.47494 * 54.99934 * 13 11 10
40 40 H 0.96997 * 120.00239 * 359.97438 * 14 13 11
41 41 H 1.08997 * 109.47434 * 300.00324 * 17 15 14
42 42 H 1.09001 * 109.47302 * 60.00043 * 17 15 14
43 43 H 0.96998 * 119.99668 * 180.02562 * 22 21 19
44 44 H 1.09004 * 113.61511 * 334.56560 * 27 8 7
45 45 H 1.09002 * 113.61703 * 105.46713 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 7 2.1956 1.0584 0.0000
4 6 3.4591 0.6985 0.0006
5 6 3.4591 -0.6983 0.0015
6 6 4.6620 -1.6062 0.0030
7 7 4.9791 -1.9967 1.3832
8 6 6.1487 -2.8846 1.4236
9 1 6.8113 -2.7509 0.5685
10 6 6.8800 -2.8788 2.7764
11 6 7.0471 -4.3978 2.6034
12 1 6.9059 -4.9603 3.5263
13 6 8.3221 -4.7929 1.8558
14 7 8.4504 -6.2522 1.8468
15 6 9.5048 -6.8322 1.2397
16 8 10.3476 -6.1460 0.7014
17 6 9.6366 -8.3334 1.2300
18 16 11.1451 -8.8009 0.3456
19 6 11.0501 -10.5548 0.4846
20 1 10.2203 -11.0113 1.0039
21 6 12.0411 -11.3500 -0.0742
22 7 13.0521 -10.7937 -0.7075
23 14 11.9407 -13.2094 0.0738
24 1 10.7162 -13.5807 0.8273
25 1 11.8885 -13.8118 -1.2826
26 1 13.1375 -13.7140 0.7936
27 6 5.7967 -4.3546 1.7064
28 7 2.1957 -1.0583 0.0056
29 1 -0.3633 -0.0006 -1.0277
30 1 -0.3633 -0.8898 0.5143
31 1 -0.3634 0.8902 0.5134
32 1 4.3211 1.3492 0.0003
33 1 4.4451 -2.4975 -0.5860
34 1 5.5134 -1.0821 -0.4311
35 1 5.1209 -1.1846 1.9651
36 1 7.8225 -2.3314 2.7609
37 1 6.2428 -2.6010 3.6160
38 1 8.2706 -4.4263 0.8306
39 1 9.1865 -4.3553 2.3551
40 1 7.7767 -6.8011 2.2777
41 1 9.6883 -8.7004 2.2550
42 1 8.7720 -8.7708 0.7307
43 1 13.7444 -11.3494 -1.0984
44 1 4.8624 -4.4825 2.2532
45 1 5.8657 -4.9968 0.8284
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691486179.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:43:34
Heat of formation + Delta-G solvation = 93.800530 kcal
Electronic energy + Delta-G solvation = -25072.724829 eV
Core-core repulsion = 21254.928161 eV
Total energy + Delta-G solvation = -3817.796667 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-43.92510 -40.04092 -38.72650 -35.88056 -34.21078 -33.40840 -32.60337 -32.41278
-29.84132 -28.72403 -26.75977 -26.05805 -25.51525 -25.13152 -22.79343 -22.57282
-21.31492 -20.32435 -19.10652 -17.74890 -17.64022 -17.27835 -16.73777 -16.22538
-16.07021 -15.38462 -15.27200 -15.11371 -14.99609 -14.79087 -14.05911 -13.92968
-13.78644 -13.48284 -13.40272 -13.20293 -13.08450 -12.71118 -12.58967 -12.54603
-12.03814 -11.73358 -11.53380 -11.18508 -11.08175 -11.05775 -11.00316 -10.75102
-10.72262 -10.66034 -10.47315 -9.78923 -9.63482 -9.36528 -9.06361 -8.87724
-8.77039 -8.21198 -6.48158 -6.20470 -3.90656 1.41895 1.91549 1.98185
3.05953 3.13614 3.22636 3.29488 3.34387 3.62698 3.72901 3.90571
4.19565 4.21834 4.35614 4.45576 4.50409 4.51936 4.56424 4.58370
4.76561 4.79474 4.97513 5.06997 5.14851 5.21216 5.23566 5.29916
5.48126 5.51719 5.60920 5.65944 5.70136 5.75647 5.85204 5.85566
5.91829 5.97162 6.09045 6.17032 6.27496 6.66681 6.68208 6.95562
7.61395 7.75757 7.94122 8.36934 8.65230 9.25101 10.87064
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.025425 B = 0.001454 C = 0.001426
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1101.018199 B =19251.345161 C =19635.449262
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.108 3.892
2 N -0.160 5.160
3 N -0.292 5.292
4 C -0.022 4.022
5 C 0.005 3.995
6 C 0.147 3.853
7 N -0.672 5.672
8 C 0.057 3.943
9 H 0.078 0.922
10 C -0.130 4.130
11 C -0.124 4.124
12 H 0.087 0.913
13 C 0.139 3.861
14 N -0.737 5.737
15 C 0.531 3.469
16 O -0.520 6.520
17 C -0.153 4.153
18 S -0.061 6.061
19 C -0.535 4.535
20 H 0.073 0.927
21 C 0.073 3.927
22 N -0.868 5.868
23 Si 0.919 3.081
24 H -0.272 1.272
25 H -0.280 1.280
26 H -0.280 1.280
27 C -0.120 4.120
28 N -0.268 5.268
29 H 0.089 0.911
30 H 0.103 0.897
31 H 0.102 0.898
32 H 0.196 0.804
33 H 0.090 0.910
34 H 0.056 0.944
35 H 0.342 0.658
36 H 0.072 0.928
37 H 0.091 0.909
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.399 0.601
41 H 0.089 0.911
42 H 0.089 0.911
43 H 0.268 0.732
44 H 0.090 0.910
45 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.358 22.904 5.761 33.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.032 4.032
2 N -0.061 5.061
3 N -0.133 5.133
4 C -0.205 4.205
5 C -0.159 4.159
6 C 0.016 3.984
7 N -0.304 5.304
8 C -0.052 4.052
9 H 0.096 0.904
10 C -0.169 4.169
11 C -0.143 4.143
12 H 0.105 0.895
13 C 0.015 3.985
14 N -0.391 5.391
15 C 0.317 3.683
16 O -0.394 6.394
17 C -0.304 4.304
18 S 0.165 5.835
19 C -0.683 4.683
20 H 0.091 0.909
21 C -0.136 4.136
22 N -0.503 5.503
23 Si 0.745 3.255
24 H -0.196 1.196
25 H -0.206 1.206
26 H -0.206 1.206
27 C -0.159 4.159
28 N -0.111 5.111
29 H 0.107 0.893
30 H 0.122 0.878
31 H 0.120 0.880
32 H 0.213 0.787
33 H 0.109 0.891
34 H 0.074 0.926
35 H 0.161 0.839
36 H 0.091 0.909
37 H 0.110 0.890
38 H 0.084 0.916
39 H 0.085 0.915
40 H 0.232 0.768
41 H 0.108 0.892
42 H 0.108 0.892
43 H 0.077 0.923
44 H 0.109 0.891
45 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -24.662 23.540 4.754 34.423
hybrid contribution 0.162 -1.519 0.716 1.688
sum -24.500 22.020 5.470 33.393
Atomic orbital electron populations
1.22131 0.70222 1.05890 1.04961 1.47974 1.08947 0.99405 1.49812
1.74045 1.03945 1.16206 1.19138 1.24678 0.94536 0.94768 1.06549
1.23048 0.92662 0.93661 1.06487 1.20143 0.90346 0.96693 0.91245
1.60590 1.38894 1.21687 1.09188 1.23143 0.90335 0.94125 0.97606
0.90379 1.23168 1.00559 0.95755 0.97409 1.22463 0.95028 0.97100
0.99742 0.89512 1.21073 0.96112 0.81106 1.00235 1.45973 1.26763
1.06987 1.59424 1.20304 0.80565 0.90129 0.77288 1.90698 1.40402
1.64868 1.43426 1.23531 1.07362 0.93658 1.05845 1.85390 1.22164
1.05727 1.70204 1.22918 1.12242 0.91220 1.41916 0.90873 1.24993
0.94513 0.99562 0.94522 1.70033 1.10559 1.35796 1.33930 0.86116
0.78199 0.83146 0.78031 1.19617 1.20583 1.20575 1.23136 0.97564
0.95466 0.99700 1.74066 1.03672 1.15286 1.18052 0.89254 0.87832
0.87973 0.78730 0.89121 0.92571 0.83903 0.90941 0.89035 0.91588
0.91481 0.76768 0.89238 0.89229 0.92258 0.89123 0.91256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 0.39 11.57 59.85 0.69 1.08 16
2 N -0.16 -1.36 4.35 -16.63 -0.07 -1.43 16
3 N -0.29 -2.67 12.05 30.67 0.37 -2.31 16
4 C -0.02 -0.17 12.16 -17.21 -0.21 -0.38 16
5 C 0.00 0.04 6.87 -82.25 -0.56 -0.52 16
6 C 0.15 1.05 6.13 -4.97 -0.03 1.02 16
7 N -0.67 -4.79 6.54 -107.13 -0.70 -5.49 16
8 C 0.06 0.41 3.77 -66.90 -0.25 0.16 16
9 H 0.08 0.59 7.46 -51.93 -0.39 0.20 16
10 C -0.13 -0.86 7.26 -25.91 -0.19 -1.05 16
11 C -0.12 -0.98 3.95 -89.71 -0.35 -1.34 16
12 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
13 C 0.14 1.55 5.35 -4.04 -0.02 1.53 16
14 N -0.74 -9.71 5.56 -60.29 -0.33 -10.04 16
15 C 0.53 9.92 7.85 -10.98 -0.09 9.83 16
16 O -0.52 -11.84 15.86 5.56 0.09 -11.75 16
17 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16
18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16
19 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16
20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16
21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16
23 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16
24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
27 C -0.12 -0.97 7.42 -25.83 -0.19 -1.16 16
28 N -0.27 -2.68 12.05 33.71 0.41 -2.28 16
29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16
30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16
32 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16
33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16
35 H 0.34 2.11 8.56 -39.29 -0.34 1.78 16
36 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16
37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.07 0.80 7.39 -51.93 -0.38 0.41 16
39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
40 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16
41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
45 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16
LS Contribution 396.34 15.07 5.97 5.97
Total: -1.00 -37.59 396.34 -8.47 -46.06
By element:
Atomic # 1 Polarization: 7.86 SS G_CDS: -6.91 Total: 0.95 kcal
Atomic # 6 Polarization: -5.93 SS G_CDS: -0.79 Total: -6.72 kcal
Atomic # 7 Polarization: -47.46 SS G_CDS: 0.40 Total: -47.06 kcal
Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -37.59 -8.47 -46.06 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691486179.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.857 kcal
(2) G-P(sol) polarization free energy of solvation -37.586 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.271 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds