Wall clock time and date at job start Tue Mar 31 2020 22:45:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46496 * 119.99598 * 2 1
4 4 C 1.53000 * 109.47505 * 269.99590 * 3 2 1
5 5 H 1.09007 * 112.74360 * 284.23766 * 4 3 2
6 6 C 1.53513 * 113.48143 * 153.38304 * 4 3 2
7 7 C 1.53510 * 83.57561 * 219.21337 * 6 4 3
8 8 N 1.47481 * 113.47279 * 54.99747 * 4 3 2
9 9 C 1.46894 * 111.00676 * 253.47332 * 8 4 3
10 10 C 1.50700 * 109.47642 * 170.00176 * 9 8 4
11 11 O 1.21289 * 119.99518 * 0.02562 * 10 9 8
12 12 N 1.34773 * 120.00155 * 180.02562 * 10 9 8
13 13 C 1.37098 * 119.99857 * 179.97438 * 12 10 9
14 14 H 1.07996 * 120.00348 * 0.02562 * 13 12 10
15 15 C 1.38947 * 119.99790 * 180.02562 * 13 12 10
16 16 N 1.31415 * 119.99999 * 180.02562 * 15 13 12
17 17 Si 1.86805 * 120.00283 * 359.72274 * 15 13 12
18 18 H 1.48494 * 109.47083 * 270.28055 * 17 15 13
19 19 H 1.48497 * 109.46822 * 30.27858 * 17 15 13
20 20 H 1.48496 * 109.47160 * 150.27669 * 17 15 13
21 21 C 1.34770 * 120.00153 * 179.97438 * 2 1 3
22 22 O 1.21577 * 120.00040 * 175.94834 * 21 2 1
23 23 C 1.47617 * 120.00019 * 355.94313 * 21 2 1
24 24 N 1.31872 * 126.45923 * 5.93700 * 23 21 2
25 25 N 1.28466 * 110.15513 * 179.97438 * 24 23 21
26 26 H 0.97002 * 124.93713 * 179.97438 * 25 24 23
27 27 C 1.35728 * 110.13359 * 359.97438 * 25 24 23
28 28 C 1.35543 * 107.11924 * 359.73025 * 27 25 24
29 29 F 1.35098 * 127.24911 * 180.29148 * 28 27 25
30 30 H 1.09008 * 109.46839 * 95.72301 * 1 2 3
31 31 H 1.08997 * 109.47336 * 215.72039 * 1 2 3
32 32 H 1.09000 * 109.47171 * 335.72702 * 1 2 3
33 33 H 1.09000 * 109.47010 * 149.99700 * 3 2 1
34 34 H 1.08996 * 109.47532 * 30.00113 * 3 2 1
35 35 H 1.09000 * 114.16775 * 332.85374 * 6 4 3
36 36 H 1.08994 * 114.17102 * 105.37480 * 6 4 3
37 37 H 1.09002 * 113.47350 * 271.25488 * 7 6 4
38 38 H 1.08997 * 113.48214 * 140.78770 * 7 6 4
39 39 H 1.09004 * 109.46824 * 49.99667 * 9 8 4
40 40 H 1.08999 * 109.47201 * 290.00568 * 9 8 4
41 41 H 0.97002 * 120.00132 * 359.97438 * 12 10 9
42 42 H 0.97002 * 120.00208 * 179.72229 * 16 15 13
43 43 H 1.07998 * 126.44362 * 179.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2687 0.0000
4 6 2.4525 1.7105 -1.4425
5 1 3.2502 1.1431 -1.9221
6 6 2.6015 3.2303 -1.5995
7 6 1.7995 3.0022 -2.8884
8 7 1.2251 1.8005 -2.2551
9 6 1.1443 0.6887 -3.2118
10 6 -0.2219 0.6713 -3.8476
11 8 -1.0469 1.5035 -3.5349
12 7 -0.5269 -0.2690 -4.7637
13 6 -1.7700 -0.2851 -5.3417
14 1 -2.5047 0.4559 -5.0633
15 6 -2.0846 -1.2548 -6.2858
16 7 -3.2760 -1.2700 -6.8403
17 14 -0.8113 -2.5318 -6.7732
18 1 -0.0129 -2.0232 -7.9173
19 1 0.0878 -2.7987 -5.6219
20 1 -1.4967 -3.7887 -7.1677
21 6 2.1389 -1.1671 0.0005
22 8 3.3524 -1.1685 -0.0739
23 6 1.4037 -2.4439 0.0915
24 7 0.0941 -2.5975 0.0675
25 7 -0.2074 -3.8423 0.1676
26 1 -1.1105 -4.1964 0.1730
27 6 0.9211 -4.5901 0.2646
28 6 1.9718 -3.7353 0.2135
29 9 3.2846 -4.0489 0.2701
30 1 -0.3633 -0.1025 -1.0226
31 1 -0.3634 -0.8343 0.6000
32 1 -0.3633 0.9368 0.4225
33 1 3.1498 1.1385 0.5139
34 1 1.6084 2.0284 0.5138
35 1 2.0741 3.8109 -0.8427
36 1 3.6264 3.5639 -1.7612
37 1 2.4233 2.7805 -3.7544
38 1 1.0643 3.7822 -3.0863
39 1 1.3142 -0.2530 -2.6897
40 1 1.9027 0.8179 -3.9839
41 1 0.1330 -0.9343 -5.0141
42 1 -3.4943 -1.9445 -7.5023
43 1 0.9725 -5.6646 0.3602
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691661836.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:49
Heat of formation + Delta-G solvation = 30.816469 kcal
Electronic energy + Delta-G solvation = -30616.196777 eV
Core-core repulsion = 26229.455740 eV
Total energy + Delta-G solvation = -4386.741037 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.149 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-48.77118 -42.90080 -40.50614 -39.12160 -37.87710 -35.38764 -33.92281 -32.23953
-31.68395 -30.92619 -30.70767 -28.81162 -26.50104 -25.88452 -24.54145 -23.51448
-22.77365 -21.94043 -19.96427 -19.46302 -19.32179 -18.63022 -18.32536 -17.07437
-16.65135 -16.22631 -16.06900 -15.92384 -15.86046 -15.46398 -15.19636 -14.81057
-14.72238 -14.48157 -14.01107 -13.77536 -13.53610 -13.19261 -13.08378 -12.73666
-12.60397 -12.52875 -12.21221 -12.13683 -11.56486 -11.51622 -11.35217 -11.14999
-10.87159 -10.81882 -10.60077 -10.55088 -10.09360 -9.96924 -9.80281 -9.54360
-9.20584 -8.94166 -8.44118 -8.25014 -8.15507 -6.30337 -3.80902 1.25799
1.59099 2.40362 2.92201 3.02204 3.06539 3.13816 3.20317 3.78205
3.89969 4.02665 4.10637 4.32968 4.49494 4.56815 4.69990 4.80631
4.88481 5.01304 5.17851 5.19411 5.32744 5.42683 5.44611 5.52981
5.61959 5.69635 5.74813 5.80583 5.88493 5.94704 6.01434 6.10711
6.22309 6.33886 6.47172 6.55279 6.64060 7.17296 7.31828 7.44741
7.60072 8.11285 8.16133 8.62584 8.97230 9.44780 9.87631 10.82997
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.008311 B = 0.005011 C = 0.003558
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3368.092245 B = 5586.094465 C = 7868.708424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.588 5.588
3 C 0.138 3.862
4 C 0.003 3.997
5 H 0.080 0.920
6 C -0.135 4.135
7 C 0.003 3.997
8 N -0.428 5.428
9 C 0.009 3.991
10 C 0.460 3.540
11 O -0.554 6.554
12 N -0.596 5.596
13 C -0.300 4.300
14 H 0.119 0.881
15 C 0.041 3.959
16 N -0.884 5.884
17 Si 0.875 3.125
18 H -0.271 1.271
19 H -0.271 1.271
20 H -0.277 1.277
21 C 0.595 3.405
22 O -0.532 6.532
23 C -0.030 4.030
24 N -0.218 5.218
25 N -0.370 5.370
26 H 0.457 0.543
27 C -0.037 4.037
28 C 0.034 3.966
29 F -0.102 7.102
30 H 0.070 0.930
31 H 0.086 0.914
32 H 0.070 0.930
33 H 0.085 0.915
34 H 0.087 0.913
35 H 0.094 0.906
36 H 0.075 0.925
37 H 0.065 0.935
38 H 0.089 0.911
39 H 0.082 0.918
40 H 0.056 0.944
41 H 0.368 0.632
42 H 0.272 0.728
43 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.868 -3.661 16.077 19.748
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.319 5.319
3 C 0.015 3.985
4 C -0.108 4.108
5 H 0.098 0.902
6 C -0.174 4.174
7 C -0.126 4.126
8 N -0.150 5.150
9 C -0.124 4.124
10 C 0.245 3.755
11 O -0.435 6.435
12 N -0.236 5.236
13 C -0.428 4.428
14 H 0.137 0.863
15 C -0.161 4.161
16 N -0.524 5.524
17 Si 0.702 3.298
18 H -0.196 1.196
19 H -0.197 1.197
20 H -0.202 1.202
21 C 0.381 3.619
22 O -0.408 6.408
23 C -0.191 4.191
24 N -0.055 5.055
25 N -0.086 5.086
26 H 0.304 0.696
27 C -0.182 4.182
28 C 0.004 3.996
29 F -0.080 7.080
30 H 0.089 0.911
31 H 0.104 0.896
32 H 0.089 0.911
33 H 0.104 0.896
34 H 0.105 0.895
35 H 0.113 0.887
36 H 0.093 0.907
37 H 0.083 0.917
38 H 0.108 0.892
39 H 0.100 0.900
40 H 0.074 0.926
41 H 0.201 0.799
42 H 0.083 0.917
43 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges 9.191 -2.585 16.321 18.908
hybrid contribution 2.002 -2.236 -1.169 3.221
sum 11.193 -4.821 15.151 19.445
Atomic orbital electron populations
1.22207 0.77263 1.02891 1.03966 1.47564 1.08279 1.04868 1.71198
1.21532 0.97400 0.84172 0.95395 1.23912 0.93743 0.96783 0.96330
0.90215 1.23159 1.00530 0.94889 0.98783 1.23759 0.97391 0.95663
0.95786 1.68759 1.29798 1.02294 1.14172 1.22513 0.97321 0.96685
0.95861 1.19551 0.88872 0.84212 0.82836 1.90555 1.49995 1.39484
1.63474 1.42244 1.14575 1.28381 1.38436 1.19408 0.89490 1.14883
1.19067 0.86290 1.24997 0.96380 0.97793 0.96935 1.69621 1.19449
1.35375 1.27985 0.86734 0.81611 0.82118 0.79318 1.19627 1.19673
1.20207 1.16827 0.86062 0.81721 0.77274 1.90816 1.12626 1.86519
1.50822 1.22168 0.89907 0.94924 1.12104 1.73992 1.14789 0.99837
1.16903 1.43263 1.09711 1.03676 1.51942 0.69613 1.22681 0.85642
0.99442 1.10422 1.17145 0.79797 0.91699 1.10924 1.91528 1.29453
1.92686 1.94359 0.91109 0.89564 0.91100 0.89634 0.89513 0.88735
0.90670 0.91706 0.89244 0.89983 0.92563 0.79944 0.91723 0.78583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.10 9.22 59.85 0.55 1.65 16
2 N -0.59 -8.18 2.59 -182.78 -0.47 -8.65 16
3 C 0.14 1.67 5.57 -4.04 -0.02 1.65 16
4 C 0.00 0.04 3.35 -71.43 -0.24 -0.20 16
5 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16
6 C -0.14 -1.44 8.00 -26.20 -0.21 -1.65 16
7 C 0.00 0.04 7.71 -7.54 -0.06 -0.02 16
8 N -0.43 -6.86 5.01 -237.93 -1.19 -8.05 16
9 C 0.01 0.15 4.75 -4.98 -0.02 0.13 16
10 C 0.46 10.70 7.85 -10.99 -0.09 10.61 16
11 O -0.55 -14.92 16.01 5.55 0.09 -14.83 16
12 N -0.60 -14.58 5.09 -10.97 -0.06 -14.63 16
13 C -0.30 -8.52 10.16 -14.93 -0.15 -8.68 16
14 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16
15 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16
16 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16
17 Si 0.88 19.78 27.74 -169.99 -4.71 15.06 16
18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
19 H -0.27 -5.72 6.52 56.52 0.37 -5.35 16
20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
21 C 0.60 9.30 7.67 -12.44 -0.10 9.20 16
22 O -0.53 -9.51 16.30 5.30 0.09 -9.42 16
23 C -0.03 -0.42 6.83 -82.74 -0.57 -0.99 16
24 N -0.22 -2.70 8.72 33.43 0.29 -2.41 16
25 N -0.37 -3.17 6.86 30.63 0.21 -2.96 16
26 H 0.46 2.16 8.96 -190.44 -1.71 0.45 16
27 C -0.04 -0.31 12.06 -16.79 -0.20 -0.51 16
28 C 0.03 0.44 8.03 -39.26 -0.32 0.12 16
29 F -0.10 -1.45 17.05 2.25 0.04 -1.41 16
30 H 0.07 1.22 7.50 -51.92 -0.39 0.83 16
31 H 0.09 1.10 5.28 -51.93 -0.27 0.83 16
32 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16
33 H 0.09 1.00 7.48 -51.93 -0.39 0.61 16
34 H 0.09 0.91 7.59 -51.93 -0.39 0.52 16
35 H 0.09 0.92 7.94 -51.93 -0.41 0.51 16
36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.06 0.86 7.42 -51.93 -0.39 0.47 16
38 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16
39 H 0.08 1.48 7.80 -51.93 -0.41 1.07 16
40 H 0.06 0.93 7.30 -51.93 -0.38 0.55 16
41 H 0.37 8.16 5.76 -40.82 -0.24 7.92 16
42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
43 H 0.20 0.82 8.06 -52.49 -0.42 0.40 16
LS Contribution 365.55 15.07 5.51 5.51
Total: -1.00 -36.72 365.55 -7.56 -44.28
By element:
Atomic # 1 Polarization: 16.84 SS G_CDS: -6.61 Total: 10.23 kcal
Atomic # 6 Polarization: 13.88 SS G_CDS: -1.51 Total: 12.37 kcal
Atomic # 7 Polarization: -61.34 SS G_CDS: -0.44 Total: -61.79 kcal
Atomic # 8 Polarization: -24.43 SS G_CDS: 0.18 Total: -24.25 kcal
Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal
Atomic # 14 Polarization: 19.78 SS G_CDS: -4.71 Total: 15.06 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -36.72 -7.56 -44.28 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691661836.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.101 kcal
(2) G-P(sol) polarization free energy of solvation -36.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.378 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.816 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds