Wall clock time and date at job start Tue Mar 31 2020 22:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35314 * 125.86935 * 2 1 4 4 C 1.35351 * 106.17615 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.75184 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47392 * 95.00152 * 5 4 3 7 7 C 1.46898 * 110.99957 * 180.02562 * 6 5 4 8 8 H 1.08993 * 112.85167 * 23.79929 * 7 6 5 9 9 C 1.53777 * 113.61321 * 154.99910 * 7 6 5 10 10 C 1.53782 * 87.08471 * 89.19846 * 9 7 6 11 11 H 1.09001 * 113.61319 * 270.80387 * 10 9 7 12 12 C 1.52997 * 113.61871 * 139.98088 * 10 9 7 13 13 N 1.46505 * 109.47212 * 176.53036 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00024 * 22 20 18 24 24 H 1.48506 * 109.46989 * 210.00023 * 22 20 18 25 25 H 1.48506 * 109.47313 * 329.99924 * 22 20 18 26 26 C 1.53785 * 87.16968 * 25.38967 * 10 9 7 27 27 N 1.33776 * 106.49524 * 0.25765 * 4 3 2 28 28 N 1.28637 * 108.88486 * 359.56996 * 27 4 3 29 29 H 1.09005 * 109.46774 * 90.00234 * 1 2 3 30 30 H 1.09004 * 109.47028 * 209.99801 * 1 2 3 31 31 H 1.09003 * 109.47168 * 330.00332 * 1 2 3 32 32 H 1.07999 * 126.91159 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47286 * 335.00030 * 5 4 3 34 34 H 1.09004 * 109.47154 * 214.99796 * 5 4 3 35 35 H 1.00904 * 110.99582 * 303.95091 * 6 5 4 36 36 H 1.09011 * 113.61618 * 334.65198 * 9 7 6 37 37 H 1.09000 * 113.69499 * 203.75596 * 9 7 6 38 38 H 1.09002 * 109.47153 * 56.53028 * 12 10 9 39 39 H 1.09001 * 109.46832 * 296.53219 * 12 10 9 40 40 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 41 41 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 42 42 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 43 43 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61195 * 89.16170 * 26 10 9 45 45 H 1.09001 * 113.61520 * 220.06304 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 -0.0006 5 6 4.7880 1.4733 -0.0003 6 7 5.2632 1.6425 1.3795 7 6 6.4885 2.4518 1.4188 8 1 6.5941 3.1024 0.5507 9 6 6.7078 3.1728 2.7593 10 6 7.4623 1.9153 3.2224 11 1 6.8202 1.1676 3.6881 12 6 8.7139 2.2207 4.0477 13 7 9.3128 0.9658 4.5091 14 6 10.4326 0.9892 5.2586 15 8 10.9443 2.0490 5.5516 16 6 11.0483 -0.3017 5.7337 17 16 12.5291 0.0595 6.7099 18 6 13.0299 -1.5784 7.1237 19 1 12.4530 -2.4232 6.7773 20 6 14.1652 -1.7828 7.8956 21 7 14.8674 -0.7531 8.3190 22 14 14.6957 -3.5192 8.3348 23 1 15.6160 -4.0349 7.2897 24 1 15.3928 -3.5070 9.6460 25 1 13.5000 -4.3960 8.4179 26 6 7.7554 1.6375 1.7385 27 7 3.4576 -0.6953 -0.0067 28 7 2.2191 -1.0431 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9382 2.1281 -0.0004 33 1 4.5759 2.4506 -0.4339 34 1 5.5560 0.9730 -0.5902 35 1 4.5450 2.0458 1.9623 36 1 5.7863 3.3573 3.3117 37 1 7.3397 4.0576 2.6825 38 1 8.4415 2.8313 4.9085 39 1 9.4324 2.7612 3.4315 40 1 8.9037 0.1182 4.2744 41 1 10.3298 -0.8417 6.3504 42 1 11.3202 -0.9129 4.8731 43 1 15.6610 -0.8960 8.8581 44 1 8.6745 2.1015 1.3808 45 1 7.6785 0.5844 1.4680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691767910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:03 Heat of formation + Delta-G solvation = 85.455178 kcal Electronic energy + Delta-G solvation = -25086.766622 eV Core-core repulsion = 21268.608073 eV Total energy + Delta-G solvation = -3818.158549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.68676 -39.93123 -38.71340 -35.91596 -34.77643 -33.73171 -32.37478 -31.37069 -29.70857 -28.56476 -27.19788 -26.09463 -25.52968 -25.26957 -22.52182 -22.31057 -21.62593 -20.32326 -19.25822 -17.81552 -17.75713 -17.09817 -16.40421 -16.13999 -16.07576 -15.40066 -15.20336 -15.08508 -15.00837 -14.75279 -14.43292 -13.98262 -13.82090 -13.73271 -13.44987 -13.12374 -12.85361 -12.62977 -12.55554 -12.40373 -12.09232 -11.99326 -11.52079 -11.22402 -11.01929 -10.99795 -10.96589 -10.82070 -10.66595 -10.54539 -10.39119 -9.75587 -9.73946 -9.28306 -9.01624 -8.81604 -8.72709 -8.16970 -6.43686 -6.16396 -3.86351 1.09434 1.85495 2.05930 3.12909 3.21199 3.26774 3.32489 3.38246 3.65449 3.80593 3.86920 4.01556 4.21603 4.25989 4.32804 4.35777 4.44980 4.53283 4.62997 4.64797 4.72825 4.87799 5.10128 5.18697 5.19500 5.23050 5.33349 5.42081 5.46284 5.50082 5.64654 5.67651 5.68157 5.86250 5.94874 5.97757 6.04276 6.05028 6.20522 6.23527 6.64572 6.77067 6.92823 7.65178 7.84956 8.09096 8.40875 8.73284 9.29006 10.91074 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.001565 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.818273 B =17889.334539 C =19099.293509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.295 5.295 3 C -0.048 4.048 4 C -0.015 4.015 5 C 0.148 3.852 6 N -0.663 5.663 7 C 0.060 3.940 8 H 0.062 0.938 9 C -0.133 4.133 10 C -0.112 4.112 11 H 0.100 0.900 12 C 0.130 3.870 13 N -0.736 5.736 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.153 4.153 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.126 4.126 27 N -0.247 5.247 28 N -0.086 5.086 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.189 0.811 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.342 0.658 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.084 0.916 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.070 8.122 -20.183 38.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.088 5.088 3 C -0.200 4.200 4 C -0.154 4.154 5 C 0.017 3.983 6 N -0.296 5.296 7 C -0.050 4.050 8 H 0.080 0.920 9 C -0.172 4.172 10 C -0.131 4.131 11 H 0.118 0.882 12 C 0.006 3.994 13 N -0.390 5.390 14 C 0.316 3.684 15 O -0.396 6.396 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.164 4.164 27 N -0.114 5.114 28 N -0.066 5.066 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.206 0.794 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.162 0.838 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.733 7.819 -19.585 37.272 hybrid contribution -1.174 -0.689 -0.326 1.400 sum -31.908 7.130 -19.910 38.280 Atomic orbital electron populations 1.22289 0.72674 1.06068 1.05043 1.47275 1.09465 1.04931 1.47173 1.23408 0.91041 0.94749 1.10799 1.21853 0.94666 0.91684 1.07230 1.20116 0.91548 0.95769 0.90866 1.60236 1.06659 1.53393 1.09275 1.22590 0.91082 0.94042 0.97245 0.91987 1.23194 1.00753 0.97406 0.95839 1.22695 0.96352 0.98535 0.95526 0.88214 1.21306 0.93492 0.86786 0.97840 1.45985 1.28497 1.09282 1.55278 1.20294 0.79623 0.91188 0.77244 1.90690 1.61188 1.32218 1.55524 1.23533 1.04819 0.97528 1.04522 1.85366 1.23197 1.11515 1.63442 1.22886 1.14414 0.92373 1.38622 0.90922 1.24984 0.95396 0.98146 0.95047 1.70023 1.16432 1.29899 1.34022 0.86174 0.78732 0.82706 0.77919 1.20281 1.20783 1.19698 1.23139 0.96408 1.01535 0.95335 1.75129 1.09062 1.11986 1.15207 1.78396 0.96519 1.12040 1.19657 0.89024 0.87890 0.88270 0.79420 0.93262 0.88901 0.83840 0.91140 0.89076 0.91875 0.91733 0.76747 0.89275 0.89238 0.92241 0.89746 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.08 11.39 59.85 0.68 0.76 16 2 N -0.30 -1.82 3.74 -68.05 -0.25 -2.07 16 3 C -0.05 -0.25 11.55 -17.05 -0.20 -0.45 16 4 C -0.02 -0.12 6.76 -82.78 -0.56 -0.68 16 5 C 0.15 0.94 6.09 -4.98 -0.03 0.91 16 6 N -0.66 -4.53 6.44 -107.04 -0.69 -5.22 16 7 C 0.06 0.40 4.23 -66.81 -0.28 0.11 16 8 H 0.06 0.36 7.86 -51.93 -0.41 -0.05 16 9 C -0.13 -0.89 7.32 -25.92 -0.19 -1.08 16 10 C -0.11 -0.98 3.66 -89.81 -0.33 -1.31 16 11 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 12 C 0.13 1.56 5.50 -4.04 -0.02 1.54 16 13 N -0.74 -10.44 5.56 -60.29 -0.33 -10.77 16 14 C 0.53 10.36 7.85 -10.99 -0.09 10.27 16 15 O -0.52 -12.28 15.86 5.56 0.09 -12.19 16 16 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 17 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 18 C -0.53 -15.60 9.50 30.94 0.29 -15.31 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.63 13.22 55.49 0.73 -25.89 16 22 Si 0.92 21.85 29.55 -169.99 -5.02 16.82 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.13 -1.05 7.45 -25.82 -0.19 -1.24 16 27 N -0.25 -2.87 12.41 33.29 0.41 -2.45 16 28 N -0.09 -0.90 13.17 60.35 0.79 -0.10 16 29 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 30 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 32 H 0.19 0.21 8.06 -52.49 -0.42 -0.21 16 33 H 0.05 0.20 8.13 -51.93 -0.42 -0.22 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.34 1.99 8.37 -39.29 -0.33 1.66 16 36 H 0.07 0.42 7.91 -51.92 -0.41 0.01 16 37 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.82 7.87 -51.93 -0.41 0.42 16 40 H 0.40 4.66 8.47 -40.82 -0.35 4.31 16 41 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -39.20 396.87 -8.22 -47.42 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.93 Total: -0.14 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.79 Total: -7.44 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.66 Total: -46.51 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.20 -8.22 -47.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691767910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.871 kcal (2) G-P(sol) polarization free energy of solvation -39.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds