Wall clock time and date at job start Tue Mar 31 2020 22:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35314 * 125.86935 * 2 1 4 4 C 1.35351 * 106.17615 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.75184 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47392 * 95.00152 * 5 4 3 7 7 C 1.46898 * 110.99957 * 180.02562 * 6 5 4 8 8 H 1.08993 * 112.85167 * 23.79929 * 7 6 5 9 9 C 1.53777 * 113.61321 * 154.99910 * 7 6 5 10 10 C 1.53782 * 87.08471 * 89.19846 * 9 7 6 11 11 H 1.09001 * 113.61319 * 270.80387 * 10 9 7 12 12 C 1.52997 * 113.61871 * 139.98088 * 10 9 7 13 13 N 1.46505 * 109.47212 * 176.53036 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00024 * 22 20 18 24 24 H 1.48506 * 109.46989 * 210.00023 * 22 20 18 25 25 H 1.48506 * 109.47313 * 329.99924 * 22 20 18 26 26 C 1.53785 * 87.16968 * 25.38967 * 10 9 7 27 27 N 1.33776 * 106.49524 * 0.25765 * 4 3 2 28 28 N 1.28637 * 108.88486 * 359.56996 * 27 4 3 29 29 H 1.09005 * 109.46774 * 90.00234 * 1 2 3 30 30 H 1.09004 * 109.47028 * 209.99801 * 1 2 3 31 31 H 1.09003 * 109.47168 * 330.00332 * 1 2 3 32 32 H 1.07999 * 126.91159 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47286 * 335.00030 * 5 4 3 34 34 H 1.09004 * 109.47154 * 214.99796 * 5 4 3 35 35 H 1.00904 * 110.99582 * 303.95091 * 6 5 4 36 36 H 1.09011 * 113.61618 * 334.65198 * 9 7 6 37 37 H 1.09000 * 113.69499 * 203.75596 * 9 7 6 38 38 H 1.09002 * 109.47153 * 56.53028 * 12 10 9 39 39 H 1.09001 * 109.46832 * 296.53219 * 12 10 9 40 40 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 41 41 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 42 42 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 43 43 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.61195 * 89.16170 * 26 10 9 45 45 H 1.09001 * 113.61520 * 220.06304 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 -0.0006 5 6 4.7880 1.4733 -0.0003 6 7 5.2632 1.6425 1.3795 7 6 6.4885 2.4518 1.4188 8 1 6.5941 3.1024 0.5507 9 6 6.7078 3.1728 2.7593 10 6 7.4623 1.9153 3.2224 11 1 6.8202 1.1676 3.6881 12 6 8.7139 2.2207 4.0477 13 7 9.3128 0.9658 4.5091 14 6 10.4326 0.9892 5.2586 15 8 10.9443 2.0490 5.5516 16 6 11.0483 -0.3017 5.7337 17 16 12.5291 0.0595 6.7099 18 6 13.0299 -1.5784 7.1237 19 1 12.4530 -2.4232 6.7773 20 6 14.1652 -1.7828 7.8956 21 7 14.8674 -0.7531 8.3190 22 14 14.6957 -3.5192 8.3348 23 1 15.6160 -4.0349 7.2897 24 1 15.3928 -3.5070 9.6460 25 1 13.5000 -4.3960 8.4179 26 6 7.7554 1.6375 1.7385 27 7 3.4576 -0.6953 -0.0067 28 7 2.2191 -1.0431 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9382 2.1281 -0.0004 33 1 4.5759 2.4506 -0.4339 34 1 5.5560 0.9730 -0.5902 35 1 4.5450 2.0458 1.9623 36 1 5.7863 3.3573 3.3117 37 1 7.3397 4.0576 2.6825 38 1 8.4415 2.8313 4.9085 39 1 9.4324 2.7612 3.4315 40 1 8.9037 0.1182 4.2744 41 1 10.3298 -0.8417 6.3504 42 1 11.3202 -0.9129 4.8731 43 1 15.6610 -0.8960 8.8581 44 1 8.6745 2.1015 1.3808 45 1 7.6785 0.5844 1.4680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691767910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:02 Heat of formation + Delta-G solvation = 54.394215 kcal Electronic energy + Delta-G solvation = -25088.113527 eV Core-core repulsion = 21268.608073 eV Total energy + Delta-G solvation = -3819.505453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.17829 -40.87489 -39.94497 -36.52672 -35.53399 -34.66002 -34.57429 -32.02812 -31.11884 -28.85928 -28.22324 -27.58586 -26.70133 -26.00525 -23.09555 -22.96082 -22.11585 -21.76768 -20.08607 -19.66706 -18.15968 -17.79464 -17.54005 -17.39743 -16.87730 -16.72328 -16.47623 -16.14480 -15.79635 -15.69380 -15.45996 -15.14758 -14.72703 -14.50161 -14.42129 -14.10450 -13.74250 -13.64057 -13.38128 -13.18714 -13.16226 -13.03339 -12.88766 -12.63019 -12.61064 -12.41705 -11.79975 -11.76025 -11.65051 -11.46156 -11.14020 -11.09113 -10.98352 -10.84336 -10.27918 -10.23666 -10.05134 -9.27088 -8.66345 -8.34353 -6.12520 0.67065 1.27770 1.42712 1.47375 1.48137 1.58540 1.61749 1.63542 2.27161 2.35212 2.99611 3.19481 3.32677 3.46016 3.65810 3.75371 3.80426 3.92247 3.99328 4.06013 4.11718 4.20246 4.30050 4.34621 4.41818 4.51097 4.51619 4.64737 4.65875 4.69877 4.78012 4.89296 4.94260 4.96907 5.01958 5.19499 5.24426 5.35613 5.40937 5.42178 5.58855 5.70898 6.15979 6.20240 6.51286 6.53824 7.06826 7.26932 7.55520 8.75003 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.001565 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.818273 B =17889.334539 C =19099.293509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.027 4.027 4 C -0.037 4.037 5 C 0.153 3.847 6 N -0.676 5.676 7 C 0.072 3.928 8 H 0.077 0.923 9 C -0.123 4.123 10 C -0.107 4.107 11 H 0.098 0.902 12 C 0.129 3.871 13 N -0.711 5.711 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.131 4.131 17 S -0.150 6.150 18 C -0.549 4.549 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.259 1.259 26 C -0.130 4.130 27 N -0.300 5.300 28 N -0.132 5.132 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.235 0.765 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.350 0.650 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.414 0.586 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.715 8.293 -21.203 41.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.180 4.180 4 C -0.177 4.177 5 C 0.022 3.978 6 N -0.309 5.309 7 C -0.037 4.037 8 H 0.095 0.905 9 C -0.161 4.161 10 C -0.125 4.125 11 H 0.116 0.884 12 C 0.006 3.994 13 N -0.365 5.365 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.282 4.282 17 S 0.077 5.923 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.183 1.183 26 C -0.169 4.169 27 N -0.166 5.166 28 N -0.111 5.111 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.151 0.849 32 H 0.251 0.749 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.171 0.829 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.250 0.750 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -33.455 7.950 -20.641 40.106 hybrid contribution -0.519 -0.664 -0.093 0.848 sum -33.974 7.286 -20.734 40.463 Atomic orbital electron populations 1.22731 0.69969 1.07705 1.06627 1.47696 1.11006 1.04412 1.45164 1.24069 0.89870 0.96211 1.07893 1.22251 0.96482 0.90857 1.08117 1.20098 0.90540 0.96669 0.90446 1.60136 1.07027 1.53847 1.09928 1.22456 0.90098 0.93426 0.97767 0.90490 1.23164 1.00923 0.96411 0.95612 1.22649 0.94868 1.00065 0.94958 0.88408 1.21490 0.94595 0.85445 0.97863 1.45809 1.26489 1.11159 1.53019 1.20054 0.80664 0.89805 0.77737 1.90677 1.62907 1.33365 1.57723 1.23385 1.01734 0.98905 1.04171 1.85521 1.27926 1.13160 1.65650 1.23218 1.15023 0.92393 1.39006 0.90040 1.26120 0.95209 1.03114 0.94591 1.70182 1.17040 1.32694 1.34804 0.84951 0.78640 0.76538 0.77822 1.19263 1.20126 1.18340 1.23156 0.97654 1.01031 0.95039 1.75045 1.10164 1.14339 1.17035 1.78297 0.96774 1.13901 1.22172 0.87419 0.88033 0.84943 0.74869 0.90244 0.90762 0.82947 0.89804 0.88490 0.92588 0.92327 0.74971 0.87430 0.87409 0.91954 0.89893 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.03 11.39 127.77 1.46 1.43 16 2 N -0.29 -3.08 3.74 -369.22 -1.38 -4.46 16 3 C -0.03 -0.21 11.55 83.49 0.96 0.75 16 4 C -0.04 -0.55 6.76 41.59 0.28 -0.27 16 5 C 0.15 1.67 6.09 85.55 0.52 2.19 16 6 N -0.68 -7.86 6.44 -492.56 -3.17 -11.04 16 7 C 0.07 0.78 4.23 45.50 0.19 0.97 16 8 H 0.08 0.65 7.86 -2.39 -0.02 0.63 16 9 C -0.12 -1.32 7.32 31.12 0.23 -1.09 16 10 C -0.11 -1.69 3.66 -10.27 -0.04 -1.73 16 11 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 12 C 0.13 2.99 5.50 86.38 0.47 3.47 16 13 N -0.71 -19.49 5.56 -463.06 -2.57 -22.07 16 14 C 0.53 20.73 7.85 87.66 0.69 21.41 16 15 O -0.57 -27.36 15.86 -3.03 -0.05 -27.41 16 16 C -0.13 -5.46 6.16 71.24 0.44 -5.02 16 17 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 18 C -0.55 -32.23 9.50 67.95 0.65 -31.58 16 19 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.84 5.49 84.86 0.47 1.31 16 21 N -0.91 -56.91 13.22 21.65 0.29 -56.62 16 22 Si 1.00 44.62 29.55 68.60 2.03 46.64 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 C -0.13 -2.01 7.45 31.18 0.23 -1.78 16 27 N -0.30 -7.10 12.41 -48.60 -0.60 -7.70 16 28 N -0.13 -2.78 13.17 37.02 0.49 -2.29 16 29 H 0.11 -0.35 8.14 -2.38 -0.02 -0.37 16 30 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.23 -0.66 8.06 -2.91 -0.02 -0.69 16 33 H 0.08 0.37 8.13 -2.39 -0.02 0.35 16 34 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.35 3.12 8.37 -89.69 -0.75 2.37 16 36 H 0.08 0.72 7.91 -2.38 -0.02 0.70 16 37 H 0.10 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.47 7.87 -2.39 -0.02 1.45 16 40 H 0.41 8.99 8.47 -92.71 -0.79 8.21 16 41 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 42 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 43 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.08 1.31 7.92 -2.39 -0.02 1.29 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -90.04 396.87 -0.11 -90.16 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -0.52 Total: 14.46 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 6.55 Total: -9.94 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -6.96 Total: -104.17 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -90.04 -0.11 -90.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691767910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.550 kcal (2) G-P(sol) polarization free energy of solvation -90.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds