Wall clock time and date at job start Tue Mar 31 2020 23:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47291 * 299.99939 * 3 2 1 6 6 H 1.48504 * 109.47277 * 59.99640 * 3 2 1 7 7 C 1.38808 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00479 * 0.02562 * 7 2 1 10 10 C 1.47028 * 125.64456 * 0.04281 * 9 7 2 11 11 C 1.54372 * 107.28756 * 181.05791 * 10 9 7 12 12 C 1.55153 * 102.92169 * 22.13410 * 11 10 9 13 13 H 1.09005 * 111.00396 * 82.64098 * 12 11 10 14 14 C 1.52997 * 111.00636 * 206.45515 * 12 11 10 15 15 C 1.53000 * 109.47060 * 181.82451 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.34779 * 119.99872 * 179.97438 * 16 15 14 18 18 O 1.21553 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.47846 * 120.00003 * 179.97438 * 17 16 15 20 20 C 1.40026 * 120.55919 * 179.97438 * 19 17 16 21 21 C 1.38351 * 118.28618 * 179.97438 * 20 19 17 22 22 C 1.38354 * 119.30694 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.46225 * 179.97438 * 22 21 20 24 24 F 1.39898 * 109.46893 * 299.99751 * 23 22 21 25 25 F 1.39897 * 109.47109 * 59.99399 * 23 22 21 26 26 N 1.31928 * 121.07868 * 0.02562 * 22 21 20 27 27 C 1.31695 * 121.87897 * 359.68534 * 26 22 21 28 28 C 1.47420 * 125.65341 * 180.02562 * 9 7 2 29 29 H 0.97000 * 120.00144 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.88174 * 300.44072 * 10 9 7 31 31 H 1.08997 * 109.87962 * 61.44938 * 10 9 7 32 32 H 1.09001 * 110.70165 * 263.79237 * 11 10 9 33 33 H 1.08994 * 110.75467 * 140.50515 * 11 10 9 34 34 H 1.09002 * 109.47153 * 61.82132 * 14 12 11 35 35 H 1.09001 * 109.46832 * 301.82323 * 14 12 11 36 36 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 37 37 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 38 38 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 39 39 H 1.08000 * 120.85579 * 0.02562 * 20 19 17 40 40 H 1.08006 * 120.34705 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47151 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.72124 * 180.28770 * 27 26 22 43 43 H 1.08998 * 110.36866 * 37.06650 * 28 9 7 44 44 H 1.09004 * 110.45726 * 274.79691 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4490 -4.0445 0.0269 12 6 0.8514 -4.6560 0.6121 13 1 0.8558 -4.5964 1.7005 14 6 1.0369 -6.1008 0.1442 15 6 2.3026 -6.6831 0.7766 16 7 2.4806 -8.0663 0.3281 17 6 3.5367 -8.7840 0.7595 18 8 4.3417 -8.2834 1.5203 19 6 3.7160 -10.1802 0.3073 20 6 4.8092 -10.9363 0.7477 21 6 4.9308 -12.2381 0.2953 22 6 3.9780 -12.7463 -0.5696 23 6 4.1073 -14.1637 -1.0650 24 9 5.3139 -14.3070 -1.7583 25 9 4.0880 -15.0418 0.0239 26 7 2.9586 -12.0099 -0.9687 27 6 2.7963 -10.7680 -0.5618 28 6 1.9335 -3.7311 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5584 -2.0519 0.8822 31 1 -0.5536 -2.0823 -0.9020 32 1 -0.6318 -4.4189 -0.9804 33 1 -1.2991 -4.2519 0.6768 34 1 1.1305 -6.1219 -0.9416 35 1 0.1739 -6.6941 0.4461 36 1 3.1657 -6.0898 0.4747 37 1 2.2090 -6.6620 1.8623 38 1 1.8383 -8.4658 -0.2793 39 1 5.5382 -10.5144 1.4236 40 1 5.7612 -12.8510 0.6134 41 1 3.2756 -14.3930 -1.7311 42 1 1.9463 -10.1982 -0.9070 43 1 2.8323 -3.7403 0.6182 44 1 2.1692 -4.0435 -1.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691888809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:56 Heat of formation + Delta-G solvation = -80.739982 kcal Electronic energy + Delta-G solvation = -27733.002798 eV Core-core repulsion = 23321.504348 eV Total energy + Delta-G solvation = -4411.498450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.61170 -47.59561 -41.21585 -39.50512 -37.84490 -35.48312 -33.53831 -33.21967 -32.62171 -30.86500 -29.09035 -27.92661 -26.46274 -24.78404 -24.49305 -23.51881 -22.31789 -21.15410 -20.02382 -19.61053 -18.69631 -18.25497 -17.88860 -17.84976 -16.98212 -16.73281 -15.90741 -15.71246 -15.51290 -15.15783 -14.78971 -14.67761 -14.54274 -14.28609 -13.95554 -13.83830 -13.78829 -13.71102 -13.60304 -13.04898 -12.51983 -12.32147 -12.03839 -11.89666 -11.86005 -11.60369 -11.16466 -10.88344 -10.79927 -10.72711 -10.61500 -10.16712 -10.13990 -9.99355 -9.98300 -9.87548 -9.78920 -9.62940 -9.31356 -8.59211 -6.81236 -5.70157 -3.03286 -0.19056 0.50724 2.29223 2.62933 2.74900 3.14692 3.40384 3.46131 3.48489 3.55412 3.71143 4.02463 4.09755 4.26139 4.38100 4.39816 4.51057 4.59842 4.79219 4.89009 5.02369 5.20869 5.24986 5.37791 5.47078 5.56347 5.61350 5.70444 5.73441 5.80553 5.96271 6.02204 6.15214 6.21735 6.36472 6.53729 6.57390 6.71534 6.95251 6.97399 7.11396 7.58226 7.64154 7.80096 7.84348 8.27861 9.23960 9.84444 10.50512 11.41698 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.001626 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.099671 B =17211.702796 C =17610.953472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.719 5.719 17 C 0.558 3.442 18 O -0.526 6.526 19 C -0.161 4.161 20 C -0.016 4.016 21 C -0.137 4.137 22 C 0.066 3.934 23 C 0.324 3.676 24 F -0.191 7.191 25 F -0.191 7.191 26 N -0.459 5.459 27 C 0.136 3.864 28 C 0.139 3.861 29 H 0.251 0.749 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.399 0.601 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.170 0.830 43 H 0.037 0.963 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 -29.587 -1.481 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.177 4.177 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.371 5.371 17 C 0.343 3.657 18 O -0.403 6.403 19 C -0.166 4.166 20 C -0.042 4.042 21 C -0.157 4.157 22 C -0.072 4.072 23 C 0.269 3.731 24 F -0.172 7.172 25 F -0.172 7.172 26 N -0.168 5.168 27 C -0.023 4.023 28 C 0.013 3.987 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.176 0.824 40 H 0.168 0.832 41 H 0.152 0.848 42 H 0.187 0.813 43 H 0.055 0.945 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.270 -29.347 -1.491 29.693 hybrid contribution 0.768 1.079 0.287 1.355 sum 5.039 -28.268 -1.204 28.739 Atomic orbital electron populations 1.69980 1.04871 1.24841 1.57377 1.24807 0.95740 0.97686 1.02410 0.86046 0.78743 0.83794 0.77213 1.20502 1.21789 1.21776 1.19122 0.90482 0.82480 1.43391 0.90421 1.44493 1.01749 0.99952 1.87116 1.21151 0.84358 0.88363 1.00995 1.22905 0.95891 0.99499 0.99357 1.22267 0.97750 0.91800 1.00237 0.90534 1.21763 0.95977 0.96890 1.00909 1.21604 0.99464 0.79705 0.99827 1.46007 1.26632 1.15022 1.49390 1.17935 0.81794 0.84833 0.81169 1.90832 1.43156 1.71268 1.35005 1.21248 0.98158 0.96115 1.01100 1.21820 0.95368 0.92149 0.94876 1.21947 1.00037 0.96398 0.97316 1.21711 0.92825 0.96221 0.96471 1.20119 0.86300 0.83956 0.82691 1.93049 1.48858 1.96093 1.79207 1.93047 1.96873 1.70226 1.57091 1.67234 1.20274 1.06576 1.22711 1.22978 0.97236 0.90232 0.91844 1.21607 0.94302 0.86165 0.96607 0.93865 0.93703 0.94048 0.92549 0.92304 0.91143 0.91501 0.90474 0.90964 0.76571 0.82442 0.83220 0.84780 0.81324 0.94473 0.96534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 10.31 55.49 0.57 -26.71 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -15.49 3.39 -170.05 -0.58 -16.07 16 10 C 0.18 4.23 5.38 -3.04 -0.02 4.21 16 11 C -0.14 -2.42 6.42 -24.87 -0.16 -2.58 16 12 C -0.10 -1.59 3.03 -88.49 -0.27 -1.86 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.12 -1.31 4.84 -26.73 -0.13 -1.44 16 15 C 0.12 1.31 5.55 -4.04 -0.02 1.29 16 16 N -0.72 -6.48 5.51 -61.25 -0.34 -6.82 16 17 C 0.56 6.01 7.78 -12.33 -0.10 5.92 16 18 O -0.53 -7.73 16.42 5.32 0.09 -7.65 16 19 C -0.16 -1.36 5.89 -104.82 -0.62 -1.98 16 20 C -0.02 -0.12 9.72 -38.87 -0.38 -0.50 16 21 C -0.14 -0.95 9.60 -39.50 -0.38 -1.33 16 22 C 0.07 0.49 6.28 -82.51 -0.52 -0.03 16 23 C 0.32 1.95 5.54 36.01 0.20 2.15 16 24 F -0.19 -1.39 17.25 2.25 0.04 -1.35 16 25 F -0.19 -1.37 17.25 2.25 0.04 -1.33 16 26 N -0.46 -3.60 10.23 -9.13 -0.09 -3.69 16 27 C 0.14 0.95 10.71 -17.13 -0.18 0.77 16 28 C 0.14 2.79 6.03 -2.54 -0.02 2.77 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.04 1.20 7.38 -51.93 -0.38 0.81 16 31 H 0.04 1.10 7.50 -51.93 -0.39 0.72 16 32 H 0.06 0.91 8.04 -51.93 -0.42 0.50 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.01 7.60 -51.93 -0.39 0.62 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.40 2.32 6.54 -40.82 -0.27 2.05 16 39 H 0.16 1.15 7.74 -52.49 -0.41 0.74 16 40 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 41 H 0.13 0.49 8.10 -51.93 -0.42 0.07 16 42 H 0.17 0.67 6.42 -52.49 -0.34 0.34 16 43 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.02 0.33 7.95 -51.93 -0.41 -0.08 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -34.26 373.95 -8.42 -42.68 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.93 Total: -2.45 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.83 Total: 0.47 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.44 Total: -53.28 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.26 -8.42 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691888809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.060 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds