Wall clock time and date at job start Tue Mar 31 2020 23:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47291 * 299.99939 * 3 2 1 6 6 H 1.48504 * 109.47277 * 59.99640 * 3 2 1 7 7 C 1.38808 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00479 * 0.02562 * 7 2 1 10 10 C 1.47028 * 125.64456 * 0.04281 * 9 7 2 11 11 C 1.54372 * 107.28756 * 181.05791 * 10 9 7 12 12 C 1.55153 * 102.92169 * 22.13410 * 11 10 9 13 13 H 1.09005 * 111.00396 * 82.64098 * 12 11 10 14 14 C 1.52997 * 111.00636 * 206.45515 * 12 11 10 15 15 C 1.53000 * 109.47060 * 181.82451 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.34779 * 119.99872 * 179.97438 * 16 15 14 18 18 O 1.21553 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.47846 * 120.00003 * 179.97438 * 17 16 15 20 20 C 1.40026 * 120.55919 * 179.97438 * 19 17 16 21 21 C 1.38351 * 118.28618 * 179.97438 * 20 19 17 22 22 C 1.38354 * 119.30694 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.46225 * 179.97438 * 22 21 20 24 24 F 1.39898 * 109.46893 * 299.99751 * 23 22 21 25 25 F 1.39897 * 109.47109 * 59.99399 * 23 22 21 26 26 N 1.31928 * 121.07868 * 0.02562 * 22 21 20 27 27 C 1.31695 * 121.87897 * 359.68534 * 26 22 21 28 28 C 1.47420 * 125.65341 * 180.02562 * 9 7 2 29 29 H 0.97000 * 120.00144 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.88174 * 300.44072 * 10 9 7 31 31 H 1.08997 * 109.87962 * 61.44938 * 10 9 7 32 32 H 1.09001 * 110.70165 * 263.79237 * 11 10 9 33 33 H 1.08994 * 110.75467 * 140.50515 * 11 10 9 34 34 H 1.09002 * 109.47153 * 61.82132 * 14 12 11 35 35 H 1.09001 * 109.46832 * 301.82323 * 14 12 11 36 36 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 37 37 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 38 38 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 39 39 H 1.08000 * 120.85579 * 0.02562 * 20 19 17 40 40 H 1.08006 * 120.34705 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47151 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.72124 * 180.28770 * 27 26 22 43 43 H 1.08998 * 110.36866 * 37.06650 * 28 9 7 44 44 H 1.09004 * 110.45726 * 274.79691 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4490 -4.0445 0.0269 12 6 0.8514 -4.6560 0.6121 13 1 0.8558 -4.5964 1.7005 14 6 1.0369 -6.1008 0.1442 15 6 2.3026 -6.6831 0.7766 16 7 2.4806 -8.0663 0.3281 17 6 3.5367 -8.7840 0.7595 18 8 4.3417 -8.2834 1.5203 19 6 3.7160 -10.1802 0.3073 20 6 4.8092 -10.9363 0.7477 21 6 4.9308 -12.2381 0.2953 22 6 3.9780 -12.7463 -0.5696 23 6 4.1073 -14.1637 -1.0650 24 9 5.3139 -14.3070 -1.7583 25 9 4.0880 -15.0418 0.0239 26 7 2.9586 -12.0099 -0.9687 27 6 2.7963 -10.7680 -0.5618 28 6 1.9335 -3.7311 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5584 -2.0519 0.8822 31 1 -0.5536 -2.0823 -0.9020 32 1 -0.6318 -4.4189 -0.9804 33 1 -1.2991 -4.2519 0.6768 34 1 1.1305 -6.1219 -0.9416 35 1 0.1739 -6.6941 0.4461 36 1 3.1657 -6.0898 0.4747 37 1 2.2090 -6.6620 1.8623 38 1 1.8383 -8.4658 -0.2793 39 1 5.5382 -10.5144 1.4236 40 1 5.7612 -12.8510 0.6134 41 1 3.2756 -14.3930 -1.7311 42 1 1.9463 -10.1982 -0.9070 43 1 2.8323 -3.7403 0.6182 44 1 2.1692 -4.0435 -1.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691888809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:55 Heat of formation + Delta-G solvation = -103.313673 kcal Electronic energy + Delta-G solvation = -27733.981666 eV Core-core repulsion = 23321.504348 eV Total energy + Delta-G solvation = -4412.477318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11209 -48.10473 -41.84957 -40.30912 -39.35450 -36.58086 -34.85779 -34.04476 -33.43986 -32.33391 -30.71460 -28.81162 -27.74154 -26.46680 -25.04204 -24.36713 -23.36947 -21.99965 -21.79929 -20.88946 -19.34338 -18.89671 -18.72992 -18.52675 -18.34921 -17.47893 -16.98914 -16.67077 -16.47146 -16.31017 -16.07604 -15.56232 -15.42534 -15.36988 -15.03234 -14.65297 -14.47077 -14.42706 -14.34512 -14.08841 -13.82756 -13.67288 -13.58495 -13.30398 -13.06383 -12.82130 -12.66024 -12.38335 -12.23234 -11.97728 -11.80273 -11.69668 -11.38200 -11.31713 -11.29335 -11.20869 -10.77200 -10.71304 -10.58626 -10.14782 -8.87960 -7.85665 -5.20471 -0.79029 -0.03583 1.44112 1.44946 1.55456 1.56998 1.93896 2.17212 2.48792 2.51485 3.12491 3.23610 3.32247 3.47259 3.57589 3.65726 3.69623 3.80504 3.84069 3.92615 4.00479 4.10752 4.17041 4.33835 4.38471 4.41335 4.63482 4.68047 4.72936 4.78282 4.84221 4.92605 5.02268 5.14229 5.17593 5.20153 5.28015 5.34686 5.45519 5.55580 5.72718 5.81054 6.21658 6.37774 6.44795 7.05107 7.11541 7.79924 8.43628 9.24752 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.001626 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.099671 B =17211.702796 C =17610.953472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.632 5.632 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.085 4.085 13 H 0.072 0.928 14 C -0.101 4.101 15 C 0.122 3.878 16 N -0.703 5.703 17 C 0.559 3.441 18 O -0.573 6.573 19 C -0.173 4.173 20 C -0.022 4.022 21 C -0.140 4.140 22 C 0.061 3.939 23 C 0.326 3.674 24 F -0.199 7.199 25 F -0.198 7.198 26 N -0.468 5.468 27 C 0.144 3.856 28 C 0.132 3.868 29 H 0.246 0.754 30 H 0.006 0.994 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.418 0.582 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.200 0.800 43 H 0.032 0.968 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 -31.946 -2.253 32.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.358 5.358 10 C 0.054 3.946 11 C -0.160 4.160 12 C -0.105 4.105 13 H 0.091 0.909 14 C -0.139 4.139 15 C -0.002 4.002 16 N -0.355 5.355 17 C 0.345 3.655 18 O -0.454 6.454 19 C -0.178 4.178 20 C -0.048 4.048 21 C -0.160 4.160 22 C -0.077 4.077 23 C 0.271 3.729 24 F -0.180 7.180 25 F -0.179 7.179 26 N -0.177 5.177 27 C -0.015 4.015 28 C 0.007 3.993 29 H 0.055 0.945 30 H 0.024 0.976 31 H 0.021 0.979 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.257 0.743 39 H 0.174 0.826 40 H 0.183 0.817 41 H 0.179 0.821 42 H 0.217 0.783 43 H 0.051 0.949 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.944 -31.762 -2.291 32.088 hybrid contribution 0.908 1.777 0.521 2.062 sum 4.852 -29.985 -1.770 30.427 Atomic orbital electron populations 1.70204 1.06224 1.25100 1.58547 1.25657 0.96679 1.01030 1.02857 0.85021 0.78135 0.79504 0.76766 1.19138 1.21787 1.21876 1.19502 0.90940 0.84053 1.42590 0.90317 1.44853 1.02723 1.01292 1.86928 1.20969 0.83566 0.92709 0.97341 1.22767 0.97438 0.94355 1.01445 1.22147 0.94781 0.93838 0.99749 0.90943 1.21613 0.97031 0.93665 1.01549 1.21379 0.98753 0.80595 0.99446 1.45780 1.26575 1.14020 1.49155 1.18245 0.81309 0.85560 0.80340 1.90812 1.44893 1.72397 1.37268 1.21105 0.99268 0.94976 1.02443 1.21930 0.95381 0.92622 0.94897 1.22124 1.00548 0.96133 0.97156 1.22014 0.92685 0.96858 0.96174 1.20346 0.86668 0.83118 0.82738 1.93034 1.49572 1.96071 1.79326 1.93033 1.96899 1.70388 1.57629 1.67317 1.20474 1.06850 1.23029 1.23407 0.97375 0.90066 0.90652 1.21849 0.95434 0.84702 0.97288 0.94465 0.97599 0.97850 0.90391 0.89942 0.89779 0.88124 0.92679 0.91754 0.74345 0.82623 0.81702 0.82136 0.78302 0.94942 0.95626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.26 10.31 21.65 0.22 -58.04 16 2 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 3 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -32.82 3.39 -691.93 -2.35 -35.16 16 10 C 0.18 8.81 5.38 86.74 0.47 9.27 16 11 C -0.12 -4.02 6.42 31.80 0.20 -3.82 16 12 C -0.09 -2.52 3.03 -9.41 -0.03 -2.54 16 13 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 14 C -0.10 -1.85 4.84 30.59 0.15 -1.71 16 15 C 0.12 2.47 5.55 86.38 0.48 2.95 16 16 N -0.70 -10.79 5.51 -465.98 -2.57 -13.36 16 17 C 0.56 11.32 7.78 86.79 0.68 12.00 16 18 O -0.57 -16.88 16.42 -3.88 -0.06 -16.94 16 19 C -0.17 -2.64 5.89 -19.99 -0.12 -2.76 16 20 C -0.02 -0.32 9.72 22.73 0.22 -0.10 16 21 C -0.14 -1.74 9.60 22.32 0.21 -1.52 16 22 C 0.06 0.78 6.28 42.57 0.27 1.04 16 23 C 0.33 3.25 5.54 71.24 0.39 3.64 16 24 F -0.20 -2.57 17.25 44.97 0.78 -1.79 16 25 F -0.20 -2.50 17.25 44.97 0.78 -1.73 16 26 N -0.47 -6.09 10.23 -182.81 -1.87 -7.96 16 27 C 0.14 1.60 10.71 85.02 0.91 2.52 16 28 C 0.13 5.21 6.03 86.85 0.52 5.73 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.01 0.32 7.38 -2.38 -0.02 0.30 16 31 H 0.00 0.18 7.50 -2.39 -0.02 0.16 16 32 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 34 H 0.08 1.41 8.03 -2.39 -0.02 1.39 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.39 7.60 -2.39 -0.02 1.37 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.42 3.15 6.54 -92.70 -0.61 2.54 16 39 H 0.16 2.29 7.74 -2.91 -0.02 2.26 16 40 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.16 0.75 8.10 -2.39 -0.02 0.73 16 42 H 0.20 0.76 6.42 -2.91 -0.02 0.74 16 43 H 0.03 1.29 8.10 -2.39 -0.02 1.27 16 44 H 0.03 0.98 7.95 -2.39 -0.02 0.96 16 Total: -1.00 -78.04 373.95 3.07 -74.97 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 0.43 Total: 3.16 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.69 Total: 8.09 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -6.56 Total: -114.52 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.06 Total: -16.94 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 1.55 Total: -3.52 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -78.04 3.07 -74.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691888809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.342 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds