Wall clock time and date at job start Tue Mar 31 2020 22:32:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.35307 * 125.86774 * 2 1
4 4 C 1.35350 * 106.17738 * 180.02562 * 3 2 1
5 5 C 1.50700 * 126.75528 * 180.02562 * 4 3 2
6 6 N 1.46901 * 109.46997 * 94.97895 * 5 4 3
7 7 C 1.46905 * 110.99618 * 180.02562 * 6 5 4
8 8 C 1.53783 * 113.61212 * 254.13582 * 7 6 5
9 9 C 1.53956 * 87.01713 * 220.05101 * 8 7 6
10 10 C 1.53006 * 113.66392 * 139.93428 * 9 8 7
11 11 N 1.46496 * 109.47180 * 87.43979 * 10 9 8
12 12 C 1.34772 * 120.00058 * 179.97438 * 11 10 9
13 13 O 1.21283 * 120.00501 * 359.97438 * 12 11 10
14 14 C 1.50705 * 120.00045 * 179.97438 * 12 11 10
15 15 S 1.81008 * 109.46950 * 179.97438 * 14 12 11
16 16 C 1.76199 * 99.99776 * 179.97438 * 15 14 12
17 17 H 1.08002 * 120.00258 * 0.02562 * 16 15 14
18 18 C 1.38798 * 120.00109 * 179.97438 * 16 15 14
19 19 N 1.31634 * 119.99912 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 120.00258 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47366 * 89.99977 * 20 18 16
22 22 H 1.48498 * 109.47215 * 210.00197 * 20 18 16
23 23 H 1.48493 * 109.47184 * 330.00339 * 20 18 16
24 24 C 1.53770 * 87.11197 * 25.36280 * 9 8 7
25 25 N 1.33771 * 106.49501 * 359.97438 * 4 3 2
26 26 N 1.28634 * 108.88748 * 0.02562 * 25 4 3
27 27 H 1.08992 * 109.47315 * 270.00105 * 1 2 3
28 28 H 1.09001 * 109.46739 * 30.00363 * 1 2 3
29 29 H 1.08998 * 109.47011 * 149.99887 * 1 2 3
30 30 H 1.08003 * 126.91448 * 359.97115 * 3 2 1
31 31 H 1.08999 * 109.47138 * 214.97492 * 5 4 3
32 32 H 1.08993 * 109.46749 * 334.97932 * 5 4 3
33 33 H 1.00900 * 110.99911 * 303.95281 * 6 5 4
34 34 H 1.08992 * 112.85306 * 25.32786 * 7 6 5
35 35 H 1.09003 * 113.61262 * 334.56801 * 8 7 6
36 36 H 1.08992 * 113.61638 * 105.47041 * 8 7 6
37 37 H 1.09001 * 113.61017 * 270.79950 * 9 8 7
38 38 H 1.09008 * 109.46757 * 207.43376 * 10 9 8
39 39 H 1.08996 * 109.47358 * 327.43729 * 10 9 8
40 40 H 0.97005 * 119.99946 * 359.97438 * 11 10 9
41 41 H 1.08994 * 109.47468 * 299.99841 * 14 12 11
42 42 H 1.08996 * 109.46985 * 60.00038 * 14 12 11
43 43 H 0.96997 * 120.00299 * 180.02562 * 19 18 16
44 44 H 1.09003 * 113.61257 * 220.08718 * 24 9 8
45 45 H 1.09010 * 113.69257 * 89.20215 * 24 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2578 1.0965 0.0000
4 6 3.5322 0.6404 -0.0006
5 6 4.7881 1.4734 -0.0003
6 7 5.2628 1.6429 1.3795
7 6 6.4882 2.4523 1.4188
8 6 7.7588 1.6329 1.7001
9 6 8.2147 2.7982 2.5971
10 6 8.8950 2.3472 3.8913
11 7 10.3274 2.1573 3.6495
12 6 11.1333 1.7590 4.6536
13 8 10.6729 1.5583 5.7576
14 6 12.6067 1.5631 4.4047
15 16 13.4117 1.0312 5.9362
16 6 15.0741 0.8815 5.3718
17 1 15.3169 1.1011 4.3426
18 6 16.0720 0.4824 6.2502
19 7 15.7762 0.2152 7.5048
20 14 17.8345 0.3244 5.6522
21 1 18.5371 1.6200 5.8340
22 1 18.5298 -0.7297 6.4337
23 1 17.8380 -0.0428 4.2134
24 6 6.7265 3.1438 2.7715
25 7 3.4576 -0.6952 -0.0003
26 7 2.2192 -1.0431 -0.0002
27 1 -0.3633 0.0000 1.0276
28 1 -0.3633 0.8900 -0.5139
29 1 -0.3633 -0.8900 -0.5138
30 1 1.9381 2.1281 -0.0004
31 1 5.5562 0.9729 -0.5899
32 1 4.5760 2.4505 -0.4342
33 1 4.5445 2.0463 1.9621
34 1 6.5809 3.1218 0.5638
35 1 7.5704 0.7089 2.2469
36 1 8.3867 1.4855 0.8215
37 1 8.7811 3.5627 2.0653
38 1 8.7540 3.1074 4.6598
39 1 8.4551 1.4074 4.2246
40 1 10.6957 2.3181 2.7666
41 1 12.7475 0.8026 3.6368
42 1 13.0468 2.5026 4.0707
43 1 16.4735 -0.0633 8.1188
44 1 6.5223 4.2144 2.7566
45 1 6.2541 2.6345 3.6116
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001692332202.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:32:12
Heat of formation + Delta-G solvation = 52.242449 kcal
Electronic energy + Delta-G solvation = -24917.150986 eV
Core-core repulsion = 21097.552225 eV
Total energy + Delta-G solvation = -3819.598761 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.18594 -40.85102 -39.89057 -36.59216 -35.54468 -34.72660 -34.57092 -32.07724
-31.14638 -28.87443 -28.21353 -27.58414 -26.71576 -26.07499 -22.98213 -22.59194
-22.11379 -21.82710 -20.35557 -19.74085 -18.15528 -17.79072 -17.58136 -17.39713
-16.87152 -16.71118 -16.42326 -16.35746 -15.74505 -15.69788 -15.44238 -15.15073
-14.70011 -14.54082 -14.39595 -14.07529 -13.76299 -13.55091 -13.39969 -13.26397
-13.15615 -12.89968 -12.86085 -12.66748 -12.60341 -12.41011 -11.80558 -11.76086
-11.66306 -11.52614 -11.14610 -11.13116 -10.99032 -10.86911 -10.26562 -10.22901
-10.05908 -9.28060 -8.66037 -8.33622 -6.12000 0.66305 1.28325 1.43479
1.47768 1.48735 1.59039 1.61194 1.64033 2.27760 2.34379 3.00507
3.27685 3.33452 3.46583 3.62731 3.73358 3.81598 3.92745 3.99694
4.06282 4.11367 4.19712 4.31571 4.33875 4.34670 4.48470 4.52266
4.53587 4.64367 4.71383 4.77068 4.90531 4.93999 4.99131 5.02585
5.17208 5.19264 5.32866 5.42625 5.43968 5.57828 5.70407 6.20819
6.21179 6.51045 6.55518 7.07504 7.28512 7.54740 8.75781
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.027200 B = 0.001401 C = 0.001383
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1029.149316 B =19974.888692 C =20239.729178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.290 5.290
3 C -0.028 4.028
4 C -0.038 4.038
5 C 0.151 3.849
6 N -0.688 5.688
7 C 0.071 3.929
8 C -0.127 4.127
9 C -0.112 4.112
10 C 0.133 3.867
11 N -0.710 5.710
12 C 0.530 3.470
13 O -0.570 6.570
14 C -0.129 4.129
15 S -0.155 6.155
16 C -0.547 4.547
17 H 0.083 0.917
18 C 0.013 3.987
19 N -0.912 5.912
20 Si 1.000 3.000
21 H -0.267 1.267
22 H -0.278 1.278
23 H -0.258 1.258
24 C -0.123 4.123
25 N -0.302 5.302
26 N -0.133 5.133
27 H 0.105 0.895
28 H 0.134 0.866
29 H 0.102 0.898
30 H 0.236 0.764
31 H 0.074 0.926
32 H 0.081 0.919
33 H 0.348 0.652
34 H 0.097 0.903
35 H 0.065 0.935
36 H 0.071 0.929
37 H 0.118 0.882
38 H 0.058 0.942
39 H 0.048 0.952
40 H 0.416 0.584
41 H 0.108 0.892
42 H 0.112 0.888
43 H 0.271 0.729
44 H 0.091 0.909
45 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -32.968 11.053 -22.652 41.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.083 5.083
3 C -0.181 4.181
4 C -0.178 4.178
5 C 0.020 3.980
6 N -0.321 5.321
7 C -0.038 4.038
8 C -0.166 4.166
9 C -0.131 4.131
10 C 0.009 3.991
11 N -0.363 5.363
12 C 0.316 3.684
13 O -0.449 6.449
14 C -0.280 4.280
15 S 0.072 5.928
16 C -0.695 4.695
17 H 0.101 0.899
18 C -0.191 4.191
19 N -0.549 5.549
20 Si 0.821 3.179
21 H -0.192 1.192
22 H -0.203 1.203
23 H -0.182 1.182
24 C -0.161 4.161
25 N -0.168 5.168
26 N -0.112 5.112
27 H 0.123 0.877
28 H 0.152 0.848
29 H 0.121 0.879
30 H 0.252 0.748
31 H 0.092 0.908
32 H 0.099 0.901
33 H 0.168 0.832
34 H 0.114 0.886
35 H 0.084 0.916
36 H 0.090 0.910
37 H 0.136 0.864
38 H 0.076 0.924
39 H 0.066 0.934
40 H 0.253 0.747
41 H 0.127 0.873
42 H 0.130 0.870
43 H 0.080 0.920
44 H 0.109 0.891
45 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -33.414 8.493 -20.678 40.202
hybrid contribution 1.198 1.546 -1.450 2.435
sum -32.216 10.039 -22.128 40.352
Atomic orbital electron populations
1.22733 0.69932 1.07800 1.06567 1.47706 1.11026 1.04414 1.45149
1.24074 0.89834 0.96226 1.07921 1.22317 0.96638 0.90851 1.08022
1.20129 0.90495 0.96666 0.90663 1.60443 1.07693 1.54052 1.09893
1.22954 0.89351 0.93663 0.97835 1.23193 0.96954 0.97038 0.99400
1.22649 0.96375 0.99557 0.94482 1.21384 0.79131 1.00199 0.98385
1.45756 1.08555 1.69052 1.12973 1.20113 0.87982 0.75874 0.84445
1.90687 1.77022 1.51634 1.25548 1.23375 0.94664 1.06223 1.03752
1.85596 1.05718 1.88418 1.13024 1.23215 0.93213 1.53352 0.99675
0.89866 1.26139 1.04614 0.93826 0.94540 1.70190 1.35509 1.44016
1.05145 0.84939 0.75886 0.78350 0.78709 1.19179 1.20322 1.18208
1.23119 0.94099 1.01615 0.97316 1.75042 1.10210 1.14453 1.17116
1.78291 0.96763 1.13926 1.22209 0.87675 0.84755 0.87904 0.74780
0.90784 0.90081 0.83229 0.88563 0.91643 0.91010 0.86357 0.92395
0.93384 0.74651 0.87345 0.87012 0.92000 0.89083 0.90093
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.01 11.39 127.77 1.46 1.46 16
2 N -0.29 -3.29 3.74 -369.24 -1.38 -4.67 16
3 C -0.03 -0.23 11.55 83.49 0.96 0.73 16
4 C -0.04 -0.60 6.76 41.60 0.28 -0.32 16
5 C 0.15 1.75 6.10 85.56 0.52 2.27 16
6 N -0.69 -8.94 6.54 -492.86 -3.22 -12.17 16
7 C 0.07 0.76 4.12 45.44 0.19 0.95 16
8 C -0.13 -1.97 7.45 31.18 0.23 -1.74 16
9 C -0.11 -1.54 3.75 -10.21 -0.04 -1.58 16
10 C 0.13 3.07 5.51 86.38 0.48 3.54 16
11 N -0.71 -18.54 5.56 -463.05 -2.57 -21.12 16
12 C 0.53 20.41 7.85 87.66 0.69 21.09 16
13 O -0.57 -27.70 15.86 -3.04 -0.05 -27.75 16
14 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16
15 S -0.15 -8.82 20.57 -56.49 -1.16 -9.98 16
16 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16
17 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16
18 C 0.01 0.78 5.49 84.86 0.47 1.24 16
19 N -0.91 -56.96 13.22 21.65 0.29 -56.68 16
20 Si 1.00 44.20 29.55 68.60 2.03 46.23 16
21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16
22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16
24 C -0.12 -1.34 7.23 31.12 0.22 -1.12 16
25 N -0.30 -7.51 12.41 -48.60 -0.60 -8.12 16
26 N -0.13 -2.91 13.17 37.02 0.49 -2.42 16
27 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16
28 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16
29 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16
30 H 0.24 -0.56 8.06 -2.91 -0.02 -0.58 16
31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
32 H 0.08 0.38 8.13 -2.39 -0.02 0.37 16
33 H 0.35 3.64 8.55 -89.69 -0.77 2.88 16
34 H 0.10 0.66 7.88 -2.39 -0.02 0.64 16
35 H 0.06 1.41 7.90 -2.39 -0.02 1.40 16
36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16
38 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16
39 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16
40 H 0.42 7.80 8.47 -92.70 -0.79 7.01 16
41 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16
42 H 0.11 4.04 8.14 -2.40 -0.02 4.03 16
43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16
44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
45 H 0.08 1.11 8.10 -2.38 -0.02 1.09 16
Total: -1.00 -92.15 397.28 -0.19 -92.33
By element:
Atomic # 1 Polarization: 14.32 SS G_CDS: -0.54 Total: 13.78 kcal
Atomic # 6 Polarization: -15.98 SS G_CDS: 6.54 Total: -9.44 kcal
Atomic # 7 Polarization: -98.16 SS G_CDS: -7.01 Total: -105.17 kcal
Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal
Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal
Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal
Total: -92.15 -0.19 -92.33 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001692332202.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.575 kcal
(2) G-P(sol) polarization free energy of solvation -92.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.428 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.242 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds