Wall clock time and date at job start Tue Mar 31 2020 23:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00611 * 2 1 4 4 H 1.48491 * 109.47156 * 240.00341 * 3 2 1 5 5 H 1.48501 * 109.46373 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46907 * 119.99955 * 3 2 1 7 7 C 1.38953 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00385 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00233 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00173 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00486 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47575 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00144 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.46950 * 185.04844 * 14 13 12 16 16 H 1.08991 * 109.87828 * 308.26005 * 15 14 13 17 17 C 1.54330 * 109.88290 * 69.27608 * 15 14 13 18 18 C 1.55154 * 102.94356 * 141.61005 * 17 15 14 19 19 C 1.54911 * 101.58065 * 324.49363 * 18 17 15 20 20 N 1.47025 * 109.88096 * 187.07879 * 15 14 13 21 21 C 1.34779 * 125.64424 * 61.59783 * 20 15 14 22 22 O 1.21739 * 119.99575 * 186.87626 * 21 20 15 23 23 C 1.46370 * 120.00254 * 6.87537 * 21 20 15 24 24 C 1.33977 * 119.23304 * 358.43138 * 23 21 20 25 25 O 1.34999 * 121.69128 * 180.35138 * 24 23 21 26 26 C 1.43248 * 116.76382 * 342.81400 * 25 24 23 27 27 C 1.53557 * 108.08498 * 45.48858 * 26 25 24 28 28 O 1.36214 * 119.23185 * 178.16148 * 23 21 20 29 29 H 0.96999 * 119.99753 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00008 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47050 * 59.99685 * 12 10 9 32 32 H 1.08998 * 109.47112 * 299.99694 * 12 10 9 33 33 H 1.00900 * 110.99875 * 303.95115 * 13 12 10 34 34 H 1.08996 * 109.47108 * 65.04210 * 14 13 12 35 35 H 1.09003 * 109.46659 * 305.04679 * 14 13 12 36 36 H 1.08998 * 110.71660 * 259.96897 * 17 15 14 37 37 H 1.08990 * 110.71994 * 23.24388 * 17 15 14 38 38 H 1.08997 * 111.01044 * 82.56902 * 18 17 15 39 39 H 1.09003 * 111.00605 * 206.38538 * 18 17 15 40 40 H 1.09005 * 110.36676 * 155.84840 * 19 18 17 41 41 H 1.08993 * 110.36811 * 278.17131 * 19 18 17 42 42 H 1.08003 * 119.15388 * 0.32150 * 24 23 21 43 43 H 1.08992 * 109.74334 * 165.13495 * 26 25 24 44 44 H 1.08996 * 109.73974 * 285.84559 * 26 25 24 45 45 H 1.08999 * 109.75247 * 61.47795 * 27 26 25 46 46 H 1.09002 * 109.75460 * 182.16746 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.4976 -7.2709 -0.0028 15 6 2.5175 -8.4043 0.1236 16 1 3.2976 -8.2865 -0.6283 17 6 3.1427 -8.3929 1.5346 18 6 3.2731 -9.9023 1.8692 19 6 2.0037 -10.4809 1.1956 20 7 1.8469 -9.7016 -0.0460 21 6 1.1957 -10.1103 -1.1530 22 8 0.5696 -11.1543 -1.1403 23 6 1.2412 -9.2990 -2.3705 24 6 1.9084 -8.1373 -2.3580 25 8 1.9765 -7.3468 -3.4502 26 6 1.6460 -7.9516 -4.7059 27 6 0.3623 -8.7728 -4.5162 28 8 0.6088 -9.7454 -3.4913 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6172 -4.9205 -0.8913 32 1 0.6165 -4.9210 0.8886 33 1 2.8328 -5.9123 -0.7830 34 1 0.9436 -7.3829 -0.9347 35 1 0.8054 -7.3095 0.8383 36 1 4.1224 -7.9155 1.5184 37 1 2.4821 -7.8960 2.2450 38 1 4.1762 -10.3238 1.4279 39 1 3.2537 -10.0668 2.9466 40 1 2.1444 -11.5371 0.9653 41 1 1.1361 -10.3448 1.8411 42 1 2.4041 -7.8250 -1.4507 43 1 1.4804 -7.1776 -5.4552 44 1 2.4576 -8.6057 -5.0244 45 1 -0.4544 -8.1158 -4.2169 46 1 0.1066 -9.2772 -5.4481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698727623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:12 Heat of formation + Delta-G solvation = -61.649768 kcal Electronic energy + Delta-G solvation = -30552.446118 eV Core-core repulsion = 26252.862998 eV Total energy + Delta-G solvation = -4299.583120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81753 -40.17776 -38.48531 -37.97148 -36.90878 -35.58615 -33.93236 -33.24327 -31.42004 -31.23649 -30.46640 -28.67824 -27.01609 -25.90929 -24.77281 -23.82956 -22.81945 -21.66965 -20.81078 -20.06708 -19.20652 -18.49966 -17.93545 -17.53021 -17.26457 -16.74394 -16.16641 -15.80518 -15.41285 -15.15763 -14.91563 -14.76113 -14.55648 -14.41503 -14.30588 -14.29218 -13.71775 -13.62296 -13.35842 -13.12867 -12.96500 -12.71672 -12.33698 -12.10053 -11.76100 -11.64323 -11.50643 -11.43361 -11.32076 -11.13613 -11.01589 -10.98101 -10.74842 -10.46132 -10.23568 -10.07408 -9.52124 -9.03637 -8.66473 -8.36518 -8.06561 -7.98411 -6.43787 -3.84767 1.07450 2.20602 2.85037 3.06220 3.18463 3.24447 3.26231 3.29499 3.87671 4.00357 4.03937 4.16742 4.17308 4.25671 4.51297 4.54749 4.58079 4.63560 4.74396 4.82904 4.89419 5.02941 5.05535 5.13767 5.21522 5.23354 5.34517 5.48204 5.49904 5.56376 5.62472 5.68291 5.76099 5.84520 5.90604 5.94581 6.07633 6.20468 6.52404 6.94139 7.03677 7.18249 7.44510 7.52986 7.91812 8.03273 8.58361 9.15329 9.51548 10.02532 10.73817 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.002865 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.719620 B = 9769.979466 C =11203.203399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.659 5.659 14 C 0.016 3.984 15 C 0.111 3.889 16 H 0.095 0.905 17 C -0.108 4.108 18 C -0.138 4.138 19 C 0.112 3.888 20 N -0.610 5.610 21 C 0.595 3.405 22 O -0.525 6.525 23 C -0.092 4.092 24 C -0.031 4.031 25 O -0.293 6.293 26 C 0.009 3.991 27 C 0.018 3.982 28 O -0.288 6.288 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.350 0.650 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.226 0.774 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -18.845 -3.278 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.293 5.293 14 C -0.114 4.114 15 C 0.008 3.992 16 H 0.112 0.888 17 C -0.146 4.146 18 C -0.176 4.176 19 C -0.010 4.010 20 N -0.346 5.346 21 C 0.385 3.615 22 O -0.402 6.402 23 C -0.141 4.141 24 C -0.096 4.096 25 O -0.205 6.205 26 C -0.066 4.066 27 C -0.058 4.058 28 O -0.202 6.202 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.170 0.830 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.241 0.759 43 H 0.141 0.859 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.229 -19.252 -2.747 19.574 hybrid contribution -0.792 0.975 -1.271 1.787 sum 1.437 -18.277 -4.017 18.769 Atomic orbital electron populations 1.69603 1.05951 1.28297 1.50428 1.25263 0.95624 0.99732 0.97259 0.85918 0.78769 0.80450 0.79091 1.19900 1.20996 1.19856 1.19656 0.93350 0.82203 1.47767 0.87920 1.41840 1.09204 1.04579 1.64232 1.19715 0.88359 0.84609 0.84632 1.90524 1.13646 1.87022 1.55496 1.21665 0.94220 0.90671 1.01477 1.60068 1.18822 0.99239 1.51134 1.23035 0.96259 0.89519 1.02574 1.21957 0.94517 0.82677 1.00075 0.88841 1.22576 1.02693 0.95830 0.93518 1.22888 0.97347 0.95919 1.01415 1.22269 0.98233 0.96252 0.84244 1.48222 1.55024 1.17404 1.13928 1.16680 0.78944 0.84867 0.80993 1.90840 1.41259 1.24353 1.83783 1.20118 1.05117 0.98565 0.90268 1.26089 0.97719 0.92487 0.93285 1.86255 1.82734 1.37340 1.14141 1.23762 0.97728 0.99588 0.85544 1.23685 0.97282 0.92615 0.92176 1.86426 1.74515 1.34982 1.24239 0.91800 0.77465 0.93597 0.89390 0.82970 0.93305 0.89418 0.88817 0.89344 0.90443 0.89273 0.90107 0.90908 0.75895 0.85945 0.90073 0.90409 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 10 C 0.44 10.00 7.82 -10.99 -0.09 9.91 16 11 O -0.58 -15.10 15.78 5.54 0.09 -15.02 16 12 C 0.05 0.87 6.16 -4.98 -0.03 0.84 16 13 N -0.66 -9.44 5.95 -115.52 -0.69 -10.12 16 14 C 0.02 0.19 4.08 -3.83 -0.02 0.17 16 15 C 0.11 1.11 2.32 -66.95 -0.16 0.95 16 16 H 0.09 0.90 6.18 -51.93 -0.32 0.58 16 17 C -0.11 -0.91 6.33 -24.89 -0.16 -1.07 16 18 C -0.14 -0.93 7.08 -24.58 -0.17 -1.11 16 19 C 0.11 1.00 6.88 -2.53 -0.02 0.98 16 20 N -0.61 -6.82 3.07 -185.72 -0.57 -7.39 16 21 C 0.59 8.56 7.56 -12.99 -0.10 8.46 16 22 O -0.53 -9.29 17.23 -10.05 -0.17 -9.47 16 23 C -0.09 -1.26 6.33 -37.81 -0.24 -1.50 16 24 C -0.03 -0.38 7.40 29.23 0.22 -0.16 16 25 O -0.29 -3.56 10.47 -30.82 -0.32 -3.89 16 26 C 0.01 0.08 7.29 37.45 0.27 0.35 16 27 C 0.02 0.17 7.32 37.45 0.27 0.44 16 28 O -0.29 -3.95 10.29 -45.75 -0.47 -4.42 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.35 5.24 7.93 -39.29 -0.31 4.93 16 34 H 0.05 0.61 4.62 -51.93 -0.24 0.37 16 35 H 0.09 0.99 7.96 -51.93 -0.41 0.58 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.78 7.73 -51.93 -0.40 0.38 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.23 2.54 0.94 -80.30 -0.08 2.46 16 43 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -34.64 372.00 -7.58 -42.22 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.24 Total: 13.75 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.45 Total: 10.44 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.59 Total: -54.92 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.88 Total: -32.79 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.64 -7.58 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698727623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.431 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds