Wall clock time and date at job start Tue Mar 31 2020 23:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00611 * 2 1 4 4 H 1.48491 * 109.47156 * 240.00341 * 3 2 1 5 5 H 1.48501 * 109.46373 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46907 * 119.99955 * 3 2 1 7 7 C 1.38953 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00385 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00233 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00173 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00486 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47575 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00144 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.46950 * 185.04844 * 14 13 12 16 16 H 1.08991 * 109.87828 * 308.26005 * 15 14 13 17 17 C 1.54330 * 109.88290 * 69.27608 * 15 14 13 18 18 C 1.55154 * 102.94356 * 141.61005 * 17 15 14 19 19 C 1.54911 * 101.58065 * 324.49363 * 18 17 15 20 20 N 1.47025 * 109.88096 * 187.07879 * 15 14 13 21 21 C 1.34779 * 125.64424 * 61.59783 * 20 15 14 22 22 O 1.21739 * 119.99575 * 186.87626 * 21 20 15 23 23 C 1.46370 * 120.00254 * 6.87537 * 21 20 15 24 24 C 1.33977 * 119.23304 * 358.43138 * 23 21 20 25 25 O 1.34999 * 121.69128 * 180.35138 * 24 23 21 26 26 C 1.43248 * 116.76382 * 342.81400 * 25 24 23 27 27 C 1.53557 * 108.08498 * 45.48858 * 26 25 24 28 28 O 1.36214 * 119.23185 * 178.16148 * 23 21 20 29 29 H 0.96999 * 119.99753 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00008 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47050 * 59.99685 * 12 10 9 32 32 H 1.08998 * 109.47112 * 299.99694 * 12 10 9 33 33 H 1.00900 * 110.99875 * 303.95115 * 13 12 10 34 34 H 1.08996 * 109.47108 * 65.04210 * 14 13 12 35 35 H 1.09003 * 109.46659 * 305.04679 * 14 13 12 36 36 H 1.08998 * 110.71660 * 259.96897 * 17 15 14 37 37 H 1.08990 * 110.71994 * 23.24388 * 17 15 14 38 38 H 1.08997 * 111.01044 * 82.56902 * 18 17 15 39 39 H 1.09003 * 111.00605 * 206.38538 * 18 17 15 40 40 H 1.09005 * 110.36676 * 155.84840 * 19 18 17 41 41 H 1.08993 * 110.36811 * 278.17131 * 19 18 17 42 42 H 1.08003 * 119.15388 * 0.32150 * 24 23 21 43 43 H 1.08992 * 109.74334 * 165.13495 * 26 25 24 44 44 H 1.08996 * 109.73974 * 285.84559 * 26 25 24 45 45 H 1.08999 * 109.75247 * 61.47795 * 27 26 25 46 46 H 1.09002 * 109.75460 * 182.16746 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.4976 -7.2709 -0.0028 15 6 2.5175 -8.4043 0.1236 16 1 3.2976 -8.2865 -0.6283 17 6 3.1427 -8.3929 1.5346 18 6 3.2731 -9.9023 1.8692 19 6 2.0037 -10.4809 1.1956 20 7 1.8469 -9.7016 -0.0460 21 6 1.1957 -10.1103 -1.1530 22 8 0.5696 -11.1543 -1.1403 23 6 1.2412 -9.2990 -2.3705 24 6 1.9084 -8.1373 -2.3580 25 8 1.9765 -7.3468 -3.4502 26 6 1.6460 -7.9516 -4.7059 27 6 0.3623 -8.7728 -4.5162 28 8 0.6088 -9.7454 -3.4913 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3906 -0.0005 31 1 0.6172 -4.9205 -0.8913 32 1 0.6165 -4.9210 0.8886 33 1 2.8328 -5.9123 -0.7830 34 1 0.9436 -7.3829 -0.9347 35 1 0.8054 -7.3095 0.8383 36 1 4.1224 -7.9155 1.5184 37 1 2.4821 -7.8960 2.2450 38 1 4.1762 -10.3238 1.4279 39 1 3.2537 -10.0668 2.9466 40 1 2.1444 -11.5371 0.9653 41 1 1.1361 -10.3448 1.8411 42 1 2.4041 -7.8250 -1.4507 43 1 1.4804 -7.1776 -5.4552 44 1 2.4576 -8.6057 -5.0244 45 1 -0.4544 -8.1158 -4.2169 46 1 0.1066 -9.2772 -5.4481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698727623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:11 Heat of formation + Delta-G solvation = -88.416422 kcal Electronic energy + Delta-G solvation = -30553.606807 eV Core-core repulsion = 26252.862998 eV Total energy + Delta-G solvation = -4300.743809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.73601 -41.06405 -40.12394 -39.16115 -37.86318 -36.74497 -35.81560 -34.22559 -33.24066 -32.22464 -31.43498 -29.57169 -28.29498 -27.01031 -26.11189 -25.00172 -23.83788 -22.42061 -21.68012 -21.22223 -20.69508 -19.86247 -19.39772 -18.45276 -18.18564 -17.96694 -17.19399 -17.13270 -16.68972 -16.39339 -16.05873 -15.89772 -15.80618 -15.53968 -15.44030 -15.21365 -15.10290 -15.02255 -14.38284 -14.02756 -13.90530 -13.77057 -13.60023 -13.41737 -13.24114 -12.89153 -12.84982 -12.56174 -12.40027 -12.14082 -12.10893 -12.07395 -11.91102 -11.74446 -11.53974 -11.46502 -11.10323 -10.34960 -9.98707 -9.95066 -9.63303 -9.12263 -8.43980 -5.92404 0.08986 1.32001 1.42083 1.44191 1.54731 1.88721 2.08408 2.15324 2.29230 2.41464 2.90364 3.23657 3.31379 3.34283 3.38386 3.52022 3.62874 3.70647 3.82544 3.88873 4.04428 4.15104 4.18654 4.27513 4.32021 4.38884 4.49609 4.53759 4.54134 4.56326 4.68077 4.71141 4.80144 4.94673 4.99125 5.17179 5.24710 5.40248 5.43638 5.67720 5.71076 6.04610 6.11258 6.20965 6.28898 6.62265 6.89747 7.15250 7.59237 8.13803 8.73192 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.002865 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.719620 B = 9769.979466 C =11203.203399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.082 0.918 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.066 3.934 13 N -0.660 5.660 14 C 0.024 3.976 15 C 0.112 3.888 16 H 0.101 0.899 17 C -0.106 4.106 18 C -0.122 4.122 19 C 0.102 3.898 20 N -0.602 5.602 21 C 0.588 3.412 22 O -0.571 6.571 23 C -0.112 4.112 24 C -0.015 4.015 25 O -0.309 6.309 26 C 0.004 3.996 27 C 0.013 3.987 28 O -0.315 6.315 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.347 0.653 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.232 0.768 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 -18.630 -3.120 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.100 0.900 9 N -0.211 5.211 10 C 0.229 3.771 11 O -0.503 6.503 12 C -0.067 4.067 13 N -0.293 5.293 14 C -0.106 4.106 15 C 0.009 3.991 16 H 0.118 0.882 17 C -0.144 4.144 18 C -0.160 4.160 19 C -0.018 4.018 20 N -0.336 5.336 21 C 0.379 3.621 22 O -0.452 6.452 23 C -0.160 4.160 24 C -0.080 4.080 25 O -0.221 6.221 26 C -0.070 4.070 27 C -0.062 4.062 28 O -0.230 6.230 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.246 0.754 43 H 0.168 0.832 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.642 -19.035 -2.574 19.389 hybrid contribution -0.906 0.885 -1.367 1.863 sum 1.736 -18.150 -3.941 18.654 Atomic orbital electron populations 1.69669 1.06868 1.29283 1.50462 1.26021 0.96489 1.02398 0.96361 0.85009 0.77755 0.76718 0.79009 1.19638 1.19786 1.19635 1.19647 0.92779 0.83952 1.49785 0.90049 1.41915 1.09306 1.04734 1.65122 1.20715 0.88250 0.85925 0.82229 1.90497 1.15520 1.87869 1.56441 1.21518 0.93954 0.88066 1.03144 1.60042 1.18543 0.99609 1.51074 1.22997 0.96521 0.88540 1.02548 1.22011 0.94067 0.81503 1.01561 0.88228 1.22586 1.02615 0.97064 0.92116 1.22866 0.96319 0.94232 1.02603 1.22512 0.99752 0.96059 0.83517 1.48281 1.53722 1.17858 1.13762 1.16957 0.78748 0.84474 0.81904 1.90801 1.43524 1.26235 1.84632 1.20148 1.06414 0.99104 0.90372 1.26159 0.96604 0.91617 0.93647 1.86222 1.82661 1.38072 1.15169 1.24076 0.97758 1.00563 0.84606 1.23992 0.97438 0.92499 0.92280 1.86376 1.74799 1.36922 1.24951 0.91391 0.77091 0.92034 0.87414 0.83357 0.93894 0.88731 0.88394 0.89437 0.89658 0.87009 0.90512 0.90339 0.75380 0.83223 0.89160 0.90559 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.33 -18.35 9.68 84.04 0.81 -17.54 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -28.43 5.29 -306.98 -1.62 -30.06 16 10 C 0.44 19.86 7.82 87.66 0.69 20.55 16 11 O -0.62 -32.12 15.78 -3.09 -0.05 -32.17 16 12 C 0.07 2.08 6.16 85.56 0.53 2.61 16 13 N -0.66 -17.88 5.95 -519.40 -3.09 -20.97 16 14 C 0.02 0.51 4.08 86.30 0.35 0.86 16 15 C 0.11 2.06 2.32 45.34 0.11 2.16 16 16 H 0.10 1.78 6.18 -2.39 -0.01 1.76 16 17 C -0.11 -1.55 6.33 31.78 0.20 -1.34 16 18 C -0.12 -1.35 7.08 31.99 0.23 -1.13 16 19 C 0.10 1.70 6.88 86.86 0.60 2.30 16 20 N -0.60 -13.01 3.07 -859.68 -2.64 -15.64 16 21 C 0.59 17.08 7.56 86.36 0.65 17.73 16 22 O -0.57 -20.82 17.23 10.07 0.17 -20.65 16 23 C -0.11 -3.05 6.33 23.42 0.15 -2.90 16 24 C -0.01 -0.35 7.40 66.85 0.49 0.14 16 25 O -0.31 -7.17 10.47 -69.21 -0.72 -7.90 16 26 C 0.00 0.07 7.29 72.17 0.53 0.60 16 27 C 0.01 0.23 7.32 72.17 0.53 0.75 16 28 O -0.32 -8.69 10.29 -71.78 -0.74 -9.43 16 29 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.35 9.98 7.93 -89.69 -0.71 9.26 16 34 H 0.04 1.02 4.62 -2.39 -0.01 1.01 16 35 H 0.09 1.95 7.96 -2.39 -0.02 1.93 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.33 7.73 -2.39 -0.02 1.32 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.36 8.11 -2.38 -0.02 1.34 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.23 4.96 0.94 -29.03 -0.03 4.93 16 43 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 46 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -75.90 372.00 -0.47 -76.36 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.42 Total: 40.57 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 6.33 Total: 24.57 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -7.06 Total: -115.42 kcal Atomic # 8 Polarization: -68.80 SS G_CDS: -1.34 Total: -70.14 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -75.90 -0.47 -76.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698727623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.052 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds