Wall clock time and date at job start Tue Mar 31 2020 23:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48506 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46968 * 299.99204 * 3 2 1 6 6 H 1.48501 * 109.47508 * 59.99634 * 3 2 1 7 7 C 1.38808 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00371 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00068 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47572 * 175.64848 * 11 10 9 13 13 H 1.08999 * 109.70384 * 59.05918 * 12 11 10 14 14 C 1.52769 * 109.50740 * 298.94421 * 12 11 10 15 15 C 1.53043 * 109.38431 * 185.70621 * 14 12 11 16 16 C 1.53039 * 109.53903 * 61.23946 * 15 14 12 17 17 C 1.53202 * 109.31172 * 298.63609 * 16 15 14 18 18 N 1.46923 * 109.59116 * 179.42050 * 12 11 10 19 19 C 1.34783 * 120.62634 * 353.41563 * 18 12 11 20 20 O 1.21545 * 119.99880 * 10.63282 * 19 18 12 21 21 C 1.47885 * 119.99783 * 190.63916 * 19 18 12 22 22 N 1.32842 * 119.71933 * 6.88288 * 21 19 18 23 23 C 1.31373 * 121.68718 * 179.70386 * 22 21 19 24 24 C 1.39001 * 120.93103 * 0.58785 * 23 22 21 25 25 F 1.35101 * 120.33024 * 179.72397 * 24 23 22 26 26 C 1.38724 * 119.34297 * 359.45114 * 24 23 22 27 27 C 1.38843 * 118.44506 * 0.25021 * 26 24 23 28 28 F 1.35097 * 120.47949 * 179.97438 * 27 26 24 29 29 H 0.97005 * 120.00142 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99222 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47452 * 59.99477 * 10 9 7 32 32 H 1.08997 * 109.47407 * 299.99306 * 10 9 7 33 33 H 1.09009 * 109.46926 * 55.64345 * 11 10 9 34 34 H 1.09000 * 109.47159 * 295.64978 * 11 10 9 35 35 H 1.09004 * 109.56377 * 65.67021 * 14 12 11 36 36 H 1.09001 * 109.38753 * 305.63561 * 14 12 11 37 37 H 1.09007 * 109.45604 * 301.21656 * 15 14 12 38 38 H 1.08995 * 109.45970 * 181.26392 * 15 14 12 39 39 H 1.08994 * 109.49742 * 178.68888 * 16 15 14 40 40 H 1.08994 * 109.52263 * 58.60191 * 16 15 14 41 41 H 1.09002 * 109.58345 * 294.84861 * 17 16 15 42 42 H 1.08993 * 109.58239 * 174.41965 * 17 16 15 43 43 H 1.07997 * 119.53572 * 180.31498 * 23 22 21 44 44 H 1.07997 * 120.77692 * 180.27370 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8256 -6.1420 -0.1083 13 1 2.5162 -6.2387 0.7295 14 6 2.6095 -6.1722 -1.4192 15 6 3.2550 -7.5488 -1.5934 16 6 2.1649 -8.6212 -1.6556 17 6 1.3769 -8.6194 -0.3418 18 7 0.8741 -7.2614 -0.0939 19 6 -0.4362 -7.0458 0.1369 20 8 -0.8736 -5.9118 0.1435 21 6 -1.3417 -8.1890 0.3821 22 7 -0.8387 -9.4118 0.5102 23 6 -1.6066 -10.4539 0.7344 24 6 -2.9862 -10.3164 0.8348 25 9 -3.7649 -11.3972 1.0601 26 6 -3.5550 -9.0576 0.7071 27 6 -2.7181 -7.9740 0.4766 28 9 -3.2282 -6.7300 0.3451 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6846 -3.7145 -0.8895 33 1 0.3866 -4.7192 -0.8470 34 1 0.4900 -4.8066 0.9278 35 1 3.3851 -5.4066 -1.3984 36 1 1.9313 -5.9805 -2.2507 37 1 3.9147 -7.7500 -0.7492 38 1 3.8331 -7.5645 -2.5173 39 1 2.6242 -9.5986 -1.8030 40 1 1.4905 -8.4073 -2.4847 41 1 2.0303 -8.9223 0.4765 42 1 0.5383 -9.3114 -0.4179 43 1 -1.1602 -11.4318 0.8378 44 1 -4.6237 -8.9236 0.7855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698914097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:32 Heat of formation + Delta-G solvation = -43.184328 kcal Electronic energy + Delta-G solvation = -29834.680421 eV Core-core repulsion = 25424.810507 eV Total energy + Delta-G solvation = -4409.869914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.71299 -49.33591 -41.21556 -39.77480 -37.41101 -35.16024 -33.59734 -32.73680 -32.54677 -31.26430 -30.45716 -27.80389 -25.85157 -24.69293 -24.25606 -23.89609 -22.44832 -21.22308 -20.63004 -19.80006 -18.72344 -18.53403 -17.41795 -16.86417 -16.82120 -16.39550 -15.99653 -15.90194 -15.47420 -15.29775 -14.97122 -14.84808 -14.51329 -14.40093 -13.94679 -13.83864 -13.54139 -13.38643 -13.13328 -13.05644 -12.91264 -12.85484 -12.55955 -12.03773 -11.40649 -11.31470 -11.14607 -10.86863 -10.81896 -10.76635 -10.47665 -10.41140 -10.30358 -9.90528 -9.76677 -9.56710 -9.46007 -8.96411 -8.74067 -8.44824 -6.75646 -5.62536 -2.90606 -0.18030 0.23457 2.27028 2.69053 3.11717 3.18090 3.44148 3.51004 3.54029 3.55636 3.58566 3.95931 4.01221 4.37273 4.68333 4.76159 4.82732 4.85651 4.91856 5.01173 5.10118 5.12871 5.32350 5.40047 5.54280 5.66760 5.70568 5.75286 5.84575 5.88191 5.98243 6.07869 6.09278 6.22228 6.30870 6.42934 6.43519 6.61093 6.72099 6.83559 7.11732 7.20431 7.38825 7.81412 8.09670 8.56426 9.66914 10.29239 10.64021 11.60459 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.002889 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.005609 B = 9689.011700 C =11411.631212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.017 4.017 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.148 3.852 11 C -0.115 4.115 12 C 0.152 3.848 13 H 0.074 0.926 14 C -0.133 4.133 15 C -0.121 4.121 16 C -0.136 4.136 17 C 0.080 3.920 18 N -0.587 5.587 19 C 0.560 3.440 20 O -0.491 6.491 21 C 0.040 3.960 22 N -0.394 5.394 23 C 0.056 3.944 24 C 0.102 3.898 25 F -0.117 7.117 26 C -0.156 4.156 27 C 0.147 3.853 28 F -0.089 7.089 29 H 0.253 0.747 30 H 0.386 0.614 31 H 0.012 0.988 32 H 0.018 0.982 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.135 0.865 43 H 0.184 0.816 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -29.819 -0.279 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.213 4.213 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.019 3.981 11 C -0.153 4.153 12 C 0.049 3.951 13 H 0.092 0.908 14 C -0.171 4.171 15 C -0.159 4.159 16 C -0.175 4.175 17 C -0.042 4.042 18 N -0.319 5.319 19 C 0.345 3.655 20 O -0.364 6.364 21 C -0.099 4.099 22 N -0.105 5.105 23 C -0.105 4.105 24 C 0.080 3.920 25 F -0.095 7.095 26 C -0.183 4.183 27 C 0.124 3.876 28 F -0.067 7.067 29 H 0.063 0.937 30 H 0.219 0.781 31 H 0.030 0.970 32 H 0.035 0.965 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.200 0.800 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.965 -29.121 -0.339 29.189 hybrid contribution -0.960 0.913 0.105 1.330 sum -2.925 -28.207 -0.234 28.360 Atomic orbital electron populations 1.69697 1.05052 1.25285 1.58057 1.24751 0.95513 0.97605 1.03450 0.86131 0.78716 0.84351 0.77114 1.20634 1.21964 1.21967 1.19288 0.90965 0.84296 1.42092 0.91276 1.42366 1.06076 0.99891 1.89198 1.20810 0.93670 0.86337 0.97236 1.22237 0.97465 0.90918 1.04668 1.21294 0.90042 0.86099 0.97647 0.90783 1.21995 1.00158 0.97252 0.97716 1.21558 0.97548 0.94902 1.01871 1.21973 0.98105 0.99252 0.98140 1.22778 1.01239 0.83758 0.96425 1.47917 1.06004 1.09036 1.68955 1.17622 0.82166 0.86749 0.78973 1.91063 1.75115 1.20655 1.49555 1.21886 0.91311 0.93208 1.03518 1.67934 1.36028 0.97837 1.08662 1.23254 0.88380 0.99783 0.99086 1.18732 0.89942 0.83425 0.99923 1.91592 1.74317 1.52251 1.91327 1.21743 1.02965 0.90389 1.03248 1.18312 0.90888 0.81240 0.97178 1.91724 1.86636 1.36827 1.91504 0.93686 0.78067 0.97022 0.96459 0.90250 0.90344 0.89799 0.91369 0.91877 0.91905 0.91035 0.91895 0.91650 0.84848 0.79956 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.93 13.06 55.49 0.72 -29.21 16 2 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 3 Si 0.91 23.42 29.55 -169.99 -5.02 18.40 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 7 C -0.23 -7.01 9.99 -15.06 -0.15 -7.16 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.73 -20.35 5.60 -59.91 -0.34 -20.69 16 10 C 0.15 3.25 6.05 -4.04 -0.02 3.22 16 11 C -0.12 -2.20 3.24 -26.73 -0.09 -2.28 16 12 C 0.15 2.20 2.99 -67.82 -0.20 2.00 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.13 -1.71 4.86 -26.83 -0.13 -1.84 16 15 C -0.12 -1.19 5.89 -26.69 -0.16 -1.34 16 16 C -0.14 -1.20 6.08 -26.61 -0.16 -1.36 16 17 C 0.08 0.77 5.82 -3.71 -0.02 0.75 16 18 N -0.59 -7.72 2.98 -166.56 -0.50 -8.22 16 19 C 0.56 8.35 7.53 -12.31 -0.09 8.25 16 20 O -0.49 -9.25 10.80 5.33 0.06 -9.20 16 21 C 0.04 0.46 6.59 -82.96 -0.55 -0.09 16 22 N -0.39 -3.43 6.14 -9.70 -0.06 -3.49 16 23 C 0.06 0.34 11.17 -17.46 -0.20 0.14 16 24 C 0.10 0.65 7.35 -39.12 -0.29 0.37 16 25 F -0.12 -0.73 17.28 2.25 0.04 -0.69 16 26 C -0.16 -1.18 10.14 -39.18 -0.40 -1.57 16 27 C 0.15 1.61 7.31 -38.84 -0.28 1.33 16 28 F -0.09 -1.25 15.57 2.25 0.04 -1.21 16 29 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 30 H 0.39 11.50 7.67 -40.82 -0.31 11.19 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.02 0.37 6.37 -51.93 -0.33 0.04 16 33 H 0.08 1.68 6.92 -51.92 -0.36 1.32 16 34 H 0.08 1.65 6.58 -51.93 -0.34 1.31 16 35 H 0.08 1.12 6.67 -51.93 -0.35 0.77 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.14 1.18 4.16 -79.30 -0.33 0.85 16 43 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -35.05 358.55 -8.28 -43.33 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.79 Total: 5.79 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.83 Total: -0.22 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.17 Total: -61.61 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.07 Total: -1.90 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.05 -8.28 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698914097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.148 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds