Wall clock time and date at job start Tue Mar 31 2020 23:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48506 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46968 * 299.99204 * 3 2 1 6 6 H 1.48501 * 109.47508 * 59.99634 * 3 2 1 7 7 C 1.38808 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00371 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00068 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47193 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47572 * 175.64848 * 11 10 9 13 13 H 1.08999 * 109.70384 * 59.05918 * 12 11 10 14 14 C 1.52769 * 109.50740 * 298.94421 * 12 11 10 15 15 C 1.53043 * 109.38431 * 185.70621 * 14 12 11 16 16 C 1.53039 * 109.53903 * 61.23946 * 15 14 12 17 17 C 1.53202 * 109.31172 * 298.63609 * 16 15 14 18 18 N 1.46923 * 109.59116 * 179.42050 * 12 11 10 19 19 C 1.34783 * 120.62634 * 353.41563 * 18 12 11 20 20 O 1.21545 * 119.99880 * 10.63282 * 19 18 12 21 21 C 1.47885 * 119.99783 * 190.63916 * 19 18 12 22 22 N 1.32842 * 119.71933 * 6.88288 * 21 19 18 23 23 C 1.31373 * 121.68718 * 179.70386 * 22 21 19 24 24 C 1.39001 * 120.93103 * 0.58785 * 23 22 21 25 25 F 1.35101 * 120.33024 * 179.72397 * 24 23 22 26 26 C 1.38724 * 119.34297 * 359.45114 * 24 23 22 27 27 C 1.38843 * 118.44506 * 0.25021 * 26 24 23 28 28 F 1.35097 * 120.47949 * 179.97438 * 27 26 24 29 29 H 0.97005 * 120.00142 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99222 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47452 * 59.99477 * 10 9 7 32 32 H 1.08997 * 109.47407 * 299.99306 * 10 9 7 33 33 H 1.09009 * 109.46926 * 55.64345 * 11 10 9 34 34 H 1.09000 * 109.47159 * 295.64978 * 11 10 9 35 35 H 1.09004 * 109.56377 * 65.67021 * 14 12 11 36 36 H 1.09001 * 109.38753 * 305.63561 * 14 12 11 37 37 H 1.09007 * 109.45604 * 301.21656 * 15 14 12 38 38 H 1.08995 * 109.45970 * 181.26392 * 15 14 12 39 39 H 1.08994 * 109.49742 * 178.68888 * 16 15 14 40 40 H 1.08994 * 109.52263 * 58.60191 * 16 15 14 41 41 H 1.09002 * 109.58345 * 294.84861 * 17 16 15 42 42 H 1.08993 * 109.58239 * 174.41965 * 17 16 15 43 43 H 1.07997 * 119.53572 * 180.31498 * 23 22 21 44 44 H 1.07997 * 120.77692 * 180.27370 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8256 -6.1420 -0.1083 13 1 2.5162 -6.2387 0.7295 14 6 2.6095 -6.1722 -1.4192 15 6 3.2550 -7.5488 -1.5934 16 6 2.1649 -8.6212 -1.6556 17 6 1.3769 -8.6194 -0.3418 18 7 0.8741 -7.2614 -0.0939 19 6 -0.4362 -7.0458 0.1369 20 8 -0.8736 -5.9118 0.1435 21 6 -1.3417 -8.1890 0.3821 22 7 -0.8387 -9.4118 0.5102 23 6 -1.6066 -10.4539 0.7344 24 6 -2.9862 -10.3164 0.8348 25 9 -3.7649 -11.3972 1.0601 26 6 -3.5550 -9.0576 0.7071 27 6 -2.7181 -7.9740 0.4766 28 9 -3.2282 -6.7300 0.3451 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6846 -3.7145 -0.8895 33 1 0.3866 -4.7192 -0.8470 34 1 0.4900 -4.8066 0.9278 35 1 3.3851 -5.4066 -1.3984 36 1 1.9313 -5.9805 -2.2507 37 1 3.9147 -7.7500 -0.7492 38 1 3.8331 -7.5645 -2.5173 39 1 2.6242 -9.5986 -1.8030 40 1 1.4905 -8.4073 -2.4847 41 1 2.0303 -8.9223 0.4765 42 1 0.5383 -9.3114 -0.4179 43 1 -1.1602 -11.4318 0.8378 44 1 -4.6237 -8.9236 0.7855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698914097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:31 Heat of formation + Delta-G solvation = -66.159812 kcal Electronic energy + Delta-G solvation = -29835.676713 eV Core-core repulsion = 25424.810507 eV Total energy + Delta-G solvation = -4410.866206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.26903 -50.24121 -42.12769 -40.66644 -38.50575 -36.97609 -34.80315 -34.08420 -33.39897 -32.51960 -31.80821 -29.29244 -27.00948 -25.74391 -25.24326 -25.10081 -23.93036 -22.31665 -22.01981 -20.74685 -19.47049 -19.33815 -19.08314 -18.16562 -17.58426 -17.21109 -17.03397 -16.76185 -16.62173 -16.38224 -16.24701 -15.77495 -15.63835 -15.53112 -15.26819 -15.14898 -14.75976 -14.66920 -14.32461 -14.18350 -14.11620 -13.81050 -13.63969 -13.31305 -12.96651 -12.84681 -12.72350 -12.34546 -12.10258 -12.03647 -11.91004 -11.77307 -11.67806 -11.40778 -11.13454 -10.94503 -10.69330 -10.20670 -10.11763 -9.52838 -9.01885 -7.95310 -5.26365 -0.92004 -0.39301 1.41762 1.44245 1.47468 1.57627 1.72949 2.30840 2.44231 2.54827 2.73601 2.81134 3.26490 3.36996 3.38035 3.65010 3.76737 3.87091 3.98925 4.14885 4.18594 4.20852 4.29900 4.34108 4.46059 4.49604 4.58874 4.63592 4.72986 4.78896 4.91341 4.99538 5.03952 5.11190 5.18653 5.21364 5.34269 5.39128 5.43283 5.49306 5.53037 5.74427 6.13791 6.25589 6.36914 7.01397 7.29977 8.06868 8.31288 9.29165 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.002889 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.005609 B = 9689.011700 C =11411.631212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.084 4.084 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.148 3.852 11 C -0.092 4.092 12 C 0.156 3.844 13 H 0.088 0.912 14 C -0.130 4.130 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.076 3.924 18 N -0.584 5.584 19 C 0.549 3.451 20 O -0.548 6.548 21 C 0.022 3.978 22 N -0.394 5.394 23 C 0.079 3.921 24 C 0.118 3.882 25 F -0.108 7.108 26 C -0.145 4.145 27 C 0.120 3.880 28 F -0.118 7.118 29 H 0.251 0.749 30 H 0.369 0.631 31 H 0.019 0.981 32 H 0.030 0.970 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.050 0.950 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.229 0.771 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -33.360 -0.123 33.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.021 3.979 11 C -0.130 4.130 12 C 0.053 3.947 13 H 0.106 0.894 14 C -0.168 4.168 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.044 4.044 18 N -0.316 5.316 19 C 0.336 3.664 20 O -0.426 6.426 21 C -0.115 4.115 22 N -0.105 5.105 23 C -0.083 4.083 24 C 0.096 3.904 25 F -0.086 7.086 26 C -0.172 4.172 27 C 0.097 3.903 28 F -0.097 7.097 29 H 0.060 0.940 30 H 0.200 0.800 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.163 0.837 43 H 0.245 0.755 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.128 -32.724 -0.192 32.725 hybrid contribution -1.565 1.791 0.087 2.380 sum -1.693 -30.934 -0.105 30.980 Atomic orbital electron populations 1.69893 1.06977 1.26038 1.59602 1.25741 0.96492 1.01619 1.03672 0.84945 0.78232 0.79064 0.76731 1.18558 1.21832 1.21884 1.19753 0.91608 0.85241 1.41168 0.90211 1.42660 1.05581 1.01570 1.89353 1.20994 0.94043 0.85195 0.97688 1.21903 0.96252 0.92844 1.02010 1.21151 0.89943 0.84365 0.99279 0.89379 1.21944 0.99408 0.99717 0.95745 1.21546 0.97883 0.92693 1.03167 1.21981 0.97490 1.00525 0.97017 1.23095 1.02116 0.81672 0.97544 1.48062 1.05359 1.10084 1.68076 1.18185 0.82941 0.87177 0.78134 1.91031 1.76227 1.23182 1.52180 1.21327 0.90783 0.93381 1.05979 1.67872 1.36257 0.97151 1.09217 1.23961 0.88060 1.00405 0.95917 1.18707 0.90220 0.82949 0.98494 1.91630 1.74234 1.51694 1.91012 1.21903 1.03668 0.89808 1.01807 1.18590 0.91338 0.81107 0.99266 1.91646 1.86957 1.38900 1.92156 0.94023 0.79991 0.96325 0.95223 0.93230 0.93032 0.90378 0.93417 0.90374 0.90623 0.87706 0.93154 0.89952 0.83692 0.75475 0.79357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.89 13.06 21.65 0.28 -64.61 16 2 C -0.08 -5.19 5.50 84.86 0.47 -4.72 16 3 Si 0.98 48.92 29.55 68.60 2.03 50.95 16 4 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.25 -15.00 9.99 84.03 0.84 -14.16 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.75 -43.70 5.60 -343.46 -1.92 -45.63 16 10 C 0.15 6.75 6.05 86.38 0.52 7.27 16 11 C -0.09 -3.78 3.24 30.59 0.10 -3.68 16 12 C 0.16 4.62 2.99 44.83 0.13 4.75 16 13 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 14 C -0.13 -3.33 4.86 30.53 0.15 -3.18 16 15 C -0.12 -1.97 5.89 30.62 0.18 -1.79 16 16 C -0.13 -1.95 6.08 30.67 0.19 -1.76 16 17 C 0.08 1.29 5.82 86.37 0.50 1.80 16 18 N -0.58 -15.52 2.98 -799.15 -2.38 -17.90 16 19 C 0.55 17.40 7.53 86.80 0.65 18.05 16 20 O -0.55 -22.97 10.80 -3.86 -0.04 -23.01 16 21 C 0.02 0.51 6.59 41.88 0.28 0.79 16 22 N -0.39 -5.97 6.14 -184.61 -1.13 -7.10 16 23 C 0.08 0.63 11.17 84.94 0.95 1.58 16 24 C 0.12 1.13 7.35 22.57 0.17 1.30 16 25 F -0.11 -0.92 17.28 44.97 0.78 -0.15 16 26 C -0.15 -1.99 10.14 22.53 0.23 -1.76 16 27 C 0.12 2.74 7.31 22.75 0.17 2.90 16 28 F -0.12 -3.67 15.57 44.97 0.70 -2.97 16 29 H 0.25 16.00 8.31 -92.70 -0.77 15.23 16 30 H 0.37 23.54 7.67 -92.71 -0.71 22.83 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 1.30 6.37 -2.39 -0.02 1.28 16 33 H 0.05 2.32 6.92 -2.38 -0.02 2.30 16 34 H 0.05 2.38 6.58 -2.39 -0.02 2.37 16 35 H 0.08 2.06 6.67 -2.38 -0.02 2.04 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.15 2.16 4.16 -56.43 -0.23 1.92 16 43 H 0.23 -0.24 8.06 -2.91 -0.02 -0.26 16 44 H 0.19 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -81.98 358.55 3.94 -78.04 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.12 Total: 24.98 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.52 Total: 7.39 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -5.15 Total: -135.24 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 1.48 Total: -3.12 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -81.98 3.94 -78.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698914097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.880 kcal (2) G-P(sol) polarization free energy of solvation -81.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds