Wall clock time and date at job start Tue Mar 31 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35628 * 125.67635 * 2 1 4 4 C 1.35524 * 108.84784 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 126.06924 * 180.02562 * 4 3 2 6 6 C 1.39885 * 107.85183 * 359.78121 * 4 3 2 7 7 C 1.37637 * 125.67081 * 180.02562 * 2 1 3 8 8 C 1.46670 * 126.22580 * 359.92948 * 7 2 1 9 9 O 1.21690 * 120.00068 * 5.16479 * 8 7 2 10 10 N 1.34773 * 119.99621 * 185.16889 * 8 7 2 11 11 C 1.46506 * 119.99781 * 174.41212 * 10 8 7 12 12 H 1.08994 * 109.47124 * 34.99383 * 11 10 8 13 13 C 1.52999 * 109.46622 * 274.99451 * 11 10 8 14 14 C 1.52996 * 109.47493 * 299.99929 * 13 11 10 15 15 C 1.52998 * 109.47310 * 300.00426 * 14 13 11 16 16 C 1.52999 * 109.47518 * 59.99580 * 15 14 13 17 17 C 1.53002 * 109.47338 * 154.99730 * 11 10 8 18 18 H 1.08991 * 109.47224 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47189 * 299.99993 * 17 11 10 20 20 N 1.46496 * 109.46894 * 185.00129 * 19 17 11 21 21 C 1.36940 * 119.99672 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99985 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99953 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47119 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47406 * 120.00105 * 25 23 21 28 28 H 1.48506 * 109.46791 * 239.99905 * 25 23 21 29 29 H 1.09001 * 109.47193 * 270.63616 * 1 2 3 30 30 H 1.08999 * 109.46974 * 30.63339 * 1 2 3 31 31 H 1.08995 * 109.47626 * 150.63149 * 1 2 3 32 32 H 1.07994 * 125.57225 * 0.02562 * 3 2 1 33 33 H 1.08000 * 126.45251 * 180.22606 * 6 4 3 34 34 H 0.97002 * 120.00875 * 354.40404 * 10 8 7 35 35 H 1.09001 * 109.46937 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47099 * 60.00365 * 13 11 10 37 37 H 1.09000 * 109.47365 * 59.99834 * 14 13 11 38 38 H 1.09005 * 109.47645 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.47167 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.46885 * 299.99719 * 15 14 13 41 41 H 1.08992 * 109.47571 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.46929 * 60.00165 * 16 15 14 43 43 H 1.09003 * 109.46505 * 304.99964 * 19 17 11 44 44 H 1.08999 * 109.46904 * 64.99676 * 19 17 11 45 45 H 0.96993 * 120.00579 * 359.97438 * 20 19 17 46 46 H 0.97003 * 119.99833 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7094 -0.0006 5 17 4.9378 1.7566 -0.0002 6 6 3.5782 -0.6892 0.0041 7 6 2.2676 -1.1181 -0.0005 8 6 1.8119 -2.5122 0.0003 9 8 0.6251 -2.7645 -0.0933 10 7 2.7075 -3.5138 0.1049 11 6 2.2464 -4.8989 0.2290 12 1 1.3401 -5.0343 -0.3611 13 6 1.9495 -5.2077 1.6978 14 6 3.2216 -5.0176 2.5262 15 6 4.3092 -5.9649 2.0156 16 6 4.6061 -5.6561 0.5468 17 6 3.3338 -5.8463 -0.2816 18 1 2.9909 -6.8767 -0.1888 19 6 3.6308 -5.5374 -1.7504 20 7 4.5839 -6.5196 -2.2729 21 6 5.0003 -6.4439 -3.5752 22 1 4.6258 -5.6603 -4.2173 23 6 5.9039 -7.3742 -4.0702 24 7 6.3607 -8.3288 -3.2876 25 14 6.4725 -7.2705 -5.8466 26 1 5.8164 -6.1150 -6.5096 27 1 7.9463 -7.0926 -5.8850 28 1 6.1062 -8.5219 -6.5573 29 1 -0.3633 0.0114 1.0276 30 1 -0.3633 0.8842 -0.5236 31 1 -0.3634 -0.8955 -0.5040 32 1 1.9089 2.1244 0.0004 33 1 4.4582 -1.3153 0.0084 34 1 3.6575 -3.3179 0.0978 35 1 1.6068 -6.2383 1.7903 36 1 1.1747 -4.5328 2.0616 37 1 3.5649 -3.9872 2.4338 38 1 3.0103 -5.2380 3.5726 39 1 5.2153 -5.8298 2.6061 40 1 3.9660 -6.9954 2.1080 41 1 5.3805 -6.3312 0.1829 42 1 4.9492 -4.6256 0.4544 43 1 2.7064 -5.5863 -2.3260 44 1 4.0575 -4.5377 -1.8324 45 1 4.9200 -7.2235 -1.6964 46 1 6.9918 -8.9791 -3.6336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699480522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:32 Heat of formation + Delta-G solvation = 1.332833 kcal Electronic energy + Delta-G solvation = -27749.602990 eV Core-core repulsion = 23893.460165 eV Total energy + Delta-G solvation = -3856.142825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71717 -40.01718 -37.96736 -36.56169 -34.66111 -33.96893 -32.79034 -31.91623 -30.48072 -29.63627 -28.73916 -26.73606 -25.24598 -23.47150 -22.91963 -22.08273 -20.98229 -20.66478 -19.95277 -18.92330 -18.27716 -17.10290 -16.22870 -15.99396 -15.59940 -15.24637 -14.77053 -14.56224 -14.54520 -14.15973 -13.86702 -13.85568 -13.53886 -13.29247 -13.19674 -13.08779 -13.05079 -12.75892 -12.46444 -12.11395 -11.97787 -11.70878 -11.62364 -11.42004 -11.04038 -10.89494 -10.87901 -10.73026 -10.35528 -10.17843 -10.00950 -9.97032 -9.86281 -9.62232 -9.02282 -8.91013 -8.84825 -8.44909 -6.90319 -5.75834 -3.03868 1.20457 1.90438 2.21939 2.57802 3.23711 3.34731 3.44364 3.50585 3.52448 4.51353 4.56803 4.60841 4.64029 4.84371 4.88424 4.92068 4.93602 5.00126 5.24394 5.27636 5.32684 5.40089 5.56762 5.60010 5.62249 5.65899 5.71744 5.74404 5.81962 6.04464 6.10219 6.15411 6.19659 6.24456 6.26979 6.37250 6.48667 6.50302 6.56122 6.68598 6.75715 6.81373 6.88026 7.49913 7.72543 8.14500 8.43413 9.54948 10.12431 10.47265 11.47124 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009305 B = 0.003279 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.490628 B = 8537.288035 C = 9926.312801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.403 5.403 3 C 0.028 3.972 4 C -0.121 4.121 5 Cl -0.050 7.050 6 C -0.128 4.128 7 C -0.032 4.032 8 C 0.591 3.409 9 O -0.551 6.551 10 N -0.699 5.699 11 C 0.156 3.844 12 H 0.091 0.909 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.087 0.913 19 C 0.160 3.840 20 N -0.731 5.731 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.177 0.823 33 H 0.154 0.846 34 H 0.404 0.596 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 17.398 13.674 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.076 5.076 3 C -0.109 4.109 4 C -0.154 4.154 5 Cl -0.022 7.022 6 C -0.154 4.154 7 C -0.146 4.146 8 C 0.378 3.622 9 O -0.431 6.431 10 N -0.351 5.351 11 C 0.052 3.948 12 H 0.109 0.891 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.158 4.158 16 C -0.149 4.149 17 C -0.121 4.121 18 H 0.105 0.895 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.194 0.806 33 H 0.172 0.828 34 H 0.241 0.759 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.870 17.305 13.447 24.463 hybrid contribution 1.119 0.109 -0.860 1.416 sum -9.750 17.415 12.587 23.596 Atomic orbital electron populations 1.22385 0.75167 1.05894 1.04156 1.43766 1.07112 1.04498 1.52216 1.21694 0.88968 0.92156 1.08055 1.19892 0.88012 0.91386 1.16071 1.98331 1.40663 1.65507 1.97673 1.21268 0.95437 0.93311 1.05416 1.20102 0.89548 0.88220 1.16756 1.16826 0.85790 0.83191 0.76395 1.90759 1.16273 1.84674 1.51399 1.45787 1.09857 1.06306 1.73113 1.21020 0.98320 0.79333 0.96129 0.89104 1.21910 0.97797 1.02027 0.94877 1.21502 0.95408 0.99880 0.98631 1.21585 0.98195 0.99516 0.96528 1.21542 0.97860 1.01790 0.93684 1.21638 0.94618 0.99325 0.96512 0.89480 1.20646 0.93060 0.93154 0.89952 1.42362 1.51301 1.32864 1.10975 1.19269 1.19843 1.09909 0.87816 0.91255 1.24711 1.00210 0.97973 0.98036 1.69662 1.35742 1.17930 1.34908 0.86144 0.78214 0.77189 0.84826 1.20587 1.21873 1.21905 0.90366 0.89711 0.87112 0.80584 0.82832 0.75902 0.90829 0.91918 0.92195 0.92456 0.92190 0.91885 0.90156 0.92675 0.96445 0.96367 0.78209 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.66 59.85 0.64 1.14 16 2 N -0.40 -4.15 3.16 -120.19 -0.38 -4.53 16 3 C 0.03 0.26 11.36 -16.84 -0.19 0.07 16 4 C -0.12 -1.30 6.66 -39.94 -0.27 -1.56 16 5 Cl -0.05 -0.51 29.30 -51.86 -1.52 -2.03 16 6 C -0.13 -1.46 10.35 -39.09 -0.40 -1.87 16 7 C -0.03 -0.39 6.89 -81.98 -0.56 -0.96 16 8 C 0.59 7.99 7.74 -12.86 -0.10 7.89 16 9 O -0.55 -8.58 14.26 5.20 0.07 -8.51 16 10 N -0.70 -8.80 3.60 -55.12 -0.20 -9.00 16 11 C 0.16 2.06 2.28 -67.93 -0.15 1.91 16 12 H 0.09 1.34 7.50 -51.93 -0.39 0.95 16 13 C -0.13 -1.45 5.60 -26.73 -0.15 -1.60 16 14 C -0.12 -1.23 5.77 -26.73 -0.15 -1.39 16 15 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 16 C -0.11 -1.56 4.91 -26.73 -0.13 -1.69 16 17 C -0.10 -1.53 2.02 -90.61 -0.18 -1.71 16 18 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 19 C 0.16 3.12 5.42 -4.04 -0.02 3.10 16 20 N -0.73 -18.01 5.33 -59.91 -0.32 -18.33 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 25 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.11 1.09 6.18 -51.93 -0.32 0.77 16 32 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.15 1.58 7.45 -52.49 -0.39 1.18 16 34 H 0.40 4.75 5.57 -40.82 -0.23 4.52 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.35 7.18 -51.93 -0.37 0.98 16 42 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.36 7.61 -51.93 -0.40 -0.03 16 45 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -32.08 380.56 -9.88 -41.96 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.88 Total: 9.94 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.09 Total: -5.46 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.17 Total: -59.10 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.52 Total: -2.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.08 -9.88 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699480522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.290 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds