Wall clock time and date at job start Tue Mar 31 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35628 * 125.67635 * 2 1 4 4 C 1.35524 * 108.84784 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 126.06924 * 180.02562 * 4 3 2 6 6 C 1.39885 * 107.85183 * 359.78121 * 4 3 2 7 7 C 1.37637 * 125.67081 * 180.02562 * 2 1 3 8 8 C 1.46670 * 126.22580 * 359.92948 * 7 2 1 9 9 O 1.21690 * 120.00068 * 5.16479 * 8 7 2 10 10 N 1.34773 * 119.99621 * 185.16889 * 8 7 2 11 11 C 1.46506 * 119.99781 * 174.41212 * 10 8 7 12 12 H 1.08994 * 109.47124 * 34.99383 * 11 10 8 13 13 C 1.52999 * 109.46622 * 274.99451 * 11 10 8 14 14 C 1.52996 * 109.47493 * 299.99929 * 13 11 10 15 15 C 1.52998 * 109.47310 * 300.00426 * 14 13 11 16 16 C 1.52999 * 109.47518 * 59.99580 * 15 14 13 17 17 C 1.53002 * 109.47338 * 154.99730 * 11 10 8 18 18 H 1.08991 * 109.47224 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47189 * 299.99993 * 17 11 10 20 20 N 1.46496 * 109.46894 * 185.00129 * 19 17 11 21 21 C 1.36940 * 119.99672 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99985 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99953 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99917 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47119 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47406 * 120.00105 * 25 23 21 28 28 H 1.48506 * 109.46791 * 239.99905 * 25 23 21 29 29 H 1.09001 * 109.47193 * 270.63616 * 1 2 3 30 30 H 1.08999 * 109.46974 * 30.63339 * 1 2 3 31 31 H 1.08995 * 109.47626 * 150.63149 * 1 2 3 32 32 H 1.07994 * 125.57225 * 0.02562 * 3 2 1 33 33 H 1.08000 * 126.45251 * 180.22606 * 6 4 3 34 34 H 0.97002 * 120.00875 * 354.40404 * 10 8 7 35 35 H 1.09001 * 109.46937 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47099 * 60.00365 * 13 11 10 37 37 H 1.09000 * 109.47365 * 59.99834 * 14 13 11 38 38 H 1.09005 * 109.47645 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.47167 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.46885 * 299.99719 * 15 14 13 41 41 H 1.08992 * 109.47571 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.46929 * 60.00165 * 16 15 14 43 43 H 1.09003 * 109.46505 * 304.99964 * 19 17 11 44 44 H 1.08999 * 109.46904 * 64.99676 * 19 17 11 45 45 H 0.96993 * 120.00579 * 359.97438 * 20 19 17 46 46 H 0.97003 * 119.99833 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7094 -0.0006 5 17 4.9378 1.7566 -0.0002 6 6 3.5782 -0.6892 0.0041 7 6 2.2676 -1.1181 -0.0005 8 6 1.8119 -2.5122 0.0003 9 8 0.6251 -2.7645 -0.0933 10 7 2.7075 -3.5138 0.1049 11 6 2.2464 -4.8989 0.2290 12 1 1.3401 -5.0343 -0.3611 13 6 1.9495 -5.2077 1.6978 14 6 3.2216 -5.0176 2.5262 15 6 4.3092 -5.9649 2.0156 16 6 4.6061 -5.6561 0.5468 17 6 3.3338 -5.8463 -0.2816 18 1 2.9909 -6.8767 -0.1888 19 6 3.6308 -5.5374 -1.7504 20 7 4.5839 -6.5196 -2.2729 21 6 5.0003 -6.4439 -3.5752 22 1 4.6258 -5.6603 -4.2173 23 6 5.9039 -7.3742 -4.0702 24 7 6.3607 -8.3288 -3.2876 25 14 6.4725 -7.2705 -5.8466 26 1 5.8164 -6.1150 -6.5096 27 1 7.9463 -7.0926 -5.8850 28 1 6.1062 -8.5219 -6.5573 29 1 -0.3633 0.0114 1.0276 30 1 -0.3633 0.8842 -0.5236 31 1 -0.3634 -0.8955 -0.5040 32 1 1.9089 2.1244 0.0004 33 1 4.4582 -1.3153 0.0084 34 1 3.6575 -3.3179 0.0978 35 1 1.6068 -6.2383 1.7903 36 1 1.1747 -4.5328 2.0616 37 1 3.5649 -3.9872 2.4338 38 1 3.0103 -5.2380 3.5726 39 1 5.2153 -5.8298 2.6061 40 1 3.9660 -6.9954 2.1080 41 1 5.3805 -6.3312 0.1829 42 1 4.9492 -4.6256 0.4544 43 1 2.7064 -5.5863 -2.3260 44 1 4.0575 -4.5377 -1.8324 45 1 4.9200 -7.2235 -1.6964 46 1 6.9918 -8.9791 -3.6336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699480522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:31 Heat of formation + Delta-G solvation = -16.891743 kcal Electronic energy + Delta-G solvation = -27750.393267 eV Core-core repulsion = 23893.460165 eV Total energy + Delta-G solvation = -3856.933102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54846 -41.08715 -39.08790 -37.34753 -36.45876 -34.95948 -33.75066 -33.54121 -31.45495 -31.23127 -29.73478 -27.42444 -26.94098 -24.68506 -24.41725 -23.14470 -22.02534 -21.75885 -20.92499 -19.98260 -19.37309 -18.90005 -17.20896 -16.93457 -16.67110 -16.57816 -16.15242 -15.84217 -15.48876 -15.24649 -15.07185 -14.96878 -14.85993 -14.64868 -14.51742 -14.09946 -13.90689 -13.77432 -13.42199 -13.19618 -13.10509 -12.97422 -12.85639 -12.72933 -12.57833 -12.39678 -12.08654 -11.91577 -11.84936 -11.83926 -11.40551 -11.19819 -11.05883 -11.01972 -10.85359 -10.08165 -9.72445 -9.26077 -8.98143 -7.95184 -5.23063 0.32835 1.14204 1.42366 1.47060 1.47240 1.57343 1.72978 2.25137 2.44184 2.55543 3.38444 3.54474 3.70717 3.79730 3.85310 3.90369 4.02287 4.09727 4.23822 4.24636 4.38940 4.42885 4.49039 4.49775 4.53863 4.58644 4.67133 4.72965 4.76265 4.91287 4.92540 5.02820 5.09154 5.17774 5.28020 5.32187 5.35019 5.36139 5.47278 5.48520 5.53638 5.61269 5.70266 6.04226 6.27589 6.47609 7.11791 7.34705 8.09932 8.34774 9.28237 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009305 B = 0.003279 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.490628 B = 8537.288035 C = 9926.312801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.405 5.405 3 C 0.049 3.951 4 C -0.142 4.142 5 Cl -0.048 7.048 6 C -0.130 4.130 7 C -0.060 4.060 8 C 0.590 3.410 9 O -0.577 6.577 10 N -0.696 5.696 11 C 0.164 3.836 12 H 0.073 0.927 13 C -0.120 4.120 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.088 4.088 18 H 0.081 0.919 19 C 0.161 3.839 20 N -0.739 5.739 21 C -0.245 4.245 22 H 0.069 0.931 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.969 3.031 26 H -0.270 1.270 27 H -0.291 1.291 28 H -0.293 1.293 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.213 0.787 33 H 0.157 0.843 34 H 0.408 0.592 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.004 0.996 44 H 0.021 0.979 45 H 0.377 0.623 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 19.321 14.498 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.078 5.078 3 C -0.089 4.089 4 C -0.175 4.175 5 Cl -0.020 7.020 6 C -0.157 4.157 7 C -0.173 4.173 8 C 0.378 3.622 9 O -0.459 6.459 10 N -0.347 5.347 11 C 0.060 3.940 12 H 0.091 0.909 13 C -0.159 4.159 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.107 4.107 18 H 0.100 0.900 19 C 0.035 3.965 20 N -0.382 5.382 21 C -0.377 4.377 22 H 0.087 0.913 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.798 3.202 26 H -0.195 1.195 27 H -0.218 1.218 28 H -0.220 1.220 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.175 0.825 34 H 0.246 0.754 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.022 0.978 44 H 0.039 0.961 45 H 0.210 0.790 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.360 19.250 14.280 26.524 hybrid contribution 1.227 -0.405 -1.125 1.713 sum -10.133 18.845 13.155 25.117 Atomic orbital electron populations 1.22520 0.73843 1.06286 1.05100 1.44014 1.08006 1.04200 1.51547 1.22263 0.88304 0.93198 1.05169 1.20032 0.88837 0.91197 1.17385 1.98329 1.40694 1.65238 1.97735 1.21422 0.95397 0.94050 1.04783 1.19928 0.90233 0.88016 1.19156 1.17038 0.85420 0.83914 0.75781 1.90744 1.17257 1.85168 1.52744 1.45726 1.10030 1.05960 1.72994 1.20855 0.96586 0.79292 0.97312 0.90860 1.21852 0.98358 1.02466 0.93215 1.21456 0.94231 0.99643 0.99348 1.21529 0.99209 0.99878 0.94499 1.21463 0.96145 1.01448 0.95310 1.21464 0.95941 0.99564 0.93753 0.90028 1.20741 0.91159 0.92036 0.92591 1.42515 1.51985 1.33611 1.10131 1.19604 1.19420 1.09536 0.89127 0.91309 1.25475 1.00846 0.98010 1.01927 1.69802 1.36531 1.18730 1.36566 0.85146 0.77527 0.77226 0.80297 1.19485 1.21788 1.21984 0.89213 0.86478 0.89461 0.77071 0.82492 0.75415 0.90017 0.92010 0.91993 0.90562 0.90978 0.91793 0.93213 0.91933 0.97779 0.96122 0.79046 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.66 127.77 1.36 2.22 16 2 N -0.41 -7.63 3.16 -534.16 -1.69 -9.32 16 3 C 0.05 0.77 11.36 83.48 0.95 1.72 16 4 C -0.14 -2.80 6.66 22.04 0.15 -2.66 16 5 Cl -0.05 -0.91 29.30 -2.72 -0.08 -0.99 16 6 C -0.13 -2.84 10.35 22.59 0.23 -2.61 16 7 C -0.06 -1.40 6.89 40.35 0.28 -1.13 16 8 C 0.59 15.91 7.74 86.45 0.67 16.58 16 9 O -0.58 -18.15 14.26 -4.32 -0.06 -18.21 16 10 N -0.70 -17.40 3.60 -446.51 -1.61 -19.00 16 11 C 0.16 4.32 2.28 44.99 0.10 4.42 16 12 H 0.07 2.21 7.50 -2.39 -0.02 2.19 16 13 C -0.12 -2.59 5.60 30.59 0.17 -2.42 16 14 C -0.11 -2.07 5.77 30.59 0.18 -1.89 16 15 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 16 C -0.11 -2.95 4.91 30.60 0.15 -2.80 16 17 C -0.09 -2.68 2.02 -10.79 -0.02 -2.70 16 18 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 19 C 0.16 6.45 5.42 86.38 0.47 6.92 16 20 N -0.74 -37.33 5.33 -343.45 -1.83 -39.16 16 21 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 22 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 24 N -0.97 -58.75 13.06 21.65 0.28 -58.46 16 25 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.68 6.18 -2.39 -0.01 1.67 16 32 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.16 3.14 7.45 -2.91 -0.02 3.12 16 34 H 0.41 9.46 5.57 -92.71 -0.52 8.94 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.71 7.18 -2.39 -0.02 1.69 16 42 H 0.06 1.63 6.51 -2.39 -0.02 1.61 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.02 0.83 7.61 -2.39 -0.02 0.81 16 45 H 0.38 19.94 6.85 -92.71 -0.63 19.31 16 46 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -69.47 380.56 3.07 -66.40 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.15 Total: 33.35 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 6.17 Total: -3.18 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -4.85 Total: -125.95 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.06 Total: -18.21 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -69.47 3.07 -66.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699480522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.510 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds