Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35634 * 125.67833 * 2 1 4 4 C 1.35512 * 108.85434 * 180.29679 * 3 2 1 5 5 Cl 1.73600 * 126.07453 * 179.71215 * 4 3 2 6 6 C 1.39892 * 107.84784 * 359.73130 * 4 3 2 7 7 C 1.37639 * 125.67946 * 179.83967 * 2 1 3 8 8 C 1.46675 * 126.21936 * 359.96784 * 7 2 1 9 9 O 1.21698 * 119.99700 * 4.40777 * 8 7 2 10 10 N 1.34773 * 119.99859 * 184.40690 * 8 7 2 11 11 C 1.46498 * 120.00001 * 174.41130 * 10 8 7 12 12 H 1.09002 * 109.47452 * 34.99864 * 11 10 8 13 13 C 1.53001 * 109.47178 * 275.00130 * 11 10 8 14 14 C 1.53003 * 109.47240 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.46979 * 59.99833 * 14 13 11 16 16 C 1.52993 * 109.47392 * 299.99925 * 15 14 13 17 17 C 1.52999 * 109.47267 * 60.00305 * 16 15 14 18 18 H 1.09001 * 109.46974 * 59.99824 * 17 16 15 19 19 C 1.53001 * 109.47510 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.46996 * 295.00239 * 19 17 16 21 21 C 1.36936 * 119.99471 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00816 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99531 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00098 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99836 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47322 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47131 * 119.99755 * 25 23 21 28 28 H 1.48500 * 109.46981 * 239.99630 * 25 23 21 29 29 H 1.09004 * 109.46812 * 270.88130 * 1 2 3 30 30 H 1.08998 * 109.47225 * 30.87535 * 1 2 3 31 31 H 1.08997 * 109.47010 * 150.87863 * 1 2 3 32 32 H 1.07997 * 125.56825 * 359.97438 * 3 2 1 33 33 H 1.08011 * 126.44874 * 180.02562 * 6 4 3 34 34 H 0.97003 * 120.00194 * 354.41181 * 10 8 7 35 35 H 1.09001 * 109.47146 * 299.99874 * 13 11 10 36 36 H 1.09002 * 109.47389 * 59.99938 * 13 11 10 37 37 H 1.09000 * 109.46723 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46703 * 299.99482 * 14 13 11 39 39 H 1.09010 * 109.47152 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47690 * 60.00253 * 15 14 13 41 41 H 1.09001 * 109.47267 * 300.00309 * 16 15 14 42 42 H 1.09002 * 109.47511 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.46724 * 54.99925 * 19 17 16 44 44 H 1.08997 * 109.47306 * 174.99663 * 19 17 16 45 45 H 0.96996 * 119.99999 * 359.97438 * 20 19 17 46 46 H 0.97003 * 119.99966 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1018 0.0000 4 6 3.5531 0.7096 -0.0066 5 17 4.9377 1.7568 -0.0164 6 6 3.5782 -0.6891 -0.0047 7 6 2.2678 -1.1180 0.0031 8 6 1.8120 -2.5122 0.0077 9 8 0.6241 -2.7643 -0.0720 10 7 2.7089 -3.5139 0.1001 11 6 2.2493 -4.8991 0.2281 12 1 1.3359 -5.0338 -0.3513 13 6 1.9700 -5.2098 1.6999 14 6 1.4906 -6.6567 1.8337 15 6 2.5723 -7.6028 1.3089 16 6 2.8515 -7.2921 -0.1629 17 6 3.3309 -5.8454 -0.2967 18 1 4.2442 -5.7102 0.2828 19 6 3.6096 -5.5344 -1.7686 20 7 4.7263 -6.3579 -2.2387 21 6 5.1580 -6.2509 -3.5339 22 1 4.6750 -5.5599 -4.2089 23 6 6.2165 -7.0308 -3.9792 24 7 6.8055 -7.8726 -3.1565 25 14 6.8049 -6.8855 -5.7462 26 1 5.9824 -5.8764 -6.4605 27 1 8.2288 -6.4642 -5.7606 28 1 6.6710 -8.2009 -6.4222 29 1 -0.3633 0.0158 1.0276 30 1 -0.3633 0.8820 -0.5274 31 1 -0.3633 -0.8977 -0.5001 32 1 1.9088 2.1244 -0.0004 33 1 4.4583 -1.3152 -0.0083 34 1 3.6587 -3.3179 0.0819 35 1 2.8834 -5.0751 2.2794 36 1 1.1997 -4.5354 2.0739 37 1 1.2912 -6.8778 2.8822 38 1 0.5773 -6.7917 1.2542 39 1 2.2305 -8.6336 1.4038 40 1 3.4856 -7.4678 1.8884 41 1 1.9382 -7.4273 -0.7424 42 1 3.6218 -7.9666 -0.5369 43 1 2.7213 -5.7545 -2.3608 44 1 3.8653 -4.4802 -1.8752 45 1 5.1604 -6.9782 -1.6324 46 1 7.5449 -8.4178 -3.4679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699480523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = -1.607390 kcal Electronic energy + Delta-G solvation = -27451.321016 eV Core-core repulsion = 23595.050694 eV Total energy + Delta-G solvation = -3856.270323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69593 -39.81689 -38.00852 -36.54815 -34.62024 -34.37616 -32.87134 -31.88992 -30.36267 -29.60104 -28.53844 -26.72627 -25.24554 -23.56126 -22.92748 -21.64975 -20.74823 -20.63652 -20.21307 -19.40739 -18.11652 -17.11369 -16.24732 -15.98012 -15.87701 -14.94623 -14.79084 -14.47843 -14.31089 -14.18072 -14.05611 -13.80221 -13.59128 -13.27279 -13.19778 -13.08332 -13.01617 -12.72544 -12.44686 -12.43374 -11.84501 -11.64235 -11.54378 -11.13531 -11.02321 -10.89111 -10.87024 -10.72968 -10.41535 -10.22061 -10.11700 -9.97084 -9.85807 -9.64012 -9.01886 -8.89929 -8.84424 -8.44120 -6.90184 -5.75776 -3.03801 1.20861 1.91711 2.23109 2.58036 3.23361 3.32868 3.44395 3.50664 3.52478 4.51267 4.56681 4.60648 4.64296 4.81389 4.90753 4.94076 5.01071 5.04942 5.23826 5.28540 5.34649 5.40994 5.55801 5.59063 5.62063 5.65648 5.71910 5.73236 5.87958 6.09563 6.11778 6.18471 6.20899 6.24066 6.27845 6.38520 6.50363 6.53282 6.56118 6.69504 6.76585 6.79647 6.90988 7.49277 7.72599 8.13627 8.43418 9.54995 10.12425 10.47371 11.47165 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008106 B = 0.003463 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.291440 B = 8083.651557 C =10541.349900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.404 5.404 3 C 0.028 3.972 4 C -0.121 4.121 5 Cl -0.050 7.050 6 C -0.126 4.126 7 C -0.033 4.033 8 C 0.592 3.408 9 O -0.551 6.551 10 N -0.704 5.704 11 C 0.156 3.844 12 H 0.091 0.909 13 C -0.126 4.126 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.106 4.106 17 C -0.100 4.100 18 H 0.076 0.924 19 C 0.158 3.842 20 N -0.730 5.730 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.405 0.595 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 15.091 12.824 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.076 5.076 3 C -0.108 4.108 4 C -0.154 4.154 5 Cl -0.021 7.021 6 C -0.153 4.153 7 C -0.147 4.147 8 C 0.379 3.621 9 O -0.431 6.431 10 N -0.354 5.354 11 C 0.052 3.948 12 H 0.109 0.891 13 C -0.165 4.165 14 C -0.152 4.152 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.119 4.119 18 H 0.094 0.906 19 C 0.031 3.969 20 N -0.375 5.375 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.194 0.806 33 H 0.173 0.827 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.169 15.007 12.598 23.608 hybrid contribution 1.207 0.213 -0.841 1.487 sum -11.962 15.221 11.757 22.649 Atomic orbital electron populations 1.22380 0.75182 1.05878 1.04133 1.43766 1.07102 1.04501 1.52279 1.21694 0.88973 0.92149 1.08027 1.19896 0.88023 0.91413 1.16058 1.98331 1.40651 1.65493 1.97668 1.21295 0.95477 0.93332 1.05181 1.20087 0.89567 0.88179 1.16910 1.16822 0.85769 0.83181 0.76309 1.90761 1.16179 1.84695 1.51431 1.45766 1.09900 1.06388 1.73341 1.21065 0.98750 0.78837 0.96189 0.89123 1.21905 1.01409 0.96980 0.96157 1.21481 0.98872 0.94150 1.00726 1.21601 0.98665 0.98769 0.96892 1.21491 1.02015 0.95573 0.95377 1.21602 0.97359 0.94731 0.98249 0.90565 1.20668 0.91485 0.94419 0.90375 1.42360 1.36649 1.47412 1.11064 1.19266 1.11548 1.18117 0.87895 0.91265 1.24709 0.98995 0.99264 0.97943 1.69663 1.26059 1.28177 1.34338 0.86146 0.78353 0.77184 0.84711 1.20594 1.21871 1.21906 0.90377 0.89707 0.87146 0.80578 0.82685 0.75908 0.91728 0.91972 0.92138 0.91895 0.92060 0.91961 0.92022 0.90149 0.96402 0.96305 0.78214 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.65 59.85 0.64 1.15 16 2 N -0.40 -4.22 3.16 -120.19 -0.38 -4.60 16 3 C 0.03 0.27 11.36 -16.84 -0.19 0.08 16 4 C -0.12 -1.33 6.66 -39.94 -0.27 -1.59 16 5 Cl -0.05 -0.52 29.30 -51.86 -1.52 -2.04 16 6 C -0.13 -1.47 10.35 -39.09 -0.40 -1.88 16 7 C -0.03 -0.41 6.89 -81.98 -0.56 -0.98 16 8 C 0.59 8.12 7.74 -12.86 -0.10 8.03 16 9 O -0.55 -8.66 14.26 5.19 0.07 -8.58 16 10 N -0.70 -9.04 4.29 -55.11 -0.24 -9.28 16 11 C 0.16 2.09 1.95 -67.93 -0.13 1.95 16 12 H 0.09 1.37 7.50 -51.93 -0.39 0.98 16 13 C -0.13 -1.47 5.49 -26.73 -0.15 -1.61 16 14 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 15 C -0.12 -1.46 5.92 -26.74 -0.16 -1.62 16 16 C -0.11 -1.58 5.08 -26.74 -0.14 -1.71 16 17 C -0.10 -1.52 1.80 -90.62 -0.16 -1.68 16 18 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.10 5.56 -4.04 -0.02 3.08 16 20 N -0.73 -17.99 5.33 -59.91 -0.32 -18.31 16 21 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 25 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 1.10 6.19 -51.93 -0.32 0.78 16 32 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.16 1.63 7.45 -52.48 -0.39 1.24 16 34 H 0.41 4.77 7.29 -40.82 -0.30 4.48 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.38 7.30 -51.93 -0.38 0.00 16 45 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -32.16 384.67 -9.99 -42.14 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.05 Total: 10.04 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.05 Total: -5.42 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.21 Total: -59.40 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.16 -9.99 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699480523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.537 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds