Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35634 * 125.67833 * 2 1 4 4 C 1.35512 * 108.85434 * 180.29679 * 3 2 1 5 5 Cl 1.73600 * 126.07453 * 179.71215 * 4 3 2 6 6 C 1.39892 * 107.84784 * 359.73130 * 4 3 2 7 7 C 1.37639 * 125.67946 * 179.83967 * 2 1 3 8 8 C 1.46675 * 126.21936 * 359.96784 * 7 2 1 9 9 O 1.21698 * 119.99700 * 4.40777 * 8 7 2 10 10 N 1.34773 * 119.99859 * 184.40690 * 8 7 2 11 11 C 1.46498 * 120.00001 * 174.41130 * 10 8 7 12 12 H 1.09002 * 109.47452 * 34.99864 * 11 10 8 13 13 C 1.53001 * 109.47178 * 275.00130 * 11 10 8 14 14 C 1.53003 * 109.47240 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.46979 * 59.99833 * 14 13 11 16 16 C 1.52993 * 109.47392 * 299.99925 * 15 14 13 17 17 C 1.52999 * 109.47267 * 60.00305 * 16 15 14 18 18 H 1.09001 * 109.46974 * 59.99824 * 17 16 15 19 19 C 1.53001 * 109.47510 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.46996 * 295.00239 * 19 17 16 21 21 C 1.36936 * 119.99471 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00816 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99531 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00098 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99836 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47322 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47131 * 119.99755 * 25 23 21 28 28 H 1.48500 * 109.46981 * 239.99630 * 25 23 21 29 29 H 1.09004 * 109.46812 * 270.88130 * 1 2 3 30 30 H 1.08998 * 109.47225 * 30.87535 * 1 2 3 31 31 H 1.08997 * 109.47010 * 150.87863 * 1 2 3 32 32 H 1.07997 * 125.56825 * 359.97438 * 3 2 1 33 33 H 1.08011 * 126.44874 * 180.02562 * 6 4 3 34 34 H 0.97003 * 120.00194 * 354.41181 * 10 8 7 35 35 H 1.09001 * 109.47146 * 299.99874 * 13 11 10 36 36 H 1.09002 * 109.47389 * 59.99938 * 13 11 10 37 37 H 1.09000 * 109.46723 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.46703 * 299.99482 * 14 13 11 39 39 H 1.09010 * 109.47152 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47690 * 60.00253 * 15 14 13 41 41 H 1.09001 * 109.47267 * 300.00309 * 16 15 14 42 42 H 1.09002 * 109.47511 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.46724 * 54.99925 * 19 17 16 44 44 H 1.08997 * 109.47306 * 174.99663 * 19 17 16 45 45 H 0.96996 * 119.99999 * 359.97438 * 20 19 17 46 46 H 0.97003 * 119.99966 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1018 0.0000 4 6 3.5531 0.7096 -0.0066 5 17 4.9377 1.7568 -0.0164 6 6 3.5782 -0.6891 -0.0047 7 6 2.2678 -1.1180 0.0031 8 6 1.8120 -2.5122 0.0077 9 8 0.6241 -2.7643 -0.0720 10 7 2.7089 -3.5139 0.1001 11 6 2.2493 -4.8991 0.2281 12 1 1.3359 -5.0338 -0.3513 13 6 1.9700 -5.2098 1.6999 14 6 1.4906 -6.6567 1.8337 15 6 2.5723 -7.6028 1.3089 16 6 2.8515 -7.2921 -0.1629 17 6 3.3309 -5.8454 -0.2967 18 1 4.2442 -5.7102 0.2828 19 6 3.6096 -5.5344 -1.7686 20 7 4.7263 -6.3579 -2.2387 21 6 5.1580 -6.2509 -3.5339 22 1 4.6750 -5.5599 -4.2089 23 6 6.2165 -7.0308 -3.9792 24 7 6.8055 -7.8726 -3.1565 25 14 6.8049 -6.8855 -5.7462 26 1 5.9824 -5.8764 -6.4605 27 1 8.2288 -6.4642 -5.7606 28 1 6.6710 -8.2009 -6.4222 29 1 -0.3633 0.0158 1.0276 30 1 -0.3633 0.8820 -0.5274 31 1 -0.3633 -0.8977 -0.5001 32 1 1.9088 2.1244 -0.0004 33 1 4.4583 -1.3152 -0.0083 34 1 3.6587 -3.3179 0.0819 35 1 2.8834 -5.0751 2.2794 36 1 1.1997 -4.5354 2.0739 37 1 1.2912 -6.8778 2.8822 38 1 0.5773 -6.7917 1.2542 39 1 2.2305 -8.6336 1.4038 40 1 3.4856 -7.4678 1.8884 41 1 1.9382 -7.4273 -0.7424 42 1 3.6218 -7.9666 -0.5369 43 1 2.7213 -5.7545 -2.3608 44 1 3.8653 -4.4802 -1.8752 45 1 5.1604 -6.9782 -1.6324 46 1 7.5449 -8.4178 -3.4679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699480523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = -20.252869 kcal Electronic energy + Delta-G solvation = -27452.129545 eV Core-core repulsion = 23595.050694 eV Total energy + Delta-G solvation = -3857.078851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.53869 -40.91113 -39.15217 -37.35515 -36.42289 -35.41694 -33.76253 -33.58060 -31.33503 -31.21956 -29.55515 -27.42808 -26.94545 -24.73409 -24.50330 -22.69919 -22.01524 -21.56232 -21.25421 -20.43077 -19.34837 -18.80554 -17.33832 -16.94286 -16.78309 -16.67893 -15.84340 -15.74183 -15.42709 -15.32100 -15.16399 -14.95403 -14.87331 -14.57058 -14.52544 -14.07329 -13.94871 -13.78792 -13.65876 -13.32283 -13.16964 -12.95999 -12.76894 -12.66246 -12.40682 -12.20799 -12.07808 -11.92322 -11.86654 -11.84375 -11.50450 -11.35066 -11.13705 -11.01568 -10.87546 -10.09453 -9.73015 -9.27060 -8.97971 -7.95030 -5.22854 0.31401 1.13566 1.41557 1.47103 1.47295 1.57326 1.71003 2.23229 2.41511 2.55584 3.38609 3.51818 3.66562 3.79084 3.89412 3.93709 4.01831 4.10684 4.23516 4.26390 4.38349 4.39540 4.45507 4.49881 4.53039 4.53665 4.57308 4.73362 4.84863 4.89302 4.91658 5.05252 5.11908 5.16491 5.25339 5.29865 5.31481 5.35851 5.44325 5.48387 5.51082 5.61086 5.69428 6.03686 6.27665 6.45690 7.09475 7.34890 8.09816 8.34985 9.28350 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008106 B = 0.003463 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.291440 B = 8083.651557 C =10541.349900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.406 5.406 3 C 0.050 3.950 4 C -0.143 4.143 5 Cl -0.049 7.049 6 C -0.129 4.129 7 C -0.061 4.061 8 C 0.591 3.409 9 O -0.576 6.576 10 N -0.703 5.703 11 C 0.165 3.835 12 H 0.073 0.927 13 C -0.118 4.118 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.086 4.086 18 H 0.079 0.921 19 C 0.160 3.840 20 N -0.738 5.738 21 C -0.245 4.245 22 H 0.068 0.932 23 C -0.069 4.069 24 N -0.965 5.965 25 Si 0.968 3.032 26 H -0.271 1.271 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.213 0.787 33 H 0.158 0.842 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.005 0.995 44 H 0.021 0.979 45 H 0.377 0.623 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 16.707 13.619 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.078 5.078 3 C -0.088 4.088 4 C -0.175 4.175 5 Cl -0.020 7.020 6 C -0.156 4.156 7 C -0.174 4.174 8 C 0.379 3.621 9 O -0.458 6.458 10 N -0.352 5.352 11 C 0.060 3.940 12 H 0.091 0.909 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.105 4.105 18 H 0.097 0.903 19 C 0.033 3.967 20 N -0.382 5.382 21 C -0.377 4.377 22 H 0.086 0.914 23 C -0.262 4.262 24 N -0.616 5.616 25 Si 0.797 3.203 26 H -0.195 1.195 27 H -0.218 1.218 28 H -0.220 1.220 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.176 0.824 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.023 0.977 44 H 0.038 0.962 45 H 0.210 0.790 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.977 16.640 13.400 25.530 hybrid contribution 1.410 -0.212 -1.102 1.802 sum -12.567 16.428 12.298 24.063 Atomic orbital electron populations 1.22523 0.73797 1.06292 1.05118 1.44021 1.08028 1.04180 1.51575 1.22267 0.88274 0.93212 1.05089 1.20039 0.88867 0.91205 1.17425 1.98329 1.40717 1.65230 1.97734 1.21447 0.95456 0.94091 1.04629 1.19916 0.90234 0.88006 1.19268 1.17031 0.85414 0.83892 0.75712 1.90745 1.17112 1.85180 1.52753 1.45735 1.10156 1.06119 1.73227 1.20902 0.96980 0.78757 0.97346 0.90892 1.21840 1.01864 0.97533 0.94385 1.21466 0.98174 0.93066 1.02032 1.21544 0.99427 0.99791 0.94410 1.21429 1.00641 0.94493 0.97675 1.21439 0.98220 0.95672 0.95158 0.90260 1.20760 0.89271 0.93573 0.93064 1.42501 1.37640 1.47859 1.10159 1.19594 1.11327 1.17563 0.89183 0.91356 1.25464 0.99535 0.99431 1.01756 1.69800 1.26601 1.29160 1.36028 0.85154 0.77689 0.77105 0.80303 1.19523 1.21802 1.21963 0.89201 0.86436 0.89460 0.77002 0.82435 0.75350 0.90719 0.92050 0.89843 0.92064 0.90928 0.91436 0.92576 0.93072 0.97685 0.96153 0.79034 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 10.65 127.77 1.36 2.24 16 2 N -0.41 -7.80 3.16 -534.18 -1.69 -9.49 16 3 C 0.05 0.80 11.36 83.47 0.95 1.75 16 4 C -0.14 -2.91 6.66 22.04 0.15 -2.76 16 5 Cl -0.05 -0.95 29.30 -2.72 -0.08 -1.03 16 6 C -0.13 -2.93 10.35 22.59 0.23 -2.70 16 7 C -0.06 -1.46 6.89 40.35 0.28 -1.18 16 8 C 0.59 16.23 7.74 86.45 0.67 16.90 16 9 O -0.58 -18.26 14.26 -4.34 -0.06 -18.32 16 10 N -0.70 -18.03 4.29 -446.50 -1.91 -19.95 16 11 C 0.16 4.38 1.95 44.99 0.09 4.47 16 12 H 0.07 2.24 7.50 -2.39 -0.02 2.22 16 13 C -0.12 -2.57 5.49 30.60 0.17 -2.40 16 14 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 15 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 16 C -0.10 -3.12 5.08 30.59 0.16 -2.96 16 17 C -0.09 -2.62 1.80 -10.79 -0.02 -2.64 16 18 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 19 C 0.16 6.42 5.56 86.38 0.48 6.90 16 20 N -0.74 -37.22 5.33 -343.45 -1.83 -39.05 16 21 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 22 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 24 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 25 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.70 6.19 -2.39 -0.01 1.68 16 32 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.16 3.30 7.45 -2.90 -0.02 3.27 16 34 H 0.41 9.66 7.29 -92.71 -0.68 8.98 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.83 7.18 -2.39 -0.02 1.82 16 43 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.02 0.82 7.30 -2.39 -0.02 0.81 16 45 H 0.38 19.90 6.85 -92.71 -0.64 19.26 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -69.60 384.67 2.60 -67.00 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.31 Total: 33.88 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.18 Total: -3.27 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -5.15 Total: -126.81 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.06 Total: -18.32 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -69.60 2.60 -67.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699480523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.750 kcal (2) G-P(sol) polarization free energy of solvation -69.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds