Wall clock time and date at job start Tue Mar 31 2020 22:29:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.35625 * 125.67410 * 2 1
4 4 C 1.35520 * 108.84875 * 180.29017 * 3 2 1
5 5 Cl 1.73604 * 126.07825 * 179.70692 * 4 3 2
6 6 C 1.39892 * 107.85137 * 359.73175 * 4 3 2
7 7 C 1.37634 * 125.67572 * 179.82831 * 2 1 3
8 8 C 1.46668 * 126.22206 * 359.97438 * 7 2 1
9 9 O 1.21699 * 120.00124 * 3.97214 * 8 7 2
10 10 N 1.34780 * 120.00167 * 183.97390 * 8 7 2
11 11 C 1.46503 * 120.00051 * 174.37252 * 10 8 7
12 12 H 1.08999 * 109.47204 * 325.00055 * 11 10 8
13 13 C 1.52996 * 109.47052 * 85.00244 * 11 10 8
14 14 C 1.53000 * 109.47332 * 179.97438 * 13 11 10
15 15 C 1.52998 * 109.47001 * 299.99963 * 14 13 11
16 16 C 1.53003 * 109.47369 * 59.99344 * 15 14 13
17 17 C 1.52997 * 109.47191 * 300.00635 * 16 15 14
18 18 H 1.08999 * 109.46893 * 299.99369 * 17 16 15
19 19 C 1.53007 * 109.46906 * 179.97438 * 17 16 15
20 20 N 1.46503 * 109.47157 * 64.99765 * 19 17 16
21 21 C 1.36930 * 119.99703 * 180.02562 * 20 19 17
22 22 H 1.08001 * 120.00350 * 359.97438 * 21 20 19
23 23 C 1.38818 * 119.99811 * 179.97438 * 21 20 19
24 24 N 1.31611 * 119.99795 * 359.97438 * 23 21 20
25 25 Si 1.86802 * 119.99795 * 179.97438 * 23 21 20
26 26 H 1.48504 * 109.46816 * 60.00683 * 25 23 21
27 27 H 1.48500 * 109.46953 * 179.97438 * 25 23 21
28 28 H 1.48493 * 109.47467 * 300.00364 * 25 23 21
29 29 H 1.09009 * 109.47189 * 264.40195 * 1 2 3
30 30 H 1.09003 * 109.47227 * 24.39927 * 1 2 3
31 31 H 1.08994 * 109.47703 * 144.39870 * 1 2 3
32 32 H 1.07995 * 125.58102 * 359.97438 * 3 2 1
33 33 H 1.07994 * 126.45260 * 179.97438 * 6 4 3
34 34 H 0.97004 * 119.99804 * 354.37403 * 10 8 7
35 35 H 1.09000 * 109.47256 * 299.99780 * 13 11 10
36 36 H 1.08996 * 109.47462 * 59.99380 * 13 11 10
37 37 H 1.08999 * 109.46972 * 59.99782 * 14 13 11
38 38 H 1.08993 * 109.47293 * 179.97438 * 14 13 11
39 39 H 1.09009 * 109.46912 * 299.99812 * 15 14 13
40 40 H 1.08998 * 109.47502 * 179.97438 * 15 14 13
41 41 H 1.08999 * 109.47094 * 179.97438 * 16 15 14
42 42 H 1.09009 * 109.46721 * 60.00351 * 16 15 14
43 43 H 1.08997 * 109.46996 * 184.99922 * 19 17 16
44 44 H 1.09004 * 109.46934 * 304.99522 * 19 17 16
45 45 H 0.96998 * 119.99849 * 359.97438 * 20 19 17
46 46 H 0.97004 * 120.00119 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2559 1.1017 0.0000
4 6 3.5531 0.7095 -0.0065
5 17 4.9378 1.7566 -0.0163
6 6 3.5782 -0.6892 -0.0045
7 6 2.2677 -1.1180 0.0034
8 6 1.8120 -2.5121 0.0081
9 8 0.6235 -2.7641 -0.0637
10 7 2.7093 -3.5142 0.0919
11 6 2.2505 -4.8995 0.2209
12 1 1.3418 -4.9268 0.8222
13 6 1.9604 -5.4721 -1.1679
14 6 1.4818 -6.9191 -1.0333
15 6 2.5687 -7.7546 -0.3541
16 6 2.8590 -7.1820 1.0348
17 6 3.3375 -5.7350 0.9000
18 1 4.2461 -5.7074 0.2986
19 6 3.6271 -5.1623 2.2890
20 7 4.7486 -5.8869 2.8919
21 6 5.1895 -5.5476 4.1431
22 1 4.7108 -4.7456 4.6854
23 6 6.2518 -6.2346 4.7146
24 7 6.8349 -7.2122 4.0540
25 14 6.8537 -5.7712 6.4212
26 1 5.7489 -5.9415 7.3989
27 1 7.9895 -6.6493 6.8008
28 1 7.3007 -4.3552 6.4211
29 1 -0.3634 -0.1003 1.0228
30 1 -0.3634 0.9359 -0.4245
31 1 -0.3634 -0.8355 -0.5982
32 1 1.9089 2.1244 -0.0004
33 1 4.4582 -1.3152 -0.0087
34 1 3.6590 -3.3182 0.0668
35 1 1.1864 -4.8766 -1.6520
36 1 2.8690 -5.4448 -1.7693
37 1 0.5732 -6.9467 -0.4318
38 1 1.2747 -7.3268 -2.0227
39 1 3.4774 -7.7269 -0.9556
40 1 2.2277 -8.7854 -0.2577
41 1 3.6330 -7.7776 1.5188
42 1 1.9504 -7.2097 1.6363
43 1 3.8823 -4.1063 2.2005
44 1 2.7438 -5.2711 2.9183
45 1 5.1783 -6.6074 2.4050
46 1 7.5775 -7.6920 4.4532
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699480524.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:29:37
Heat of formation + Delta-G solvation = -20.141013 kcal
Electronic energy + Delta-G solvation = -27490.520019 eV
Core-core repulsion = 23633.446018 eV
Total energy + Delta-G solvation = -3857.074001 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.145 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.53539 -40.90999 -39.14372 -37.35526 -36.41200 -35.41007 -33.75976 -33.57948
-31.34034 -31.21134 -29.54889 -27.42869 -26.93737 -24.72085 -24.49098 -22.71955
-22.00756 -21.56579 -21.24454 -20.42722 -19.34546 -18.81000 -17.33008 -16.91100
-16.81418 -16.66889 -15.87453 -15.68066 -15.42294 -15.32806 -15.17433 -14.95418
-14.86175 -14.57382 -14.47413 -14.10063 -13.93519 -13.78800 -13.64698 -13.31651
-13.16890 -12.93469 -12.72376 -12.67461 -12.41516 -12.21741 -12.12122 -11.93020
-11.86987 -11.83517 -11.50666 -11.35087 -11.16821 -10.98842 -10.85445 -10.09450
-9.73047 -9.26729 -8.97447 -7.94082 -5.21949 0.31715 1.13398 1.41728
1.47401 1.49610 1.55810 1.70512 2.24147 2.41797 2.56352 3.39265
3.52183 3.67215 3.79190 3.89310 3.94200 4.01781 4.11059 4.22992
4.26531 4.38116 4.39024 4.45707 4.50221 4.52805 4.53828 4.58285
4.72567 4.84969 4.89236 4.91244 5.06036 5.13310 5.16652 5.25384
5.30126 5.31739 5.35741 5.44674 5.48356 5.51114 5.60846 5.69383
6.03724 6.28187 6.46110 7.09393 7.35519 8.10662 8.35731 9.28912
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.007734 B = 0.003658 C = 0.002699
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3619.605418 B = 7653.287712 C =10372.698637
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.067 3.933
2 N -0.406 5.406
3 C 0.050 3.950
4 C -0.143 4.143
5 Cl -0.049 7.049
6 C -0.130 4.130
7 C -0.061 4.061
8 C 0.591 3.409
9 O -0.574 6.574
10 N -0.703 5.703
11 C 0.167 3.833
12 H 0.072 0.928
13 C -0.118 4.118
14 C -0.109 4.109
15 C -0.114 4.114
16 C -0.104 4.104
17 C -0.086 4.086
18 H 0.079 0.921
19 C 0.160 3.840
20 N -0.738 5.738
21 C -0.247 4.247
22 H 0.068 0.932
23 C -0.068 4.068
24 N -0.965 5.965
25 Si 0.968 3.032
26 H -0.281 1.281
27 H -0.293 1.293
28 H -0.279 1.279
29 H 0.080 0.920
30 H 0.122 0.878
31 H 0.087 0.913
32 H 0.214 0.786
33 H 0.158 0.842
34 H 0.410 0.590
35 H 0.062 0.938
36 H 0.073 0.927
37 H 0.061 0.939
38 H 0.082 0.918
39 H 0.067 0.933
40 H 0.072 0.928
41 H 0.051 0.949
42 H 0.056 0.944
43 H 0.022 0.978
44 H 0.005 0.995
45 H 0.377 0.623
46 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.911 14.108 -14.847 24.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.078 5.078
3 C -0.088 4.088
4 C -0.176 4.176
5 Cl -0.021 7.021
6 C -0.156 4.156
7 C -0.175 4.175
8 C 0.379 3.621
9 O -0.456 6.456
10 N -0.353 5.353
11 C 0.063 3.937
12 H 0.090 0.910
13 C -0.157 4.157
14 C -0.147 4.147
15 C -0.152 4.152
16 C -0.142 4.142
17 C -0.105 4.105
18 H 0.097 0.903
19 C 0.033 3.967
20 N -0.381 5.381
21 C -0.379 4.379
22 H 0.086 0.914
23 C -0.261 4.261
24 N -0.616 5.616
25 Si 0.797 3.203
26 H -0.207 1.207
27 H -0.219 1.219
28 H -0.205 1.205
29 H 0.099 0.901
30 H 0.141 0.859
31 H 0.106 0.894
32 H 0.230 0.770
33 H 0.175 0.825
34 H 0.246 0.754
35 H 0.080 0.920
36 H 0.091 0.909
37 H 0.079 0.921
38 H 0.101 0.899
39 H 0.085 0.915
40 H 0.091 0.909
41 H 0.069 0.931
42 H 0.075 0.925
43 H 0.039 0.961
44 H 0.023 0.977
45 H 0.209 0.791
46 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -14.048 14.059 -14.718 24.731
hybrid contribution 1.409 -0.002 1.146 1.816
sum -12.639 14.057 -13.572 23.271
Atomic orbital electron populations
1.22470 0.73761 1.06346 1.04738 1.44016 1.08033 1.04189 1.51590
1.22274 0.88269 0.93213 1.05089 1.20049 0.88868 0.91224 1.17444
1.98329 1.40740 1.65253 1.97733 1.21447 0.95474 0.94095 1.04634
1.19936 0.90219 0.88072 1.19232 1.17014 0.85417 0.83813 0.75829
1.90754 1.16964 1.85251 1.52618 1.45744 1.10163 1.06114 1.73257
1.20886 0.96738 0.78901 0.97194 0.91023 1.21832 1.01822 0.96677
0.95345 1.21465 0.98142 0.93655 1.01479 1.21548 0.99360 0.99413
0.94859 1.21429 1.00641 0.94131 0.98018 1.21445 0.98145 0.95641
0.95281 0.90290 1.20765 0.89204 0.94438 0.92264 1.42485 1.37312
1.41205 1.17146 1.19521 1.11244 1.13302 0.93789 0.91364 1.25461
0.99531 0.98930 1.02195 1.69784 1.26511 1.25897 1.39398 0.85300
0.77405 0.77341 0.80252 1.20709 1.21900 1.20498 0.90121 0.85919
0.89395 0.76965 0.82470 0.75378 0.91970 0.90853 0.92068 0.89932
0.91473 0.90935 0.93055 0.92548 0.96061 0.97667 0.79052 0.93949
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.95 10.47 127.77 1.34 2.29 16
2 N -0.41 -7.95 3.16 -534.18 -1.69 -9.64 16
3 C 0.05 0.83 11.35 83.48 0.95 1.77 16
4 C -0.14 -3.00 6.66 22.04 0.15 -2.85 16
5 Cl -0.05 -0.99 29.30 -2.72 -0.08 -1.07 16
6 C -0.13 -3.00 10.35 22.59 0.23 -2.77 16
7 C -0.06 -1.49 6.89 40.35 0.28 -1.21 16
8 C 0.59 16.21 7.73 86.44 0.67 16.87 16
9 O -0.57 -17.96 14.43 -4.35 -0.06 -18.02 16
10 N -0.70 -18.04 4.29 -446.51 -1.91 -19.96 16
11 C 0.17 4.46 1.86 44.99 0.08 4.54 16
12 H 0.07 2.17 7.66 -2.39 -0.02 2.16 16
13 C -0.12 -2.63 5.49 30.59 0.17 -2.46 16
14 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16
15 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16
16 C -0.10 -3.11 5.08 30.59 0.16 -2.96 16
17 C -0.09 -2.62 1.80 -10.79 -0.02 -2.64 16
18 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16
19 C 0.16 6.38 5.56 86.38 0.48 6.86 16
20 N -0.74 -37.12 5.33 -343.43 -1.83 -38.95 16
21 C -0.25 -13.88 9.99 84.04 0.84 -13.04 16
22 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16
23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16
24 N -0.97 -58.57 13.06 21.65 0.28 -58.28 16
25 Si 0.97 46.39 29.55 68.60 2.03 48.41 16
26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16
28 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
29 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16
30 H 0.12 0.78 8.12 -2.39 -0.02 0.77 16
31 H 0.09 1.59 6.57 -2.39 -0.02 1.58 16
32 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16
33 H 0.16 3.37 7.44 -2.91 -0.02 3.35 16
34 H 0.41 9.67 7.29 -92.71 -0.68 8.99 16
35 H 0.06 1.47 8.07 -2.39 -0.02 1.45 16
36 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16
37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
39 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
41 H 0.05 1.84 7.18 -2.39 -0.02 1.82 16
42 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16
43 H 0.02 0.85 7.30 -2.39 -0.02 0.84 16
44 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16
45 H 0.38 19.87 6.85 -92.71 -0.64 19.23 16
46 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16
Total: -1.00 -69.27 384.99 2.57 -66.70
By element:
Atomic # 1 Polarization: 34.63 SS G_CDS: -0.31 Total: 34.32 kcal
Atomic # 6 Polarization: -9.66 SS G_CDS: 6.15 Total: -3.51 kcal
Atomic # 7 Polarization: -121.68 SS G_CDS: -5.15 Total: -126.83 kcal
Atomic # 8 Polarization: -17.96 SS G_CDS: -0.06 Total: -18.02 kcal
Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal
Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal
Total: -69.27 2.57 -66.70 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699480524.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.557 kcal
(2) G-P(sol) polarization free energy of solvation -69.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds