Wall clock time and date at job start Tue Mar 31 2020 22:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48505 * 109.46761 * 270.00090 * 3 2 1 5 5 H 1.48494 * 109.46986 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.46845 * 150.00373 * 3 2 1 7 7 C 1.38950 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00234 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99884 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99804 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99847 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.46893 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99916 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46994 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47398 * 295.00443 * 15 14 13 17 17 N 1.46500 * 109.47023 * 55.00514 * 15 14 13 18 18 C 1.34777 * 120.00075 * 204.99547 * 17 15 14 19 19 O 1.21742 * 119.99900 * 0.02562 * 18 17 15 20 20 C 1.46370 * 120.00227 * 179.97438 * 18 17 15 21 21 C 1.33980 * 119.23344 * 359.72981 * 20 18 17 22 22 O 1.34994 * 121.69056 * 180.12101 * 21 20 18 23 23 C 1.43245 * 116.83022 * 343.32035 * 22 21 20 24 24 C 1.53552 * 108.08845 * 45.24836 * 23 22 21 25 25 O 1.36217 * 119.23511 * 180.02562 * 20 18 17 26 26 C 1.52997 * 109.47060 * 175.00273 * 15 14 13 27 27 C 1.52999 * 117.50101 * 248.75250 * 26 15 14 28 28 C 1.52996 * 117.50050 * 180.09109 * 26 15 14 29 29 H 0.96996 * 120.00310 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99878 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46907 * 60.00588 * 12 10 9 32 32 H 1.09002 * 109.47553 * 300.00536 * 12 10 9 33 33 H 1.00905 * 111.00286 * 56.05166 * 13 12 10 34 34 H 1.09008 * 109.46460 * 60.00568 * 14 13 12 35 35 H 1.08990 * 109.47471 * 300.00304 * 14 13 12 36 36 H 0.96997 * 120.00274 * 24.99518 * 17 15 14 37 37 H 1.08002 * 119.15005 * 0.39091 * 21 20 18 38 38 H 1.09005 * 109.73389 * 285.60305 * 23 22 21 39 39 H 1.08995 * 109.74336 * 164.90425 * 23 22 21 40 40 H 1.08998 * 109.74957 * 182.21481 * 24 23 22 41 41 H 1.09003 * 109.74978 * 61.48212 * 24 23 22 42 42 H 1.09002 * 115.54867 * 34.41862 * 26 15 14 43 43 H 1.08998 * 117.49862 * 359.97438 * 27 26 15 44 44 H 1.09000 * 117.50295 * 145.02180 * 27 26 15 45 45 H 1.09005 * 117.49713 * 214.98330 * 28 26 15 46 46 H 1.08996 * 117.49883 * 359.97027 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2102 -3.5579 -0.0031 12 6 1.2438 -4.8630 -0.0032 13 7 2.1984 -5.9795 -0.0050 14 6 1.4981 -7.2709 -0.0050 15 6 2.5230 -8.4068 -0.0061 16 1 3.0883 -8.3853 -0.9379 17 7 3.4391 -8.2392 1.1248 18 6 4.6780 -8.7671 1.0724 19 8 5.0361 -9.3830 0.0852 20 6 5.5935 -8.5991 2.2021 21 6 5.1858 -7.9131 3.2783 22 8 5.9898 -7.7260 4.3465 23 6 7.1362 -8.5786 4.4500 24 6 7.8066 -8.6457 3.0703 25 8 6.8423 -9.1388 2.1324 26 6 1.7979 -9.7482 0.1195 27 6 1.9776 -10.5291 1.4229 28 6 2.6548 -11.0154 0.1392 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0024 31 1 0.6168 -4.9202 -0.8931 32 1 0.6174 -4.9214 0.8869 33 1 2.8338 -5.9132 0.7760 34 1 0.8723 -7.3447 -0.8944 35 1 0.8742 -7.3459 0.8855 36 1 3.1540 -7.7482 1.9112 37 1 4.1868 -7.5028 3.2933 38 1 6.8256 -9.5772 4.7574 39 1 7.8349 -8.1690 5.1794 40 1 8.6618 -9.3204 3.1088 41 1 8.1351 -7.6502 2.7715 42 1 0.8263 -9.8051 -0.3714 43 1 2.6128 -10.0875 2.1907 44 1 1.1245 -11.1002 1.7892 45 1 2.2469 -11.9063 -0.3386 46 1 3.7352 -10.8937 0.0621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699567947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:12 Heat of formation + Delta-G solvation = -83.592460 kcal Electronic energy + Delta-G solvation = -29696.059688 eV Core-core repulsion = 25395.525062 eV Total energy + Delta-G solvation = -4300.534627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41931 -40.16178 -38.32287 -37.64525 -36.96423 -35.60950 -34.12942 -33.75002 -32.23065 -31.23874 -30.04396 -28.59455 -26.36961 -25.65724 -24.18953 -22.67887 -22.56890 -22.00266 -20.38884 -19.81409 -19.31853 -18.66047 -18.48008 -17.88913 -16.82711 -16.58737 -16.21702 -16.07048 -15.45579 -15.36632 -15.10514 -14.87830 -14.59415 -14.49196 -14.43940 -14.14884 -13.77585 -13.59214 -13.51667 -13.16798 -12.62436 -12.51748 -12.17434 -11.94558 -11.85554 -11.59163 -11.52660 -11.42260 -11.33726 -11.04454 -10.97369 -10.50977 -10.40291 -10.23363 -10.10413 -9.95877 -9.52199 -9.20879 -8.49826 -8.46938 -8.11877 -7.97549 -6.43113 -3.83904 1.06631 2.34664 2.81510 3.08876 3.17241 3.25972 3.31694 3.44824 3.69925 3.88822 3.95458 4.01779 4.23599 4.44798 4.48843 4.57619 4.70441 4.77705 4.81054 4.87132 4.96034 5.02092 5.12480 5.16198 5.21498 5.27191 5.32083 5.50513 5.56256 5.58600 5.72149 5.81105 5.87940 5.93694 6.01295 6.23127 6.23372 6.29467 6.46139 6.96214 7.10665 7.29632 7.54105 7.55175 8.04196 8.04854 8.59703 9.16645 9.52657 10.04057 10.74617 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.002696 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.330260 B =10382.156313 C =12274.919431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.054 3.946 15 C 0.182 3.818 16 H 0.106 0.894 17 N -0.714 5.714 18 C 0.582 3.418 19 O -0.514 6.514 20 C -0.070 4.070 21 C 0.010 3.990 22 O -0.298 6.298 23 C 0.014 3.986 24 C 0.017 3.983 25 O -0.285 6.285 26 C -0.167 4.167 27 C -0.178 4.178 28 C -0.183 4.183 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.346 0.654 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.396 0.604 37 H 0.177 0.823 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -20.938 9.072 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.300 5.300 14 C -0.076 4.076 15 C 0.078 3.922 16 H 0.124 0.876 17 N -0.369 5.369 18 C 0.369 3.631 19 O -0.391 6.391 20 C -0.119 4.119 21 C -0.057 4.057 22 O -0.210 6.210 23 C -0.061 4.061 24 C -0.059 4.059 25 O -0.199 6.199 26 C -0.187 4.187 27 C -0.215 4.215 28 C -0.219 4.219 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.166 0.834 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.231 0.769 37 H 0.194 0.806 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.131 0.869 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.920 -21.199 7.696 23.317 hybrid contribution -0.686 1.136 1.395 1.926 sum 5.234 -20.063 9.091 22.640 Atomic orbital electron populations 1.69608 1.05937 1.28177 1.50612 1.25258 0.95630 0.99721 0.97295 0.85859 0.79222 0.80789 0.78443 1.20367 1.20938 1.19415 1.19705 0.93378 0.82230 1.47579 0.87928 1.41861 1.09186 1.04592 1.64342 1.19799 0.88402 0.84716 0.84614 1.90536 1.13727 1.87022 1.55319 1.21695 0.94273 0.90903 1.01378 1.60012 1.18744 0.99748 1.51459 1.22248 0.94987 0.88563 1.01845 1.20586 0.89485 0.91797 0.90309 0.87642 1.45816 1.13316 1.56858 1.20887 1.17000 0.80995 0.79363 0.85706 1.90793 1.75490 1.40241 1.32574 1.20358 0.88432 1.07555 0.95524 1.23123 0.96139 1.00635 0.85803 1.86116 1.36173 1.56955 1.41784 1.23741 0.87900 0.95815 0.98651 1.23692 0.91433 1.02319 0.88417 1.86416 1.16986 1.60620 1.55868 1.22713 1.01018 0.92472 1.02520 1.22913 1.03190 1.03906 0.91513 1.23351 1.01369 0.96794 1.00423 0.91864 0.77464 0.89369 0.93776 0.83390 0.89116 0.94667 0.76852 0.80637 0.90085 0.86008 0.86005 0.90160 0.86899 0.89139 0.89203 0.89345 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.08 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.18 7.82 -10.98 -0.09 10.10 16 11 O -0.58 -15.69 15.78 5.55 0.09 -15.61 16 12 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 13 N -0.67 -10.13 6.12 -115.06 -0.70 -10.84 16 14 C 0.05 0.59 5.28 -3.82 -0.02 0.57 16 15 C 0.18 2.03 2.74 -67.93 -0.19 1.84 16 16 H 0.11 1.46 7.58 -51.93 -0.39 1.06 16 17 N -0.71 -7.68 2.82 -55.21 -0.16 -7.83 16 18 C 0.58 7.81 6.56 -12.99 -0.09 7.72 16 19 O -0.51 -8.66 13.94 -10.06 -0.14 -8.80 16 20 C -0.07 -0.85 6.61 -37.81 -0.25 -1.10 16 21 C 0.01 0.10 10.58 29.24 0.31 0.41 16 22 O -0.30 -2.93 10.47 -30.81 -0.32 -3.26 16 23 C 0.01 0.10 7.30 37.44 0.27 0.37 16 24 C 0.02 0.14 7.31 37.44 0.27 0.41 16 25 O -0.29 -3.60 10.28 -45.77 -0.47 -4.07 16 26 C -0.17 -1.61 5.70 -90.62 -0.52 -2.13 16 27 C -0.18 -1.63 9.74 -26.69 -0.26 -1.89 16 28 C -0.18 -1.96 9.82 -26.70 -0.26 -2.22 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.35 5.37 7.28 -39.29 -0.29 5.09 16 34 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.40 3.39 5.99 -40.82 -0.24 3.14 16 37 H 0.18 1.32 6.08 -52.49 -0.32 1.00 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 43 H 0.09 0.84 6.67 -51.93 -0.35 0.49 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.12 1.58 5.01 -51.93 -0.26 1.32 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -35.46 380.93 -7.74 -43.20 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -6.33 Total: 16.35 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.08 Total: 6.93 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.19 Total: -56.44 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.85 Total: -31.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.46 -7.74 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699567947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.395 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds