Wall clock time and date at job start Tue Mar 31 2020 23:07:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86801 * 119.99977 * 2 1
4 4 H 1.48500 * 109.46992 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47220 * 299.99493 * 3 2 1
6 6 H 1.48506 * 109.47180 * 59.99475 * 3 2 1
7 7 C 1.38810 * 120.00138 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99998 * 163.06663 * 7 2 1
9 9 N 1.36937 * 119.99772 * 343.07365 * 7 2 1
10 10 C 1.46924 * 120.63233 * 331.84236 * 9 7 2
11 11 C 1.53191 * 108.77761 * 233.58843 * 10 9 7
12 12 C 1.53036 * 109.31371 * 305.36717 * 11 10 9
13 13 F 1.39902 * 109.45833 * 301.34206 * 12 11 10
14 14 F 1.39898 * 109.45206 * 181.37618 * 12 11 10
15 15 C 1.53043 * 109.54098 * 61.36345 * 12 11 10
16 16 H 1.08997 * 109.49529 * 58.58735 * 15 12 11
17 17 C 1.52996 * 109.49780 * 178.68512 * 15 12 11
18 18 N 1.46505 * 109.47053 * 184.83802 * 17 15 12
19 19 C 1.34778 * 119.99857 * 180.02562 * 18 17 15
20 20 O 1.21281 * 119.99909 * 359.97438 * 19 18 17
21 21 C 1.50705 * 119.99632 * 179.97438 * 19 18 17
22 22 C 1.50697 * 109.46540 * 179.97438 * 21 19 18
23 23 C 1.38678 * 120.41619 * 90.00794 * 22 21 19
24 24 C 1.38631 * 118.41842 * 179.97438 * 23 22 21
25 25 C 1.38220 * 119.16337 * 359.97438 * 24 23 22
26 26 N 1.31861 * 120.76196 * 0.02562 * 25 24 23
27 27 C 1.31877 * 121.72683 * 359.70477 * 26 25 24
28 28 C 1.46933 * 120.63045 * 151.82696 * 9 7 2
29 29 H 0.97004 * 119.99924 * 0.02562 * 1 2 3
30 30 H 1.09003 * 109.58724 * 113.80493 * 10 9 7
31 31 H 1.08999 * 109.58891 * 353.37707 * 10 9 7
32 32 H 1.09000 * 109.50010 * 185.41207 * 11 10 9
33 33 H 1.09008 * 109.49412 * 65.31465 * 11 10 9
34 34 H 1.08997 * 109.47332 * 304.83645 * 17 15 12
35 35 H 1.08999 * 109.47591 * 64.83962 * 17 15 12
36 36 H 0.97001 * 120.00029 * 359.97438 * 18 17 15
37 37 H 1.08997 * 109.47155 * 299.99873 * 21 19 18
38 38 H 1.09000 * 109.46581 * 60.00099 * 21 19 18
39 39 H 1.07993 * 120.78709 * 359.97173 * 23 22 21
40 40 H 1.08002 * 120.41686 * 179.97438 * 24 23 22
41 41 H 1.07999 * 119.61822 * 179.97438 * 25 24 23
42 42 H 1.08002 * 119.61786 * 180.31477 * 27 26 25
43 43 H 1.08994 * 109.58488 * 6.61969 * 28 9 7
44 44 H 1.09003 * 109.58273 * 246.20133 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8914 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0551 -1.2225 -0.2719
9 7 1.3701 -2.3622 0.3463
10 6 0.2261 -2.3398 1.2681
11 6 0.4975 -3.3188 2.4146
12 6 0.8121 -4.7005 1.8367
13 9 -0.2664 -5.1372 1.0598
14 9 1.0296 -5.6043 2.8821
15 6 2.0675 -4.6172 0.9654
16 1 2.9024 -4.2534 1.5642
17 6 2.3998 -6.0053 0.4146
18 7 3.6640 -5.9480 -0.3236
19 6 4.1580 -7.0609 -0.9014
20 8 3.5563 -8.1100 -0.8097
21 6 5.4582 -7.0018 -1.6612
22 6 5.7855 -8.3691 -2.2036
23 6 5.3400 -8.7512 -3.4600
24 6 5.6656 -10.0184 -3.9183
25 6 6.4185 -10.8528 -3.1137
26 7 6.8252 -10.4557 -1.9239
27 6 6.5387 -9.2557 -1.4579
28 6 1.8139 -3.6529 -0.1976
29 1 -0.4850 0.8401 -0.0004
30 1 -0.6770 -2.6405 0.7370
31 1 0.0992 -1.3341 1.6687
32 1 -0.3830 -3.3837 3.0538
33 1 1.3473 -2.9672 2.9998
34 1 2.4928 -6.7111 1.2400
35 1 1.6031 -6.3313 -0.2541
36 1 4.1450 -5.1089 -0.3972
37 1 5.3649 -6.2959 -2.4865
38 1 6.2551 -6.6760 -0.9927
39 1 4.7533 -8.0776 -4.0669
40 1 5.3350 -10.3495 -4.8918
41 1 6.6760 -11.8417 -3.4633
42 1 6.8936 -8.9640 -0.4805
43 1 2.7345 -3.5135 -0.7641
44 1 1.0402 -4.0606 -0.8483
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699890408.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:07:33
Heat of formation + Delta-G solvation = -86.662841 kcal
Electronic energy + Delta-G solvation = -29482.050294 eV
Core-core repulsion = 25070.295010 eV
Total energy + Delta-G solvation = -4411.755284 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-48.56406 -46.51618 -40.59892 -39.43715 -37.41981 -35.07219 -33.78010 -32.74881
-32.12306 -30.97443 -30.27923 -28.30879 -25.60338 -25.14832 -23.77789 -22.90315
-22.34413 -21.43871 -20.49409 -19.58717 -17.61028 -17.27578 -16.91588 -16.83181
-16.69150 -16.36714 -15.71208 -15.50604 -15.42816 -14.92008 -14.84804 -14.24070
-14.16362 -13.67488 -13.57477 -13.41749 -13.28364 -13.25147 -13.17126 -13.05335
-12.83009 -12.35280 -12.24789 -11.83063 -11.72761 -11.62069 -11.56616 -11.28468
-10.88916 -10.67784 -10.55742 -10.17307 -10.12637 -9.96404 -9.92413 -9.71490
-9.65070 -9.16274 -9.07878 -8.66860 -6.95037 -5.98879 -3.44119 0.87986
1.09439 2.56769 3.05768 3.25523 3.33957 3.35558 3.66428 4.16686
4.19066 4.32332 4.42839 4.55678 4.56801 4.63435 4.75702 4.78062
4.82018 4.85660 5.08823 5.16339 5.17693 5.22955 5.36590 5.41946
5.49897 5.54876 5.60029 5.86682 5.88678 5.95912 6.01676 6.10917
6.22277 6.26765 6.35123 6.38212 6.48007 6.63482 7.05501 7.40160
7.43287 7.60279 7.76905 8.15659 8.21554 8.97514 9.60036 10.15412
11.10204
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.014100 B = 0.002682 C = 0.002372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1985.281899 B =10437.486198 C =11801.515520
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.007 3.993
3 Si 0.905 3.095
4 H -0.276 1.276
5 H -0.289 1.289
6 H -0.288 1.288
7 C -0.262 4.262
8 H 0.070 0.930
9 N -0.590 5.590
10 C 0.170 3.830
11 C -0.179 4.179
12 C 0.300 3.700
13 F -0.199 7.199
14 F -0.213 7.213
15 C -0.155 4.155
16 H 0.102 0.898
17 C 0.125 3.875
18 N -0.722 5.722
19 C 0.513 3.487
20 O -0.536 6.536
21 C -0.100 4.100
22 C -0.114 4.114
23 C -0.061 4.061
24 C -0.172 4.172
25 C 0.094 3.906
26 N -0.485 5.485
27 C 0.112 3.888
28 C 0.153 3.847
29 H 0.257 0.743
30 H 0.032 0.968
31 H 0.101 0.899
32 H 0.076 0.924
33 H 0.086 0.914
34 H 0.071 0.929
35 H 0.074 0.926
36 H 0.404 0.596
37 H 0.108 0.892
38 H 0.108 0.892
39 H 0.133 0.867
40 H 0.134 0.866
41 H 0.154 0.846
42 H 0.153 0.847
43 H 0.065 0.935
44 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.370 -12.781 -3.064 16.742
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.193 4.193
3 Si 0.734 3.266
4 H -0.201 1.201
5 H -0.216 1.216
6 H -0.214 1.214
7 C -0.391 4.391
8 H 0.087 0.913
9 N -0.312 5.312
10 C 0.044 3.956
11 C -0.219 4.219
12 C 0.263 3.737
13 F -0.180 7.180
14 F -0.194 7.194
15 C -0.177 4.177
16 H 0.120 0.880
17 C 0.001 3.999
18 N -0.375 5.375
19 C 0.299 3.701
20 O -0.412 6.412
21 C -0.141 4.141
22 C -0.117 4.117
23 C -0.087 4.087
24 C -0.191 4.191
25 C -0.063 4.063
26 N -0.194 5.194
27 C -0.045 4.045
28 C 0.026 3.974
29 H 0.067 0.933
30 H 0.051 0.949
31 H 0.119 0.881
32 H 0.095 0.905
33 H 0.104 0.896
34 H 0.089 0.911
35 H 0.093 0.907
36 H 0.240 0.760
37 H 0.126 0.874
38 H 0.126 0.874
39 H 0.151 0.849
40 H 0.152 0.848
41 H 0.171 0.829
42 H 0.170 0.830
43 H 0.084 0.916
44 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 10.285 -13.981 -2.492 17.534
hybrid contribution -0.144 1.735 -0.466 1.802
sum 10.141 -12.246 -2.958 16.172
Atomic orbital electron populations
1.70027 1.05347 1.25854 1.52923 1.25104 0.95322 0.98669 1.00190
0.86196 0.79320 0.83614 0.77422 1.20141 1.21584 1.21408 1.19177
0.92642 0.84403 1.42889 0.91265 1.44099 1.35765 1.01488 1.49856
1.20843 0.89376 0.98121 0.87273 1.23273 1.03385 0.92952 1.02261
1.21032 0.84870 0.87506 0.80266 1.92968 1.58127 1.91121 1.75810
1.92958 1.95168 1.71226 1.60096 1.22972 0.97129 0.96910 1.00650
0.87980 1.21318 0.85833 0.96418 0.96310 1.45953 1.24695 1.11931
1.54885 1.20440 0.86663 0.83711 0.79306 1.90741 1.60682 1.29753
1.60016 1.20616 0.96459 0.95545 1.01436 1.20302 0.99352 0.96582
0.95437 1.21476 0.96048 0.96246 0.94973 1.22114 1.00361 0.94973
1.01696 1.22751 0.94133 0.99598 0.89834 1.67679 1.21092 1.16394
1.14200 1.22597 0.94288 0.88680 0.98906 1.20907 0.98891 0.86319
0.91266 0.93333 0.94948 0.88136 0.90527 0.89560 0.91056 0.90724
0.76041 0.87369 0.87381 0.84863 0.84765 0.82883 0.83019 0.91616
0.94997
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.36 11.20 55.49 0.62 -23.74 16
2 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16
3 Si 0.91 20.06 29.59 -169.99 -5.03 15.03 16
4 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16
5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16
7 C -0.26 -6.46 9.58 -15.06 -0.14 -6.60 16
8 H 0.07 1.64 7.88 -52.49 -0.41 1.23 16
9 N -0.59 -13.25 2.99 -172.32 -0.52 -13.77 16
10 C 0.17 3.73 5.10 -3.71 -0.02 3.71 16
11 C -0.18 -3.19 5.62 -26.61 -0.15 -3.34 16
12 C 0.30 5.19 1.63 -26.69 -0.04 5.14 16
13 F -0.20 -3.77 15.73 2.25 0.04 -3.73 16
14 F -0.21 -3.63 16.41 2.25 0.04 -3.60 16
15 C -0.16 -2.42 2.03 -90.50 -0.18 -2.61 16
16 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16
17 C 0.13 1.81 4.83 -4.04 -0.02 1.79 16
18 N -0.72 -8.48 5.33 -60.29 -0.32 -8.80 16
19 C 0.51 6.31 7.82 -10.98 -0.09 6.23 16
20 O -0.54 -8.95 16.03 5.56 0.09 -8.86 16
21 C -0.10 -0.83 5.86 -29.03 -0.17 -1.00 16
22 C -0.11 -1.16 4.39 -104.48 -0.46 -1.62 16
23 C -0.06 -0.59 9.86 -39.27 -0.39 -0.98 16
24 C -0.17 -1.51 10.11 -39.44 -0.40 -1.91 16
25 C 0.09 0.91 11.18 -17.55 -0.20 0.71 16
26 N -0.49 -5.76 10.36 -13.25 -0.14 -5.90 16
27 C 0.11 1.23 10.86 -17.55 -0.19 1.04 16
28 C 0.15 2.81 5.40 -3.71 -0.02 2.79 16
29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16
30 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16
31 H 0.10 2.45 6.06 -51.93 -0.31 2.14 16
32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16
33 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16
34 H 0.07 1.08 7.63 -51.93 -0.40 0.69 16
35 H 0.07 1.19 7.97 -51.93 -0.41 0.78 16
36 H 0.40 3.85 7.70 -40.82 -0.31 3.53 16
37 H 0.11 0.68 8.10 -51.93 -0.42 0.26 16
38 H 0.11 0.63 8.09 -51.93 -0.42 0.21 16
39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16
41 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16
42 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16
43 H 0.07 1.09 7.13 -51.93 -0.37 0.72 16
44 H 0.03 0.64 7.92 -51.93 -0.41 0.22 16
LS Contribution 369.52 15.07 5.57 5.57
Total: -1.00 -31.78 369.52 -8.19 -39.97
By element:
Atomic # 1 Polarization: 10.37 SS G_CDS: -5.98 Total: 4.38 kcal
Atomic # 6 Polarization: 5.98 SS G_CDS: -2.55 Total: 3.43 kcal
Atomic # 7 Polarization: -51.85 SS G_CDS: -0.35 Total: -52.20 kcal
Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal
Atomic # 9 Polarization: -7.40 SS G_CDS: 0.07 Total: -7.33 kcal
Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -31.78 -8.19 -39.97 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699890408.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.692 kcal
(2) G-P(sol) polarization free energy of solvation -31.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.663 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds