Wall clock time and date at job start Tue Mar 31 2020 23:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47009 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.46946 * 179.97438 * 18 17 15 20 20 N 1.46507 * 109.46890 * 179.97438 * 19 18 17 21 21 C 1.33872 * 122.76564 * 269.70798 * 20 19 18 22 22 O 1.21227 * 125.39723 * 359.97438 * 21 20 19 23 23 C 1.51316 * 109.20755 * 179.84417 * 21 20 19 24 24 C 1.54225 * 103.55359 * 0.39059 * 23 21 20 25 25 C 1.33881 * 122.75797 * 90.00541 * 20 19 18 26 26 O 1.21227 * 125.39811 * 359.97346 * 25 20 19 27 27 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 28 28 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 29 29 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 30 30 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 31 31 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 32 32 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 33 33 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 34 34 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 35 35 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 36 36 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 37 37 H 1.09001 * 109.47194 * 300.00184 * 18 17 15 38 38 H 1.08998 * 109.47177 * 59.99794 * 18 17 15 39 39 H 1.08989 * 109.47588 * 299.99791 * 19 18 17 40 40 H 1.09000 * 109.46893 * 60.00314 * 19 18 17 41 41 H 1.09001 * 110.79674 * 241.78421 * 23 21 20 42 42 H 1.08997 * 110.54590 * 118.88077 * 23 21 20 43 43 H 1.09006 * 110.60731 * 241.26144 * 24 23 21 44 44 H 1.08997 * 110.60809 * 118.29703 * 24 23 21 45 45 H 1.09007 * 113.46852 * 321.86298 * 27 9 7 46 46 H 1.08998 * 113.47074 * 92.24182 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 6 11.1759 0.9333 -0.0259 19 6 12.0741 1.9366 0.7004 20 7 13.3940 1.9595 0.0650 21 6 14.3969 1.1602 0.4490 22 8 14.3408 0.3431 1.3428 23 6 15.6107 1.4359 -0.4114 24 6 15.1333 2.5520 -1.3628 25 6 13.6982 2.7856 -0.9436 26 8 12.9435 3.5926 -1.4424 27 6 4.4122 -2.2289 -0.3444 28 1 -0.4850 -0.8367 0.0747 29 1 4.6580 0.1320 -1.2487 30 1 4.2791 0.6438 0.4515 31 1 6.0897 -0.7211 2.1329 32 1 7.2300 -2.2223 -0.3082 33 1 6.6788 -0.9331 -1.4048 34 1 7.3006 0.2288 1.0931 35 1 9.3513 1.9019 0.5844 36 1 9.9020 0.6133 1.6819 37 1 11.6224 -0.0597 0.0273 38 1 11.0712 1.2291 -1.0697 39 1 11.6275 2.9293 0.6468 40 1 12.1789 1.6411 1.7443 41 1 15.8955 0.5474 -0.9749 42 1 16.4427 1.7836 0.2009 43 1 15.1806 2.2187 -2.3995 44 1 15.7261 3.4558 -1.2219 45 1 4.2426 -3.1304 0.2445 46 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699918327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:53 Heat of formation + Delta-G solvation = -82.740820 kcal Electronic energy + Delta-G solvation = -28924.213676 eV Core-core repulsion = 24623.715979 eV Total energy + Delta-G solvation = -4300.497697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36523 -40.19754 -39.08651 -39.05008 -36.45769 -35.48382 -35.20631 -34.19182 -32.60133 -32.26986 -29.31386 -27.64106 -26.73099 -25.72867 -25.56063 -22.94316 -22.90184 -21.41767 -20.63589 -19.99864 -19.65325 -18.16167 -17.65630 -17.52110 -17.18473 -17.00989 -16.45539 -16.16480 -15.88212 -15.29010 -15.02968 -14.73992 -14.68501 -14.52110 -14.42533 -14.28531 -13.91678 -13.65221 -13.39808 -13.31531 -13.17976 -12.88913 -12.68335 -12.46529 -12.19875 -12.02701 -11.98298 -11.64797 -11.24360 -11.10959 -11.03666 -10.56976 -10.54325 -10.36663 -10.29663 -10.11767 -9.94351 -9.29141 -9.22453 -8.95595 -8.88235 -7.17807 -6.33119 -3.23471 0.99079 1.96307 2.18360 2.48270 2.97226 3.35244 3.40211 3.50472 3.61522 3.64123 3.83123 4.18999 4.22787 4.34331 4.42912 4.46802 4.56266 4.57132 4.73846 4.83799 4.86029 4.89141 4.95356 4.97254 5.00194 5.02084 5.14511 5.23288 5.46935 5.51210 5.58669 5.80235 5.82819 6.01619 6.09101 6.12401 6.27806 6.30292 6.31825 6.50170 6.78723 7.05488 7.24553 7.26782 7.81060 8.05187 8.22551 8.96347 9.47962 10.32084 11.19735 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.001952 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.189442 B =14342.922525 C =14963.343226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.027 4.027 3 Si 1.074 2.926 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.300 4.300 8 H 0.084 0.916 9 N -0.618 5.618 10 C 0.077 3.923 11 C 0.070 3.930 12 O -0.518 6.518 13 C 0.105 3.895 14 N -0.728 5.728 15 C 0.515 3.485 16 O -0.539 6.539 17 C -0.138 4.138 18 C -0.118 4.118 19 C 0.097 3.903 20 N -0.574 5.574 21 C 0.525 3.475 22 O -0.479 6.479 23 C -0.158 4.158 24 C -0.158 4.158 25 C 0.525 3.475 26 O -0.478 6.478 27 C 0.139 3.861 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.362 0.638 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.398 0.602 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.057 0.943 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.279 6.017 0.970 35.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.225 4.225 3 Si 0.907 3.093 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.215 1.215 7 C -0.426 4.426 8 H 0.102 0.898 9 N -0.345 5.345 10 C -0.049 4.049 11 C 0.027 3.973 12 O -0.322 6.322 13 C -0.019 4.019 14 N -0.382 5.382 15 C 0.301 3.699 16 O -0.416 6.416 17 C -0.179 4.179 18 C -0.157 4.157 19 C -0.024 4.024 20 N -0.317 5.317 21 C 0.314 3.686 22 O -0.350 6.350 23 C -0.197 4.197 24 C -0.197 4.197 25 C 0.314 3.686 26 O -0.348 6.348 27 C 0.012 3.988 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.208 0.792 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.075 0.925 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 34.146 6.719 0.373 34.803 hybrid contribution 0.261 -1.034 0.537 1.194 sum 34.407 5.685 0.909 34.886 Atomic orbital electron populations 1.70917 1.05242 1.29459 1.52033 1.25738 0.96496 1.00956 0.99321 0.83646 0.73804 0.75974 0.75895 1.22211 1.22292 1.21514 1.20119 0.78199 0.95878 1.48383 0.89836 1.45700 1.02140 1.01409 1.85256 1.23494 0.88461 0.94250 0.98680 1.23314 0.91049 1.01165 0.81744 1.86689 1.65248 1.62789 1.17443 1.21950 0.89538 0.93185 0.97252 1.45980 1.12759 1.44092 1.35365 1.20546 0.81931 0.83213 0.84181 1.90718 1.73919 1.48742 1.28242 1.21562 0.95110 1.00091 1.01146 1.21621 0.93387 1.00109 1.00583 1.21855 0.80699 1.01953 0.97905 1.46769 1.14490 1.36491 1.33952 1.20861 0.85385 0.79065 0.83254 1.90804 1.83019 1.31975 1.29219 1.22483 0.97471 1.01404 0.98377 1.22489 0.93171 1.01401 1.02669 1.20875 0.90602 0.78959 0.78203 1.90812 1.55906 1.33366 1.54761 1.22336 0.85714 0.93753 0.96997 0.92900 0.92872 0.92690 0.79155 0.90513 0.89946 0.76750 0.88203 0.88265 0.90430 0.90388 0.88561 0.88589 0.85991 0.86115 0.85997 0.86082 0.92479 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.85 13.70 55.49 0.76 -29.08 16 2 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16 3 Si 1.07 26.94 25.13 -169.99 -4.27 22.66 16 4 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 5 H -0.29 -6.94 6.64 56.52 0.38 -6.56 16 6 H -0.29 -6.69 6.13 56.52 0.35 -6.34 16 7 C -0.30 -8.82 11.08 -15.06 -0.17 -8.99 16 8 H 0.08 2.59 8.05 -52.48 -0.42 2.17 16 9 N -0.62 -15.40 3.69 -184.62 -0.68 -16.08 16 10 C 0.08 1.59 5.13 -8.39 -0.04 1.55 16 11 C 0.07 1.18 1.74 -89.97 -0.16 1.02 16 12 O -0.52 -8.61 13.56 -35.23 -0.48 -9.09 16 13 C 0.11 1.44 5.43 -4.04 -0.02 1.41 16 14 N -0.73 -7.96 5.34 -60.29 -0.32 -8.29 16 15 C 0.51 5.94 7.83 -10.98 -0.09 5.85 16 16 O -0.54 -8.43 15.98 5.56 0.09 -8.34 16 17 C -0.14 -1.02 5.70 -27.88 -0.16 -1.18 16 18 C -0.12 -1.01 4.83 -26.73 -0.13 -1.13 16 19 C 0.10 0.66 5.56 -4.04 -0.02 0.63 16 20 N -0.57 -3.92 2.55 -115.34 -0.29 -4.22 16 21 C 0.53 3.46 8.08 -11.09 -0.09 3.37 16 22 O -0.48 -4.89 17.47 5.60 0.10 -4.79 16 23 C -0.16 -0.32 7.03 -26.94 -0.19 -0.51 16 24 C -0.16 -0.33 7.03 -26.94 -0.19 -0.52 16 25 C 0.52 3.53 8.08 -11.08 -0.09 3.44 16 26 O -0.48 -5.01 17.48 5.60 0.10 -4.91 16 27 C 0.14 2.76 8.10 -8.52 -0.07 2.69 16 28 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 29 H 0.05 1.07 7.50 -51.93 -0.39 0.68 16 30 H 0.06 1.17 4.67 -51.93 -0.24 0.92 16 31 H 0.36 4.13 7.21 45.56 0.33 4.46 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.40 3.31 6.95 -40.82 -0.28 3.03 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.36 16 38 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.10 0.60 7.83 -51.93 -0.41 0.19 16 40 H 0.10 0.58 7.82 -51.93 -0.41 0.17 16 41 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.12 0.11 8.14 -51.93 -0.42 -0.32 16 44 H 0.12 0.03 8.14 -51.93 -0.42 -0.39 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -41.06 381.98 -6.86 -47.92 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.11 Total: 1.71 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.51 Total: 6.75 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.54 Total: -57.67 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.19 Total: -27.13 kcal Atomic # 14 Polarization: 26.94 SS G_CDS: -4.27 Total: 22.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -41.06 -6.86 -47.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699918327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.817 kcal (2) G-P(sol) polarization free energy of solvation -41.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds