Wall clock time and date at job start Tue Mar 31 2020 23:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47009 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.46946 * 179.97438 * 18 17 15 20 20 N 1.46507 * 109.46890 * 179.97438 * 19 18 17 21 21 C 1.33872 * 122.76564 * 269.70798 * 20 19 18 22 22 O 1.21227 * 125.39723 * 359.97438 * 21 20 19 23 23 C 1.51316 * 109.20755 * 179.84417 * 21 20 19 24 24 C 1.54225 * 103.55359 * 0.39059 * 23 21 20 25 25 C 1.33881 * 122.75797 * 90.00541 * 20 19 18 26 26 O 1.21227 * 125.39811 * 359.97346 * 25 20 19 27 27 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 28 28 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 29 29 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 30 30 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 31 31 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 32 32 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 33 33 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 34 34 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 35 35 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 36 36 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 37 37 H 1.09001 * 109.47194 * 300.00184 * 18 17 15 38 38 H 1.08998 * 109.47177 * 59.99794 * 18 17 15 39 39 H 1.08989 * 109.47588 * 299.99791 * 19 18 17 40 40 H 1.09000 * 109.46893 * 60.00314 * 19 18 17 41 41 H 1.09001 * 110.79674 * 241.78421 * 23 21 20 42 42 H 1.08997 * 110.54590 * 118.88077 * 23 21 20 43 43 H 1.09006 * 110.60731 * 241.26144 * 24 23 21 44 44 H 1.08997 * 110.60809 * 118.29703 * 24 23 21 45 45 H 1.09007 * 113.46852 * 321.86298 * 27 9 7 46 46 H 1.08998 * 113.47074 * 92.24182 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 6 11.1759 0.9333 -0.0259 19 6 12.0741 1.9366 0.7004 20 7 13.3940 1.9595 0.0650 21 6 14.3969 1.1602 0.4490 22 8 14.3408 0.3431 1.3428 23 6 15.6107 1.4359 -0.4114 24 6 15.1333 2.5520 -1.3628 25 6 13.6982 2.7856 -0.9436 26 8 12.9435 3.5926 -1.4424 27 6 4.4122 -2.2289 -0.3444 28 1 -0.4850 -0.8367 0.0747 29 1 4.6580 0.1320 -1.2487 30 1 4.2791 0.6438 0.4515 31 1 6.0897 -0.7211 2.1329 32 1 7.2300 -2.2223 -0.3082 33 1 6.6788 -0.9331 -1.4048 34 1 7.3006 0.2288 1.0931 35 1 9.3513 1.9019 0.5844 36 1 9.9020 0.6133 1.6819 37 1 11.6224 -0.0597 0.0273 38 1 11.0712 1.2291 -1.0697 39 1 11.6275 2.9293 0.6468 40 1 12.1789 1.6411 1.7443 41 1 15.8955 0.5474 -0.9749 42 1 16.4427 1.7836 0.2009 43 1 15.1806 2.2187 -2.3995 44 1 15.7261 3.4558 -1.2219 45 1 4.2426 -3.1304 0.2445 46 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699918327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:52 Heat of formation + Delta-G solvation = -118.391737 kcal Electronic energy + Delta-G solvation = -28925.759615 eV Core-core repulsion = 24623.715979 eV Total energy + Delta-G solvation = -4302.043637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.83238 -41.40329 -40.34781 -39.63368 -37.07450 -36.81201 -35.85010 -35.29438 -34.45229 -33.05730 -30.74605 -28.70101 -27.19345 -27.08127 -27.01076 -23.87487 -23.27788 -22.96348 -21.57354 -21.19954 -20.48397 -19.74488 -18.86753 -18.17404 -17.97351 -17.61955 -17.51336 -17.21709 -16.86389 -16.47941 -15.98574 -15.78087 -15.63280 -15.46189 -15.26822 -15.16234 -14.88314 -14.86476 -14.66180 -14.53211 -14.12443 -13.71454 -13.59761 -13.38907 -13.35171 -12.98007 -12.84546 -12.82210 -12.40174 -12.10488 -11.92311 -11.88802 -11.79476 -11.61950 -11.35684 -11.06575 -11.05679 -11.02368 -10.80606 -10.64789 -10.18112 -9.24135 -8.69367 -5.50169 0.50639 1.33922 1.46515 1.51608 1.60222 1.66049 1.73605 2.08082 2.52588 2.85347 2.93695 3.15804 3.23988 3.27476 3.30225 3.63490 3.64865 3.74502 3.85140 3.85715 4.16345 4.22535 4.26848 4.37012 4.40461 4.46029 4.54362 4.58448 4.62017 4.64831 4.74495 4.77169 4.78725 4.91141 4.94726 4.95296 4.99898 5.12417 5.14780 5.29591 5.83883 5.90636 6.32563 6.42284 6.65726 6.74189 6.75934 7.18324 7.28096 8.21067 8.86302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023036 B = 0.001952 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.189442 B =14342.922525 C =14963.343226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.090 4.090 3 Si 1.114 2.886 4 H -0.305 1.305 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.290 4.290 8 H 0.046 0.954 9 N -0.654 5.654 10 C 0.069 3.931 11 C 0.107 3.893 12 O -0.535 6.535 13 C 0.120 3.880 14 N -0.719 5.719 15 C 0.513 3.487 16 O -0.585 6.585 17 C -0.130 4.130 18 C -0.110 4.110 19 C 0.095 3.905 20 N -0.581 5.581 21 C 0.519 3.481 22 O -0.522 6.522 23 C -0.144 4.144 24 C -0.145 4.145 25 C 0.518 3.482 26 O -0.523 6.523 27 C 0.127 3.873 28 H 0.245 0.755 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.387 0.613 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.413 0.587 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.147 0.853 45 H 0.048 0.952 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.451 7.636 1.288 40.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.281 4.281 3 Si 0.939 3.061 4 H -0.234 1.234 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.418 4.418 8 H 0.064 0.936 9 N -0.382 5.382 10 C -0.056 4.056 11 C 0.064 3.936 12 O -0.343 6.343 13 C -0.006 4.006 14 N -0.374 5.374 15 C 0.302 3.698 16 O -0.465 6.465 17 C -0.170 4.170 18 C -0.149 4.149 19 C -0.026 4.026 20 N -0.323 5.323 21 C 0.311 3.689 22 O -0.396 6.396 23 C -0.183 4.183 24 C -0.184 4.184 25 C 0.310 3.690 26 O -0.397 6.397 27 C 0.002 3.998 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.251 0.749 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.067 0.933 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 38.398 8.322 0.718 39.296 hybrid contribution -1.012 -1.685 0.460 2.019 sum 37.386 6.637 1.178 37.989 Atomic orbital electron populations 1.71031 1.06644 1.28542 1.55289 1.27223 0.96537 1.04861 0.99453 0.83215 0.73340 0.71369 0.78157 1.23364 1.19496 1.18257 1.19959 0.80931 0.94428 1.46433 0.93589 1.45775 1.01487 1.05059 1.85886 1.23758 0.87782 0.94424 0.99627 1.22701 0.91628 0.97359 0.81960 1.86648 1.66542 1.63848 1.17224 1.21621 0.87872 0.94225 0.96875 1.45851 1.12384 1.43575 1.35552 1.21225 0.81993 0.83051 0.83576 1.90708 1.74751 1.50619 1.30393 1.21613 0.93384 1.00163 1.01862 1.21486 0.94512 0.99259 0.99623 1.21849 0.80959 1.01701 0.98131 1.46988 1.14622 1.36623 1.34067 1.21685 0.86475 0.77876 0.82857 1.90779 1.83856 1.33724 1.31285 1.22595 0.95835 1.02124 0.97789 1.22602 0.89803 1.02548 1.03405 1.21710 0.92176 0.77766 0.77338 1.90786 1.57593 1.35226 1.56084 1.22637 0.85254 0.93380 0.98573 0.94627 0.91514 0.92637 0.76285 0.90182 0.90142 0.74901 0.85620 0.85280 0.92592 0.92787 0.87913 0.87740 0.84187 0.83480 0.84251 0.83485 0.93311 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.10 13.70 21.65 0.30 -63.80 16 2 C -0.09 -5.49 5.50 84.86 0.47 -5.03 16 3 Si 1.11 53.45 25.13 68.60 1.72 55.18 16 4 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 5 H -0.27 -11.61 6.64 99.48 0.66 -10.95 16 6 H -0.26 -10.95 6.13 99.48 0.61 -10.34 16 7 C -0.29 -17.46 11.08 84.03 0.93 -16.53 16 8 H 0.05 3.01 8.05 -2.91 -0.02 2.99 16 9 N -0.65 -32.12 3.69 -738.49 -2.73 -34.85 16 10 C 0.07 2.65 5.13 83.26 0.43 3.07 16 11 C 0.11 3.28 1.74 -10.37 -0.02 3.27 16 12 O -0.54 -16.16 13.56 -148.98 -2.02 -18.18 16 13 C 0.12 2.90 5.43 86.38 0.47 3.36 16 14 N -0.72 -13.24 5.34 -463.06 -2.47 -15.71 16 15 C 0.51 10.59 7.83 87.66 0.69 11.28 16 16 O -0.58 -17.62 15.98 -3.03 -0.05 -17.67 16 17 C -0.13 -1.56 5.70 29.85 0.17 -1.39 16 18 C -0.11 -1.77 4.83 30.59 0.15 -1.62 16 19 C 0.09 1.18 5.56 86.38 0.48 1.66 16 20 N -0.58 -7.29 2.55 -756.66 -1.93 -9.23 16 21 C 0.52 6.08 8.08 87.99 0.71 6.80 16 22 O -0.52 -10.30 17.47 -2.87 -0.05 -10.35 16 23 C -0.14 -0.12 7.03 30.46 0.21 0.10 16 24 C -0.14 -0.14 7.03 30.46 0.21 0.07 16 25 C 0.52 6.25 8.08 87.99 0.71 6.96 16 26 O -0.52 -10.67 17.48 -2.87 -0.05 -10.72 16 27 C 0.13 4.89 8.10 83.17 0.67 5.57 16 28 H 0.24 16.30 8.73 -92.71 -0.81 15.49 16 29 H 0.07 2.43 7.50 -2.39 -0.02 2.41 16 30 H 0.06 2.14 4.67 -2.39 -0.01 2.13 16 31 H 0.39 7.23 7.21 -74.06 -0.53 6.70 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.06 7.89 -2.39 -0.02 2.04 16 34 H 0.41 5.06 6.95 -92.71 -0.64 4.42 16 35 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.10 1.13 7.83 -2.39 -0.02 1.11 16 40 H 0.10 1.11 7.82 -2.39 -0.02 1.09 16 41 H 0.14 -0.30 8.14 -2.39 -0.02 -0.31 16 42 H 0.15 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.14 -0.25 8.14 -2.38 -0.02 -0.27 16 44 H 0.15 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 Total: -1.00 -94.99 381.98 -1.33 -96.32 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -0.33 Total: 11.45 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.28 Total: 17.56 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.84 Total: -123.58 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -2.17 Total: -56.92 kcal Atomic # 14 Polarization: 53.45 SS G_CDS: 1.72 Total: 55.18 kcal Total: -94.99 -1.33 -96.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699918327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.069 kcal (2) G-P(sol) polarization free energy of solvation -94.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds