Wall clock time and date at job start Tue Mar 31 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47494 * 2 1 4 4 N 1.28603 * 124.61974 * 270.00404 * 3 2 1 5 5 C 1.31383 * 108.71754 * 179.71827 * 4 3 2 6 6 C 1.39671 * 105.90057 * 0.41827 * 5 4 3 7 7 C 1.50698 * 127.05189 * 179.84027 * 6 5 4 8 8 N 1.46904 * 109.47048 * 94.71657 * 7 6 5 9 9 C 1.46898 * 110.99913 * 180.02562 * 8 7 6 10 10 H 1.09004 * 112.85240 * 336.18794 * 9 8 7 11 11 C 1.53778 * 113.61883 * 107.50322 * 9 8 7 12 12 C 1.53778 * 87.08449 * 139.97809 * 11 9 8 13 13 H 1.08993 * 113.61229 * 220.02023 * 12 11 9 14 14 N 1.46501 * 113.61560 * 89.11214 * 12 11 9 15 15 C 1.34781 * 119.99552 * 107.49938 * 14 12 11 16 16 O 1.21273 * 120.00172 * 0.02562 * 15 14 12 17 17 C 1.50702 * 119.99750 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.47197 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00068 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00049 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99991 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00022 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47191 * 60.00335 * 23 21 19 25 25 H 1.48501 * 109.46959 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47483 * 299.99807 * 23 21 19 27 27 C 1.53784 * 87.08081 * 334.56700 * 12 11 9 28 28 N 1.28601 * 124.62133 * 89.99317 * 3 2 1 29 29 H 1.09004 * 109.46381 * 59.99946 * 1 2 3 30 30 H 1.08993 * 109.47571 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47277 * 300.00540 * 1 2 3 32 32 H 1.09000 * 109.46862 * 239.99708 * 2 1 3 33 33 H 1.09003 * 109.46815 * 120.00365 * 2 1 3 34 34 H 1.07996 * 127.04713 * 180.26583 * 5 4 3 35 35 H 1.08999 * 109.47110 * 334.71488 * 7 6 5 36 36 H 1.09001 * 109.47549 * 214.71694 * 7 6 5 37 37 H 1.00905 * 110.99615 * 303.95248 * 8 7 6 38 38 H 1.08999 * 113.61111 * 254.52872 * 11 9 8 39 39 H 1.08999 * 113.61280 * 25.34255 * 11 9 8 40 40 H 0.96998 * 120.00259 * 287.50678 * 14 12 11 41 41 H 1.09000 * 109.47285 * 300.00722 * 17 15 14 42 42 H 1.08993 * 109.46779 * 60.00471 * 17 15 14 43 43 H 0.96994 * 119.99712 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.61451 * 270.88641 * 27 12 11 45 45 H 1.08994 * 113.61477 * 139.97943 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2620 2.0700 -1.0583 5 6 2.6775 3.2633 -0.6983 6 6 2.6831 3.2613 0.6984 7 6 3.0841 4.3952 1.6064 8 7 1.8892 5.1546 1.9982 9 6 2.2425 6.2710 2.8853 10 1 3.1822 6.1106 3.4139 11 6 2.1400 7.6495 2.2116 12 6 1.5458 8.1640 3.5333 13 1 0.7212 8.8639 3.3982 14 7 2.5533 8.6459 4.4815 15 6 2.6827 9.9672 4.7135 16 8 1.9649 10.7572 4.1378 17 6 3.7187 10.4629 5.6893 18 16 3.6450 12.2691 5.7819 19 6 4.9233 12.5676 6.9573 20 1 5.4731 11.7393 7.3792 21 6 5.2229 13.8672 7.3416 22 7 4.5524 14.8767 6.8277 23 14 6.5776 14.1837 8.5882 24 1 7.8644 13.6587 8.0649 25 1 6.6997 15.6443 8.8264 26 1 6.2461 13.4997 9.8639 27 6 1.0903 6.7195 3.7997 28 7 2.2619 2.0700 1.0583 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9594 4.0777 -1.3491 35 1 3.7770 5.0531 1.0818 36 1 3.5678 3.9939 2.4970 37 1 1.3872 5.4829 1.1868 38 1 3.1070 8.0890 1.9672 39 1 1.4397 7.6765 1.3767 40 1 3.1272 8.0140 4.9421 41 1 3.5214 10.0405 6.6746 42 1 4.7095 10.1561 5.3543 43 1 4.7621 15.7849 7.0961 44 1 0.1019 6.4926 3.3999 45 1 1.2099 6.4084 4.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713154675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:38 Heat of formation + Delta-G solvation = 93.736115 kcal Electronic energy + Delta-G solvation = -25246.549077 eV Core-core repulsion = 21428.749616 eV Total energy + Delta-G solvation = -3817.799461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.89920 -40.17738 -38.28049 -35.95332 -34.66540 -32.98219 -32.42975 -32.36208 -30.61394 -29.00781 -26.66088 -25.85602 -25.48366 -24.52698 -23.31217 -22.24565 -21.28958 -20.75509 -19.49246 -17.84435 -17.78037 -16.91552 -16.57439 -16.12436 -15.88905 -15.45374 -15.41045 -14.93630 -14.80057 -14.69477 -14.35183 -14.01906 -13.83555 -13.42635 -13.17863 -13.05918 -12.82692 -12.76221 -12.61268 -12.56902 -12.01797 -11.97095 -11.84748 -11.50426 -11.11061 -11.04350 -11.03733 -10.89236 -10.76785 -10.64214 -10.47418 -9.82061 -9.60850 -9.40742 -9.06028 -8.91773 -8.65233 -8.23894 -6.49795 -6.21214 -3.91937 1.45840 1.90358 2.02165 3.01895 3.06682 3.23851 3.27857 3.31196 3.64748 3.70173 3.91017 4.20891 4.25461 4.27240 4.36130 4.41721 4.53158 4.59837 4.72601 4.78551 4.80158 4.97243 5.03345 5.12681 5.13823 5.14329 5.27817 5.44238 5.46492 5.53023 5.60637 5.66987 5.76471 5.80374 5.83006 5.84068 5.89267 6.02464 6.14009 6.33945 6.60420 6.77401 7.00378 7.59560 7.71415 7.99712 8.35306 8.61569 9.23980 10.86164 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031187 B = 0.001489 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.597073 B =18795.154315 C =19108.308605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.136 3.864 3 N -0.157 5.157 4 N -0.291 5.291 5 C -0.023 4.023 6 C 0.003 3.997 7 C 0.147 3.853 8 N -0.672 5.672 9 C 0.068 3.932 10 H 0.098 0.902 11 C -0.180 4.180 12 C 0.125 3.875 13 H 0.104 0.896 14 N -0.721 5.721 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.132 4.132 28 N -0.268 5.268 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.195 0.805 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.345 0.655 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.096 0.904 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 -30.575 -13.754 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.058 5.058 4 N -0.132 5.132 5 C -0.206 4.206 6 C -0.160 4.160 7 C 0.017 3.983 8 N -0.303 5.303 9 C -0.043 4.043 10 H 0.116 0.884 11 C -0.221 4.221 12 C 0.018 3.982 13 H 0.122 0.878 14 N -0.375 5.375 15 C 0.321 3.679 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.172 4.172 28 N -0.110 5.110 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.212 0.788 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.164 0.836 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.336 -30.825 -14.219 34.730 hybrid contribution 2.703 0.420 0.935 2.891 sum -4.633 -30.405 -13.284 33.502 Atomic orbital electron populations 1.22180 0.93058 1.03883 1.03790 1.21970 0.96112 0.74546 1.05669 1.48180 1.44942 1.13385 0.99315 1.74037 1.17248 1.05577 1.16323 1.24680 1.05253 0.95839 0.94790 1.23043 1.05124 0.94165 0.93686 1.20111 0.91785 0.89755 0.96676 1.60414 1.22542 1.25504 1.21848 1.23133 0.98670 0.87473 0.94980 0.88357 1.24163 1.02478 0.97272 0.98190 1.21599 0.92082 0.95545 0.88996 0.87811 1.45716 1.38679 1.07553 1.45537 1.20331 0.84039 0.81500 0.82074 1.90698 1.44333 1.54524 1.49400 1.23536 0.99724 1.06954 1.00233 1.85398 1.48802 0.91911 1.57184 1.22832 1.21696 0.95321 1.28657 0.90972 1.24985 0.96887 0.95016 0.96625 1.70008 1.39390 0.99209 1.41685 0.86228 0.81154 0.77361 0.80778 1.19955 1.20805 1.19934 1.23443 0.99515 0.93893 1.00304 1.74037 1.16086 1.05442 1.15465 0.91469 0.89599 0.91241 0.87510 0.87423 0.78801 0.92566 0.89272 0.83596 0.90838 0.89146 0.76807 0.89165 0.89228 0.92126 0.88543 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.24 37.16 0.38 -0.29 16 2 C 0.14 0.63 7.26 -4.04 -0.03 0.60 16 3 N -0.16 -1.37 3.95 -10.62 -0.04 -1.41 16 4 N -0.29 -2.75 12.05 30.67 0.37 -2.38 16 5 C -0.02 -0.19 12.16 -17.21 -0.21 -0.39 16 6 C 0.00 0.03 6.86 -82.25 -0.56 -0.54 16 7 C 0.15 1.06 6.12 -4.97 -0.03 1.03 16 8 N -0.67 -5.09 6.61 -107.13 -0.71 -5.80 16 9 C 0.07 0.52 4.06 -66.90 -0.27 0.25 16 10 H 0.10 0.72 7.87 -51.93 -0.41 0.31 16 11 C -0.18 -1.63 7.49 -25.92 -0.19 -1.83 16 12 C 0.12 1.39 4.32 -67.12 -0.29 1.10 16 13 H 0.10 1.39 7.47 -51.93 -0.39 1.00 16 14 N -0.72 -9.23 5.26 -53.02 -0.28 -9.51 16 15 C 0.53 9.76 7.85 -10.98 -0.09 9.68 16 16 O -0.52 -11.58 15.46 5.56 0.09 -11.49 16 17 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.13 -1.14 7.63 -25.91 -0.20 -1.33 16 28 N -0.27 -2.70 12.05 33.71 0.41 -2.29 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.20 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.34 2.44 8.18 -39.29 -0.32 2.12 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.73 7.82 -51.93 -0.41 0.32 16 40 H 0.40 3.95 8.70 -40.82 -0.36 3.59 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -36.73 397.09 -8.68 -45.41 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.92 Total: 1.87 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.07 Total: -7.48 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.48 Total: -46.78 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.73 -8.68 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713154675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.146 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds