Wall clock time and date at job start Tue Mar 31 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47494 * 2 1 4 4 N 1.28603 * 124.61974 * 270.00404 * 3 2 1 5 5 C 1.31383 * 108.71754 * 179.71827 * 4 3 2 6 6 C 1.39671 * 105.90057 * 0.41827 * 5 4 3 7 7 C 1.50698 * 127.05189 * 179.84027 * 6 5 4 8 8 N 1.46904 * 109.47048 * 94.71657 * 7 6 5 9 9 C 1.46898 * 110.99913 * 180.02562 * 8 7 6 10 10 H 1.09004 * 112.85240 * 336.18794 * 9 8 7 11 11 C 1.53778 * 113.61883 * 107.50322 * 9 8 7 12 12 C 1.53778 * 87.08449 * 139.97809 * 11 9 8 13 13 H 1.08993 * 113.61229 * 220.02023 * 12 11 9 14 14 N 1.46501 * 113.61560 * 89.11214 * 12 11 9 15 15 C 1.34781 * 119.99552 * 107.49938 * 14 12 11 16 16 O 1.21273 * 120.00172 * 0.02562 * 15 14 12 17 17 C 1.50702 * 119.99750 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.47197 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00068 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00049 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99991 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00022 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47191 * 60.00335 * 23 21 19 25 25 H 1.48501 * 109.46959 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47483 * 299.99807 * 23 21 19 27 27 C 1.53784 * 87.08081 * 334.56700 * 12 11 9 28 28 N 1.28601 * 124.62133 * 89.99317 * 3 2 1 29 29 H 1.09004 * 109.46381 * 59.99946 * 1 2 3 30 30 H 1.08993 * 109.47571 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47277 * 300.00540 * 1 2 3 32 32 H 1.09000 * 109.46862 * 239.99708 * 2 1 3 33 33 H 1.09003 * 109.46815 * 120.00365 * 2 1 3 34 34 H 1.07996 * 127.04713 * 180.26583 * 5 4 3 35 35 H 1.08999 * 109.47110 * 334.71488 * 7 6 5 36 36 H 1.09001 * 109.47549 * 214.71694 * 7 6 5 37 37 H 1.00905 * 110.99615 * 303.95248 * 8 7 6 38 38 H 1.08999 * 113.61111 * 254.52872 * 11 9 8 39 39 H 1.08999 * 113.61280 * 25.34255 * 11 9 8 40 40 H 0.96998 * 120.00259 * 287.50678 * 14 12 11 41 41 H 1.09000 * 109.47285 * 300.00722 * 17 15 14 42 42 H 1.08993 * 109.46779 * 60.00471 * 17 15 14 43 43 H 0.96994 * 119.99712 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.61451 * 270.88641 * 27 12 11 45 45 H 1.08994 * 113.61477 * 139.97943 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2620 2.0700 -1.0583 5 6 2.6775 3.2633 -0.6983 6 6 2.6831 3.2613 0.6984 7 6 3.0841 4.3952 1.6064 8 7 1.8892 5.1546 1.9982 9 6 2.2425 6.2710 2.8853 10 1 3.1822 6.1106 3.4139 11 6 2.1400 7.6495 2.2116 12 6 1.5458 8.1640 3.5333 13 1 0.7212 8.8639 3.3982 14 7 2.5533 8.6459 4.4815 15 6 2.6827 9.9672 4.7135 16 8 1.9649 10.7572 4.1378 17 6 3.7187 10.4629 5.6893 18 16 3.6450 12.2691 5.7819 19 6 4.9233 12.5676 6.9573 20 1 5.4731 11.7393 7.3792 21 6 5.2229 13.8672 7.3416 22 7 4.5524 14.8767 6.8277 23 14 6.5776 14.1837 8.5882 24 1 7.8644 13.6587 8.0649 25 1 6.6997 15.6443 8.8264 26 1 6.2461 13.4997 9.8639 27 6 1.0903 6.7195 3.7997 28 7 2.2619 2.0700 1.0583 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9594 4.0777 -1.3491 35 1 3.7770 5.0531 1.0818 36 1 3.5678 3.9939 2.4970 37 1 1.3872 5.4829 1.1868 38 1 3.1070 8.0890 1.9672 39 1 1.4397 7.6765 1.3767 40 1 3.1272 8.0140 4.9421 41 1 3.5214 10.0405 6.6746 42 1 4.7095 10.1561 5.3543 43 1 4.7621 15.7849 7.0961 44 1 0.1019 6.4926 3.3999 45 1 1.2099 6.4084 4.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713154675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:38 Heat of formation + Delta-G solvation = 65.433295 kcal Electronic energy + Delta-G solvation = -25247.776379 eV Core-core repulsion = 21428.749616 eV Total energy + Delta-G solvation = -3819.026763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.49705 -41.21136 -39.46892 -36.57693 -35.30635 -34.57180 -33.95506 -33.13930 -31.25373 -30.39393 -27.68314 -27.24437 -26.59171 -25.01724 -24.10845 -22.78568 -22.17386 -21.75485 -20.40652 -19.80854 -18.31068 -17.97250 -17.46647 -17.07519 -16.86347 -16.74809 -16.46406 -16.22614 -15.92148 -15.72144 -15.12450 -15.00218 -14.76079 -14.48972 -14.45403 -13.89694 -13.87456 -13.54229 -13.30751 -13.25826 -13.15540 -13.05443 -12.85403 -12.78432 -12.55584 -12.31357 -12.12298 -11.76378 -11.73455 -11.69693 -11.35255 -11.19565 -11.11541 -10.93759 -10.26303 -10.18779 -10.02854 -9.27895 -8.65216 -8.33163 -6.11297 0.84069 1.28200 1.41361 1.45045 1.46509 1.48121 1.57827 1.62065 2.26741 2.30995 3.00983 3.13058 3.31477 3.33865 3.58878 3.70472 3.86912 3.94899 3.95282 3.99202 4.04729 4.14473 4.23393 4.29396 4.33302 4.52537 4.53059 4.63684 4.68825 4.74977 4.80298 4.84053 4.93287 4.98829 5.10296 5.11652 5.17300 5.19988 5.26317 5.42993 5.61161 5.80607 6.09564 6.20965 6.43663 6.54583 7.08090 7.28318 7.38633 8.75797 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.031187 B = 0.001489 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.597073 B =18795.154315 C =19108.308605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.125 3.875 3 N -0.159 5.159 4 N -0.312 5.312 5 C -0.027 4.027 6 C -0.005 4.005 7 C 0.151 3.849 8 N -0.676 5.676 9 C 0.083 3.917 10 H 0.109 0.891 11 C -0.172 4.172 12 C 0.109 3.891 13 H 0.078 0.922 14 N -0.694 5.694 15 C 0.536 3.464 16 O -0.566 6.566 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.120 4.120 28 N -0.293 5.293 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.219 0.781 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.349 0.651 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.101 0.899 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -33.080 -13.320 35.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.007 3.993 3 N -0.062 5.062 4 N -0.153 5.153 5 C -0.209 4.209 6 C -0.168 4.168 7 C 0.021 3.979 8 N -0.307 5.307 9 C -0.027 4.027 10 H 0.127 0.873 11 C -0.212 4.212 12 C 0.002 3.998 13 H 0.096 0.904 14 N -0.348 5.348 15 C 0.322 3.678 16 O -0.444 6.444 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.159 4.159 28 N -0.136 5.136 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.168 0.832 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.054 -33.412 -13.790 36.649 hybrid contribution 2.224 1.042 0.723 2.560 sum -3.830 -32.371 -13.067 35.118 Atomic orbital electron populations 1.22129 0.92575 1.05146 1.02248 1.22349 0.96516 0.73301 1.07157 1.48581 1.44588 1.14225 0.98797 1.74013 1.17975 1.06336 1.16964 1.25141 1.04616 0.96104 0.95049 1.23317 1.05002 0.94224 0.94227 1.20138 0.91722 0.89490 0.96574 1.60367 1.22918 1.25242 1.22211 1.23008 0.98620 0.86663 0.94440 0.87270 1.24133 1.02005 0.97775 0.97318 1.21792 0.91337 0.96390 0.90233 0.90407 1.45420 1.38547 1.05790 1.44995 1.20071 0.83261 0.82914 0.81525 1.90688 1.46154 1.56217 1.51333 1.23376 1.01601 1.01031 1.02082 1.85585 1.49611 0.99500 1.57803 1.23186 1.21675 0.96081 1.28624 0.89854 1.26116 0.99540 0.94637 0.98754 1.70179 1.41409 0.99732 1.43468 0.85013 0.77731 0.77360 0.77952 1.18641 1.20447 1.18670 1.23377 1.00186 0.91302 1.01035 1.73994 1.16950 1.06290 1.16410 0.92697 0.86942 0.92907 0.85865 0.86128 0.76412 0.90847 0.89470 0.83171 0.91703 0.88124 0.74648 0.87174 0.87091 0.92014 0.88029 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.24 71.98 0.74 -0.38 16 2 C 0.12 1.02 7.26 86.38 0.63 1.65 16 3 N -0.16 -2.64 3.95 -187.51 -0.74 -3.38 16 4 N -0.31 -5.60 12.05 -56.87 -0.69 -6.28 16 5 C -0.03 -0.40 12.16 85.11 1.03 0.64 16 6 C 0.00 -0.08 6.86 42.97 0.29 0.22 16 7 C 0.15 1.83 6.12 85.56 0.52 2.36 16 8 N -0.68 -8.64 6.61 -492.84 -3.26 -11.89 16 9 C 0.08 1.06 4.06 45.44 0.18 1.24 16 10 H 0.11 1.21 7.87 -2.39 -0.02 1.19 16 11 C -0.17 -2.79 7.49 31.12 0.23 -2.56 16 12 C 0.11 2.30 4.32 45.52 0.20 2.50 16 13 H 0.08 2.11 7.47 -2.39 -0.02 2.09 16 14 N -0.69 -16.62 5.26 -440.04 -2.32 -18.94 16 15 C 0.54 19.38 7.85 87.66 0.69 20.07 16 16 O -0.57 -26.08 15.46 -3.01 -0.05 -26.13 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 18 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 19 C -0.55 -31.16 9.50 67.95 0.65 -30.51 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 23 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 C -0.12 -1.79 7.63 31.12 0.24 -1.55 16 28 N -0.29 -5.62 12.05 -47.25 -0.57 -6.19 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 37 H 0.35 4.14 8.18 -89.69 -0.73 3.41 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.45 7.82 -2.39 -0.02 1.43 16 40 H 0.42 7.04 8.70 -92.71 -0.81 6.23 16 41 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 42 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -82.40 397.09 -0.68 -83.08 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.53 Total: 19.29 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 6.31 Total: -9.67 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -7.28 Total: -102.38 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -82.40 -0.68 -83.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713154675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.517 kcal (2) G-P(sol) polarization free energy of solvation -82.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds