Wall clock time and date at job start Tue Mar 31 2020 23:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47051 * 270.00068 * 3 2 1 5 5 H 1.48505 * 109.47188 * 29.99434 * 3 2 1 6 6 H 1.48503 * 109.47418 * 149.99681 * 3 2 1 7 7 C 1.38816 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00105 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47547 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.49504 * 55.06303 * 11 10 9 13 13 C 1.53034 * 109.52646 * 175.14640 * 11 10 9 14 14 C 1.53041 * 109.54149 * 181.33127 * 13 11 10 15 15 C 1.53628 * 109.24052 * 298.51621 * 14 13 11 16 16 N 1.46918 * 108.54691 * 54.85138 * 15 14 13 17 17 C 1.34775 * 120.63042 * 126.36868 * 16 15 14 18 18 O 1.21562 * 119.99853 * 182.62780 * 17 16 15 19 19 C 1.47842 * 120.00200 * 2.62531 * 17 16 15 20 20 C 1.40023 * 120.55650 * 304.45021 * 19 17 16 21 21 C 1.38353 * 118.28774 * 180.25143 * 20 19 17 22 22 C 1.38354 * 119.30399 * 0.06241 * 21 20 19 23 23 N 1.31926 * 121.07601 * 359.93813 * 22 21 20 24 24 C 1.31695 * 121.88480 * 0.02562 * 23 22 21 25 25 C 1.50691 * 119.71990 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.47209 * 20.23889 * 25 24 23 27 27 F 1.39900 * 109.47458 * 140.23566 * 25 24 23 28 28 C 1.46932 * 118.73880 * 306.09778 * 16 15 14 29 29 H 0.97000 * 119.99748 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00301 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47145 * 60.00018 * 10 9 7 32 32 H 1.09002 * 109.47070 * 300.00628 * 10 9 7 33 33 H 1.09000 * 109.46057 * 301.35509 * 13 11 10 34 34 H 1.09002 * 109.46169 * 61.32306 * 13 11 10 35 35 H 1.09002 * 109.49329 * 58.58808 * 14 13 11 36 36 H 1.08997 * 109.50358 * 178.68030 * 14 13 11 37 37 H 1.09004 * 109.73637 * 295.11316 * 15 14 13 38 38 H 1.09002 * 109.66312 * 174.54928 * 15 14 13 39 39 H 1.08003 * 120.85486 * 0.25148 * 20 19 17 40 40 H 1.08005 * 120.34736 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.46407 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47142 * 260.24115 * 25 24 23 43 43 H 1.09003 * 109.58663 * 173.64545 * 28 16 15 44 44 H 1.08999 * 109.58214 * 293.92746 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.3804 -4.7137 -0.8427 13 6 1.8237 -6.1424 -0.1221 14 6 0.8277 -7.3039 -0.1562 15 6 0.0292 -7.3247 1.1561 16 7 -0.5888 -6.0057 1.3480 17 6 -1.9147 -5.8932 1.5619 18 8 -2.4215 -4.7937 1.6717 19 6 -2.7528 -7.1069 1.6631 20 6 -2.7609 -8.0543 0.6321 21 6 -3.5667 -9.1701 0.7733 22 6 -4.3322 -9.3122 1.9170 23 7 -4.3043 -8.4029 2.8724 24 6 -3.5534 -7.3245 2.7847 25 6 -3.5587 -6.3173 3.9056 26 9 -4.0320 -6.9230 5.0746 27 9 -2.2578 -5.8483 4.1173 28 6 0.2670 -4.8120 1.3083 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6846 -3.7147 0.8906 32 1 2.6847 -3.7146 -0.8894 33 1 2.4108 -6.1405 -1.0405 34 1 2.4886 -6.2595 0.7336 35 1 0.1466 -7.1744 -0.9974 36 1 1.3684 -8.2438 -0.2667 37 1 0.6972 -7.5401 1.9901 38 1 -0.7474 -8.0876 1.1008 39 1 -2.1539 -7.9175 -0.2507 40 1 -3.5988 -9.9216 -0.0017 41 1 -4.9623 -10.1820 2.0298 42 1 -4.2075 -5.4824 3.6408 43 1 -0.3526 -3.9164 1.3536 44 1 0.9523 -4.8255 2.1559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713235527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:47 Heat of formation + Delta-G solvation = -79.971771 kcal Electronic energy + Delta-G solvation = -30255.405002 eV Core-core repulsion = 25843.939865 eV Total energy + Delta-G solvation = -4411.465137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.09469 -47.10012 -41.17723 -39.62070 -37.60369 -35.04153 -33.51443 -32.86426 -32.39437 -31.70542 -29.73728 -27.35865 -25.98409 -25.56624 -24.14027 -23.21093 -22.76671 -21.49738 -20.49228 -19.38744 -18.06460 -17.83176 -17.67200 -17.44460 -16.93997 -16.49716 -16.06133 -15.62875 -15.01840 -14.78482 -14.61139 -14.52518 -14.34024 -13.92468 -13.75975 -13.67059 -13.55841 -13.39065 -13.23458 -12.96081 -12.87216 -12.76774 -12.46366 -12.37407 -11.63771 -11.58050 -11.19183 -11.04360 -10.84654 -10.68452 -10.45318 -10.42057 -10.33477 -10.20700 -9.99481 -9.80021 -9.63208 -9.55345 -8.84645 -8.59022 -6.87938 -5.70304 -3.00195 0.23077 0.57736 2.52217 2.83777 3.05250 3.17969 3.47059 3.51761 3.54143 3.82437 4.02802 4.11753 4.28037 4.47793 4.57927 4.65714 4.67642 4.77350 4.84059 4.84748 4.89197 4.95732 5.16412 5.27566 5.33284 5.43210 5.47801 5.59795 5.62655 5.74969 5.77799 5.89026 5.95552 6.04678 6.08294 6.18117 6.36191 6.50840 6.56204 6.75100 6.86245 7.25051 7.35228 7.74185 8.06167 8.47322 9.58412 10.15895 10.50097 11.51936 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.003132 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.327816 B = 8939.081797 C =10108.840473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.132 4.132 15 C 0.097 3.903 16 N -0.597 5.597 17 C 0.559 3.441 18 O -0.514 6.514 19 C -0.139 4.139 20 C -0.047 4.047 21 C -0.159 4.159 22 C 0.116 3.884 23 N -0.455 5.455 24 C 0.095 3.905 25 C 0.325 3.675 26 F -0.187 7.187 27 F -0.183 7.183 28 C 0.121 3.879 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.169 0.831 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -25.180 1.833 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.026 4.026 16 N -0.329 5.329 17 C 0.344 3.656 18 O -0.390 6.390 19 C -0.144 4.144 20 C -0.073 4.073 21 C -0.178 4.178 22 C -0.042 4.042 23 N -0.163 5.163 24 C -0.045 4.045 25 C 0.270 3.730 26 F -0.168 7.168 27 F -0.164 7.164 28 C 0.000 4.000 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.154 0.846 43 H 0.125 0.875 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.527 -24.559 2.698 25.555 hybrid contribution 0.771 0.869 -0.795 1.408 sum -5.756 -23.690 1.903 24.454 Atomic orbital electron populations 1.69675 1.05051 1.25640 1.57360 1.24759 0.95501 0.97675 1.02959 0.86207 0.78646 0.83982 0.77431 1.21799 1.21769 1.20791 1.19194 0.90960 0.84163 1.43044 0.91237 1.42411 1.05942 0.99933 1.89501 1.20627 0.92923 0.85121 0.98056 1.21695 0.97993 0.95206 0.97747 0.90727 1.21528 0.97463 0.93613 1.02496 1.21993 0.98662 0.99421 0.96983 1.22055 0.97640 0.84541 0.98385 1.48021 1.06335 1.08408 1.70139 1.17943 0.82196 0.87965 0.77450 1.90893 1.72189 1.26463 1.49410 1.20790 0.99814 0.97253 0.96549 1.21800 0.96234 0.91665 0.97644 1.22262 0.97071 0.98762 0.99728 1.23000 0.95871 0.96766 0.88575 1.67382 1.18253 1.00967 1.29668 1.21744 0.93875 0.94388 0.94510 1.20136 0.81008 0.92033 0.79833 1.93021 1.88130 1.85249 1.50379 1.93069 1.39294 1.89140 1.94937 1.21811 0.93236 0.87543 0.97395 0.93484 0.78080 0.96194 0.96035 0.91345 0.91614 0.91503 0.90716 0.90995 0.90056 0.83237 0.83308 0.81407 0.84578 0.87539 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.79 5.38 -59.91 -0.32 -19.11 16 10 C 0.16 3.18 5.66 -4.04 -0.02 3.15 16 11 C -0.11 -1.68 2.37 -90.50 -0.21 -1.89 16 12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.29 5.17 -26.69 -0.14 -1.42 16 14 C -0.13 -1.16 6.10 -26.38 -0.16 -1.33 16 15 C 0.10 0.94 5.96 -3.49 -0.02 0.92 16 16 N -0.60 -8.27 2.97 -173.61 -0.51 -8.79 16 17 C 0.56 8.56 5.29 -12.33 -0.07 8.50 16 18 O -0.51 -10.00 15.34 5.31 0.08 -9.92 16 19 C -0.14 -1.67 4.90 -104.82 -0.51 -2.19 16 20 C -0.05 -0.40 7.56 -38.87 -0.29 -0.69 16 21 C -0.16 -0.97 10.10 -39.50 -0.40 -1.37 16 22 C 0.12 0.86 11.17 -17.47 -0.20 0.66 16 23 N -0.45 -5.07 9.84 -9.15 -0.09 -5.16 16 24 C 0.09 1.18 6.61 -82.18 -0.54 0.64 16 25 C 0.32 4.30 4.93 36.00 0.18 4.48 16 26 F -0.19 -2.53 16.96 2.25 0.04 -2.49 16 27 F -0.18 -2.84 14.84 2.25 0.03 -2.81 16 28 C 0.12 2.01 5.52 -3.71 -0.02 1.99 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.39 10.56 6.89 -40.82 -0.28 10.28 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.65 4.34 -51.93 -0.23 0.43 16 39 H 0.15 1.00 7.49 -52.48 -0.39 0.60 16 40 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 41 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.14 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.11 2.21 6.19 -51.93 -0.32 1.89 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -35.40 364.67 -8.07 -43.48 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.84 Total: 5.73 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.66 Total: 3.95 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.20 Total: -61.24 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.07 Total: -5.30 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.40 -8.07 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.495 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds