Wall clock time and date at job start Tue Mar 31 2020 23:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47051 * 270.00068 * 3 2 1 5 5 H 1.48505 * 109.47188 * 29.99434 * 3 2 1 6 6 H 1.48503 * 109.47418 * 149.99681 * 3 2 1 7 7 C 1.38816 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00105 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47547 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.49504 * 55.06303 * 11 10 9 13 13 C 1.53034 * 109.52646 * 175.14640 * 11 10 9 14 14 C 1.53041 * 109.54149 * 181.33127 * 13 11 10 15 15 C 1.53628 * 109.24052 * 298.51621 * 14 13 11 16 16 N 1.46918 * 108.54691 * 54.85138 * 15 14 13 17 17 C 1.34775 * 120.63042 * 126.36868 * 16 15 14 18 18 O 1.21562 * 119.99853 * 182.62780 * 17 16 15 19 19 C 1.47842 * 120.00200 * 2.62531 * 17 16 15 20 20 C 1.40023 * 120.55650 * 304.45021 * 19 17 16 21 21 C 1.38353 * 118.28774 * 180.25143 * 20 19 17 22 22 C 1.38354 * 119.30399 * 0.06241 * 21 20 19 23 23 N 1.31926 * 121.07601 * 359.93813 * 22 21 20 24 24 C 1.31695 * 121.88480 * 0.02562 * 23 22 21 25 25 C 1.50691 * 119.71990 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.47209 * 20.23889 * 25 24 23 27 27 F 1.39900 * 109.47458 * 140.23566 * 25 24 23 28 28 C 1.46932 * 118.73880 * 306.09778 * 16 15 14 29 29 H 0.97000 * 119.99748 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00301 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47145 * 60.00018 * 10 9 7 32 32 H 1.09002 * 109.47070 * 300.00628 * 10 9 7 33 33 H 1.09000 * 109.46057 * 301.35509 * 13 11 10 34 34 H 1.09002 * 109.46169 * 61.32306 * 13 11 10 35 35 H 1.09002 * 109.49329 * 58.58808 * 14 13 11 36 36 H 1.08997 * 109.50358 * 178.68030 * 14 13 11 37 37 H 1.09004 * 109.73637 * 295.11316 * 15 14 13 38 38 H 1.09002 * 109.66312 * 174.54928 * 15 14 13 39 39 H 1.08003 * 120.85486 * 0.25148 * 20 19 17 40 40 H 1.08005 * 120.34736 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.46407 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47142 * 260.24115 * 25 24 23 43 43 H 1.09003 * 109.58663 * 173.64545 * 28 16 15 44 44 H 1.08999 * 109.58214 * 293.92746 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.3804 -4.7137 -0.8427 13 6 1.8237 -6.1424 -0.1221 14 6 0.8277 -7.3039 -0.1562 15 6 0.0292 -7.3247 1.1561 16 7 -0.5888 -6.0057 1.3480 17 6 -1.9147 -5.8932 1.5619 18 8 -2.4215 -4.7937 1.6717 19 6 -2.7528 -7.1069 1.6631 20 6 -2.7609 -8.0543 0.6321 21 6 -3.5667 -9.1701 0.7733 22 6 -4.3322 -9.3122 1.9170 23 7 -4.3043 -8.4029 2.8724 24 6 -3.5534 -7.3245 2.7847 25 6 -3.5587 -6.3173 3.9056 26 9 -4.0320 -6.9230 5.0746 27 9 -2.2578 -5.8483 4.1173 28 6 0.2670 -4.8120 1.3083 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6846 -3.7147 0.8906 32 1 2.6847 -3.7146 -0.8894 33 1 2.4108 -6.1405 -1.0405 34 1 2.4886 -6.2595 0.7336 35 1 0.1466 -7.1744 -0.9974 36 1 1.3684 -8.2438 -0.2667 37 1 0.6972 -7.5401 1.9901 38 1 -0.7474 -8.0876 1.1008 39 1 -2.1539 -7.9175 -0.2507 40 1 -3.5988 -9.9216 -0.0017 41 1 -4.9623 -10.1820 2.0298 42 1 -4.2075 -5.4824 3.6408 43 1 -0.3526 -3.9164 1.3536 44 1 0.9523 -4.8255 2.1559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713235527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:46 Heat of formation + Delta-G solvation = -104.398226 kcal Electronic energy + Delta-G solvation = -30256.464213 eV Core-core repulsion = 25843.939865 eV Total energy + Delta-G solvation = -4412.524348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.19108 -48.20521 -42.06063 -40.58764 -38.82385 -36.67275 -34.77999 -33.79303 -33.31424 -33.09474 -31.39317 -28.33315 -27.23318 -26.90089 -24.98900 -24.90376 -23.61299 -22.71972 -21.72666 -20.44994 -19.21037 -18.91970 -18.78749 -18.64663 -18.35583 -17.51065 -17.08762 -16.70679 -16.40809 -16.07471 -15.71790 -15.50511 -15.44044 -15.24035 -15.04595 -15.02456 -14.55748 -14.48109 -14.30872 -14.13591 -14.01812 -13.91842 -13.74934 -13.51779 -13.03188 -12.91553 -12.70387 -12.56576 -12.20178 -12.11035 -11.94591 -11.85392 -11.60937 -11.35992 -11.33952 -10.96395 -10.92266 -10.66209 -10.37456 -9.73417 -9.01264 -7.94816 -5.25140 -0.50967 -0.07791 1.43398 1.44844 1.47772 1.56259 1.80558 2.19534 2.45197 2.55131 2.95171 3.07932 3.25121 3.38140 3.63212 3.68777 3.76656 3.84763 3.86371 3.90115 3.98037 4.04363 4.14504 4.23551 4.26945 4.35690 4.42361 4.56666 4.75417 4.77881 4.79812 4.86455 4.90273 4.92658 5.03885 5.10873 5.22016 5.32956 5.39306 5.43859 5.46758 5.51309 6.24540 6.25909 6.59027 6.93865 7.31429 8.08248 8.29913 9.28560 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014654 B = 0.003132 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.327816 B = 8939.081797 C =10108.840473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.157 3.843 11 C -0.092 4.092 12 H 0.057 0.943 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.090 3.910 16 N -0.594 5.594 17 C 0.553 3.447 18 O -0.574 6.574 19 C -0.156 4.156 20 C -0.047 4.047 21 C -0.130 4.130 22 C 0.117 3.883 23 N -0.479 5.479 24 C 0.077 3.923 25 C 0.317 3.683 26 F -0.191 7.191 27 F -0.202 7.202 28 C 0.129 3.871 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.171 0.829 40 H 0.199 0.801 41 H 0.208 0.792 42 H 0.137 0.863 43 H 0.053 0.947 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 -29.279 0.263 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.031 3.969 11 C -0.112 4.112 12 H 0.076 0.924 13 C -0.146 4.146 14 C -0.161 4.161 15 C -0.031 4.031 16 N -0.325 5.325 17 C 0.341 3.659 18 O -0.454 6.454 19 C -0.161 4.161 20 C -0.073 4.073 21 C -0.149 4.149 22 C -0.040 4.040 23 N -0.188 5.188 24 C -0.062 4.062 25 C 0.262 3.738 26 F -0.172 7.172 27 F -0.183 7.183 28 C 0.006 3.994 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.189 0.811 40 H 0.216 0.784 41 H 0.224 0.776 42 H 0.155 0.845 43 H 0.072 0.928 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.384 -28.733 1.123 29.254 hybrid contribution 0.420 1.991 -0.307 2.058 sum -4.964 -26.742 0.816 27.211 Atomic orbital electron populations 1.69869 1.06848 1.25994 1.59489 1.25657 0.96356 1.01421 1.03748 0.85098 0.77674 0.79223 0.77508 1.21160 1.22464 1.19131 1.19668 0.91572 0.85333 1.41165 0.90282 1.42680 1.05559 1.01485 1.89410 1.20852 0.93644 0.84263 0.98173 1.21541 0.97009 0.96392 0.96263 0.92442 1.21526 0.97843 0.91652 1.03544 1.21993 0.98090 0.99830 0.96183 1.22418 0.98533 0.82580 0.99522 1.48096 1.05899 1.09160 1.69350 1.18557 0.82700 0.88468 0.76185 1.90852 1.73398 1.29081 1.52040 1.20541 1.00322 0.97032 0.98238 1.22121 0.96896 0.91304 0.96936 1.22767 0.94160 0.98150 0.99802 1.23799 0.95683 0.96564 0.87959 1.67390 1.18499 1.01258 1.31631 1.21417 0.95393 0.95100 0.94284 1.20316 0.80108 0.93007 0.80356 1.92994 1.88081 1.85325 1.50814 1.93016 1.40636 1.89554 1.95118 1.21440 0.92713 0.87223 0.98020 0.94155 0.79755 0.95790 0.95218 0.90092 0.90707 0.91125 0.86679 0.90140 0.87655 0.81142 0.78366 0.77576 0.84549 0.92838 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.12 13.06 21.65 0.28 -62.84 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 3 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 9 N -0.75 -39.95 5.38 -343.45 -1.85 -41.80 16 10 C 0.16 6.29 5.66 86.38 0.49 6.78 16 11 C -0.09 -2.93 2.37 -10.72 -0.03 -2.95 16 12 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 13 C -0.11 -2.17 5.17 30.62 0.16 -2.01 16 14 C -0.12 -1.67 6.10 30.82 0.19 -1.48 16 15 C 0.09 1.53 5.96 86.51 0.52 2.04 16 16 N -0.59 -16.75 2.97 -821.45 -2.44 -19.18 16 17 C 0.55 17.80 5.29 86.79 0.46 18.26 16 18 O -0.57 -24.59 15.34 -3.91 -0.06 -24.65 16 19 C -0.16 -3.68 4.90 -19.99 -0.10 -3.78 16 20 C -0.05 -0.63 7.56 22.73 0.17 -0.45 16 21 C -0.13 -0.89 10.10 22.32 0.23 -0.67 16 22 C 0.12 1.26 11.17 84.71 0.95 2.21 16 23 N -0.48 -9.95 9.84 -182.86 -1.80 -11.75 16 24 C 0.08 1.93 6.61 42.88 0.28 2.21 16 25 C 0.32 9.08 4.93 71.23 0.35 9.43 16 26 F -0.19 -5.47 16.96 44.97 0.76 -4.71 16 27 F -0.20 -6.85 14.84 44.97 0.67 -6.18 16 28 C 0.13 4.52 5.52 86.36 0.48 5.00 16 29 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.37 21.71 6.89 -92.71 -0.64 21.07 16 31 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.11 1.30 4.34 -2.39 -0.01 1.29 16 39 H 0.17 1.52 7.49 -2.91 -0.02 1.50 16 40 H 0.20 -0.51 8.06 -2.91 -0.02 -0.53 16 41 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.05 2.46 6.19 -2.39 -0.01 2.45 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -84.84 364.67 3.45 -81.40 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.40 Total: 22.90 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 5.45 Total: 16.85 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -5.80 Total: -135.57 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 1.43 Total: -10.89 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -84.84 3.45 -81.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.003 kcal (2) G-P(sol) polarization free energy of solvation -84.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds