Wall clock time and date at job start Tue Mar 31 2020 23:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48502 * 109.47271 * 90.00194 * 3 2 1 5 5 H 1.48503 * 109.46786 * 209.99736 * 3 2 1 6 6 H 1.48496 * 109.47062 * 329.99780 * 3 2 1 7 7 C 1.38815 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00139 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46972 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49798 * 304.93729 * 11 10 9 13 13 C 1.53042 * 109.49724 * 184.83974 * 11 10 9 14 14 C 1.53033 * 109.54136 * 178.68779 * 13 11 10 15 15 C 1.53191 * 109.31471 * 61.36335 * 14 13 11 16 16 N 1.46928 * 108.77654 * 305.36992 * 15 14 13 17 17 C 1.34778 * 120.63163 * 233.58565 * 16 15 14 18 18 O 1.21552 * 119.99919 * 174.57321 * 17 16 15 19 19 C 1.47837 * 119.99874 * 354.57887 * 17 16 15 20 20 C 1.40026 * 120.55571 * 305.27368 * 19 17 16 21 21 C 1.38360 * 118.28765 * 179.73803 * 20 19 17 22 22 C 1.38354 * 119.30117 * 0.51523 * 21 20 19 23 23 N 1.31926 * 121.07930 * 359.74291 * 22 21 20 24 24 C 1.31692 * 121.88115 * 0.02562 * 23 22 21 25 25 C 1.50700 * 119.71734 * 180.02562 * 24 23 22 26 26 F 1.39894 * 109.47594 * 119.97114 * 25 24 23 27 27 F 1.39902 * 109.46725 * 239.97047 * 25 24 23 28 28 C 1.46924 * 118.73994 * 53.60246 * 16 15 14 29 29 H 0.96998 * 119.99907 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00031 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46993 * 300.00472 * 10 9 7 32 32 H 1.08999 * 109.46918 * 60.00512 * 10 9 7 33 33 H 1.09001 * 109.45715 * 298.70836 * 13 11 10 34 34 H 1.09001 * 109.46020 * 58.66321 * 13 11 10 35 35 H 1.09008 * 109.49226 * 301.41525 * 14 13 11 36 36 H 1.08998 * 109.52603 * 181.33421 * 14 13 11 37 37 H 1.09001 * 109.58857 * 185.58124 * 15 14 13 38 38 H 1.09000 * 109.70139 * 65.22275 * 15 14 13 39 39 H 1.07997 * 120.85975 * 0.02562 * 20 19 17 40 40 H 1.07998 * 120.34892 * 180.26156 * 21 20 19 41 41 H 1.08007 * 119.46000 * 179.72488 * 22 21 20 42 42 H 1.09002 * 109.47379 * 359.96370 * 25 24 23 43 43 H 1.09002 * 109.59060 * 186.60223 * 28 16 15 44 44 H 1.09007 * 109.58311 * 66.18042 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3799 -4.7140 0.8419 13 6 1.8245 -6.1422 0.1216 14 6 0.8291 -7.3041 0.1540 15 6 0.0309 -7.3240 -1.1534 16 7 -0.5868 -6.0055 -1.3505 17 6 -1.9126 -5.8935 -1.5655 18 8 -2.4273 -4.7941 -1.6288 19 6 -2.7409 -7.1077 -1.7242 20 6 -2.4150 -8.0710 -2.6868 21 6 -3.2193 -9.1919 -2.7913 22 6 -4.3154 -9.3189 -1.9567 23 7 -4.6013 -8.3923 -1.0622 24 6 -3.8640 -7.3103 -0.9215 25 6 -4.2352 -6.2831 0.1167 26 9 -3.1837 -6.1403 1.0284 27 9 -4.4802 -5.0557 -0.5084 28 6 0.2683 -4.8115 -1.3093 29 1 -0.4850 -0.8400 0.0004 30 1 0.3557 -2.3881 -0.0002 31 1 2.6849 -3.7145 -0.8894 32 1 2.6847 -3.7145 0.8906 33 1 2.4903 -6.2581 -0.7336 34 1 2.4109 -6.1406 1.0405 35 1 0.1472 -7.1755 0.9947 36 1 1.3698 -8.2440 0.2645 37 1 -0.7459 -8.0865 -1.0957 38 1 0.6973 -7.5437 -1.9875 39 1 -1.5552 -7.9445 -3.3281 40 1 -2.9961 -9.9577 -3.5193 41 1 -4.9476 -10.1908 -2.0391 42 1 -5.1321 -6.6074 0.6444 43 1 -0.3517 -3.9162 -1.3545 44 1 0.9561 -4.8252 -2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713235528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:50 Heat of formation + Delta-G solvation = -80.566708 kcal Electronic energy + Delta-G solvation = -30664.351056 eV Core-core repulsion = 26252.860120 eV Total energy + Delta-G solvation = -4411.490936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.98332 -46.94589 -41.15979 -39.67994 -37.61828 -35.16532 -33.64571 -32.93982 -32.35694 -31.76600 -29.54262 -27.36047 -25.94184 -25.32107 -24.26921 -23.13432 -22.75042 -21.59146 -20.51765 -19.44036 -18.12565 -17.86691 -17.52991 -17.22559 -17.10232 -16.44399 -16.06579 -15.63200 -15.18957 -14.83594 -14.54527 -14.34827 -14.21813 -14.10494 -13.80632 -13.68229 -13.53196 -13.36476 -13.29411 -13.13751 -12.92619 -12.60877 -12.49773 -12.41677 -11.72629 -11.53017 -11.17711 -10.84393 -10.66849 -10.62213 -10.49325 -10.41480 -10.30291 -10.21789 -9.93037 -9.88606 -9.61769 -9.07749 -8.81180 -8.61095 -6.91205 -5.99806 -3.00275 0.19455 0.53687 2.49691 2.80634 3.03280 3.12854 3.56875 3.62707 3.76856 3.90948 4.03424 4.11287 4.24894 4.44940 4.59553 4.66950 4.74295 4.80359 4.81460 4.85891 4.92522 4.94924 5.12169 5.22376 5.33239 5.39249 5.44059 5.55094 5.69148 5.73566 5.76498 5.85630 5.91417 6.00671 6.04426 6.09809 6.32759 6.42300 6.52081 6.71627 6.82606 7.18461 7.31661 7.89079 8.06209 8.86033 9.33101 10.19344 10.34161 11.48526 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.003322 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.980606 B = 8427.431559 C = 9404.936432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.083 2.917 4 H -0.296 1.296 5 H -0.296 1.296 6 H -0.288 1.288 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.167 3.833 11 C -0.109 4.109 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.105 3.895 16 N -0.601 5.601 17 C 0.548 3.452 18 O -0.495 6.495 19 C -0.130 4.130 20 C -0.048 4.048 21 C -0.155 4.155 22 C 0.113 3.887 23 N -0.458 5.458 24 C 0.092 3.908 25 C 0.319 3.681 26 F -0.190 7.190 27 F -0.169 7.169 28 C 0.123 3.877 29 H 0.258 0.742 30 H 0.368 0.632 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 -26.820 -4.574 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.243 4.243 3 Si 0.914 3.086 4 H -0.224 1.224 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.466 4.466 8 H 0.082 0.918 9 N -0.391 5.391 10 C 0.039 3.961 11 C -0.129 4.129 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.171 4.171 15 C -0.018 4.018 16 N -0.334 5.334 17 C 0.333 3.667 18 O -0.369 6.369 19 C -0.136 4.136 20 C -0.075 4.075 21 C -0.175 4.175 22 C -0.044 4.044 23 N -0.167 5.167 24 C -0.048 4.048 25 C 0.264 3.736 26 F -0.171 7.171 27 F -0.150 7.150 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.202 0.798 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.147 0.853 43 H 0.120 0.880 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.281 -24.599 -4.074 25.713 hybrid contribution 0.805 -1.717 -0.575 1.981 sum -5.476 -26.315 -4.649 27.278 Atomic orbital electron populations 1.70816 1.05997 1.28741 1.53093 1.25779 0.97092 1.00973 1.00483 0.83196 0.73795 0.75404 0.76157 1.22386 1.22238 1.21396 1.20020 0.91922 0.85836 1.48846 0.91838 1.42430 1.04984 1.00913 1.90730 1.20554 0.92789 0.84657 0.98079 1.21716 0.98014 0.95325 0.97800 0.90692 1.21507 0.97392 0.93565 1.02441 1.21903 0.98616 0.99232 0.97388 1.21824 0.97292 0.84344 0.98318 1.48048 1.06428 1.08367 1.70565 1.18072 0.82098 0.88276 0.78267 1.90967 1.71271 1.26342 1.48317 1.20891 0.97299 0.96737 0.98642 1.21814 0.98889 0.91477 0.95285 1.22257 0.95892 0.98644 1.00674 1.22964 0.94902 0.96670 0.89891 1.67298 1.28722 1.00923 1.19720 1.21733 0.91755 0.94524 0.96794 1.20090 0.89484 0.80307 0.83740 1.93056 1.60747 1.96047 1.67273 1.93178 1.94323 1.44309 1.83164 1.21764 0.93068 0.87559 0.97467 0.93104 0.79787 0.96219 0.95980 0.91684 0.91349 0.91317 0.90756 0.90536 0.91097 0.83437 0.83293 0.81334 0.85329 0.88023 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.74 13.70 55.49 0.76 -29.98 16 2 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 3 Si 1.08 27.04 29.92 -169.99 -5.09 21.95 16 4 H -0.30 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.34 -9.87 9.99 -15.06 -0.15 -10.02 16 8 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.74 -19.70 5.37 -59.91 -0.32 -20.03 16 10 C 0.17 3.46 5.65 -4.04 -0.02 3.44 16 11 C -0.11 -1.82 2.38 -90.50 -0.22 -2.04 16 12 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.11 -1.37 5.17 -26.69 -0.14 -1.50 16 14 C -0.13 -1.36 6.08 -26.62 -0.16 -1.52 16 15 C 0.11 1.06 5.66 -3.71 -0.02 1.03 16 16 N -0.60 -8.57 2.97 -173.88 -0.52 -9.09 16 17 C 0.55 8.81 6.00 -12.33 -0.07 8.73 16 18 O -0.50 -10.29 13.74 5.32 0.07 -10.22 16 19 C -0.13 -1.63 4.56 -104.82 -0.48 -2.11 16 20 C -0.05 -0.41 7.96 -38.87 -0.31 -0.72 16 21 C -0.16 -0.91 10.10 -39.49 -0.40 -1.31 16 22 C 0.11 0.78 11.17 -17.47 -0.20 0.59 16 23 N -0.46 -4.75 10.24 -9.14 -0.09 -4.85 16 24 C 0.09 1.15 6.31 -82.17 -0.52 0.63 16 25 C 0.32 4.36 5.10 36.01 0.18 4.54 16 26 F -0.19 -2.96 16.54 2.25 0.04 -2.92 16 27 F -0.17 -2.93 14.63 2.25 0.03 -2.90 16 28 C 0.12 2.08 5.53 -3.71 -0.02 2.06 16 29 H 0.26 8.44 6.77 -40.82 -0.28 8.16 16 30 H 0.37 10.23 5.72 -40.82 -0.23 10.00 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.67 5.40 -51.93 -0.28 0.39 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.15 0.96 7.85 -52.49 -0.41 0.55 16 40 H 0.15 0.35 8.06 -52.49 -0.42 -0.08 16 41 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.13 1.29 8.11 -51.93 -0.42 0.87 16 43 H 0.10 2.16 6.20 -51.93 -0.32 1.83 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -37.91 362.86 -8.06 -45.98 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.80 Total: 6.24 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.62 Total: 0.34 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.17 Total: -63.93 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.07 Total: -5.83 kcal Atomic # 14 Polarization: 27.04 SS G_CDS: -5.09 Total: 21.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.91 -8.06 -45.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.590 kcal (2) G-P(sol) polarization free energy of solvation -37.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds