Wall clock time and date at job start Tue Mar 31 2020 23:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48502 * 109.47271 * 90.00194 * 3 2 1 5 5 H 1.48503 * 109.46786 * 209.99736 * 3 2 1 6 6 H 1.48496 * 109.47062 * 329.99780 * 3 2 1 7 7 C 1.38815 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00139 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46972 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49798 * 304.93729 * 11 10 9 13 13 C 1.53042 * 109.49724 * 184.83974 * 11 10 9 14 14 C 1.53033 * 109.54136 * 178.68779 * 13 11 10 15 15 C 1.53191 * 109.31471 * 61.36335 * 14 13 11 16 16 N 1.46928 * 108.77654 * 305.36992 * 15 14 13 17 17 C 1.34778 * 120.63163 * 233.58565 * 16 15 14 18 18 O 1.21552 * 119.99919 * 174.57321 * 17 16 15 19 19 C 1.47837 * 119.99874 * 354.57887 * 17 16 15 20 20 C 1.40026 * 120.55571 * 305.27368 * 19 17 16 21 21 C 1.38360 * 118.28765 * 179.73803 * 20 19 17 22 22 C 1.38354 * 119.30117 * 0.51523 * 21 20 19 23 23 N 1.31926 * 121.07930 * 359.74291 * 22 21 20 24 24 C 1.31692 * 121.88115 * 0.02562 * 23 22 21 25 25 C 1.50700 * 119.71734 * 180.02562 * 24 23 22 26 26 F 1.39894 * 109.47594 * 119.97114 * 25 24 23 27 27 F 1.39902 * 109.46725 * 239.97047 * 25 24 23 28 28 C 1.46924 * 118.73994 * 53.60246 * 16 15 14 29 29 H 0.96998 * 119.99907 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00031 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46993 * 300.00472 * 10 9 7 32 32 H 1.08999 * 109.46918 * 60.00512 * 10 9 7 33 33 H 1.09001 * 109.45715 * 298.70836 * 13 11 10 34 34 H 1.09001 * 109.46020 * 58.66321 * 13 11 10 35 35 H 1.09008 * 109.49226 * 301.41525 * 14 13 11 36 36 H 1.08998 * 109.52603 * 181.33421 * 14 13 11 37 37 H 1.09001 * 109.58857 * 185.58124 * 15 14 13 38 38 H 1.09000 * 109.70139 * 65.22275 * 15 14 13 39 39 H 1.07997 * 120.85975 * 0.02562 * 20 19 17 40 40 H 1.07998 * 120.34892 * 180.26156 * 21 20 19 41 41 H 1.08007 * 119.46000 * 179.72488 * 22 21 20 42 42 H 1.09002 * 109.47379 * 359.96370 * 25 24 23 43 43 H 1.09002 * 109.59060 * 186.60223 * 28 16 15 44 44 H 1.09007 * 109.58311 * 66.18042 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3799 -4.7140 0.8419 13 6 1.8245 -6.1422 0.1216 14 6 0.8291 -7.3041 0.1540 15 6 0.0309 -7.3240 -1.1534 16 7 -0.5868 -6.0055 -1.3505 17 6 -1.9126 -5.8935 -1.5655 18 8 -2.4273 -4.7941 -1.6288 19 6 -2.7409 -7.1077 -1.7242 20 6 -2.4150 -8.0710 -2.6868 21 6 -3.2193 -9.1919 -2.7913 22 6 -4.3154 -9.3189 -1.9567 23 7 -4.6013 -8.3923 -1.0622 24 6 -3.8640 -7.3103 -0.9215 25 6 -4.2352 -6.2831 0.1167 26 9 -3.1837 -6.1403 1.0284 27 9 -4.4802 -5.0557 -0.5084 28 6 0.2683 -4.8115 -1.3093 29 1 -0.4850 -0.8400 0.0004 30 1 0.3557 -2.3881 -0.0002 31 1 2.6849 -3.7145 -0.8894 32 1 2.6847 -3.7145 0.8906 33 1 2.4903 -6.2581 -0.7336 34 1 2.4109 -6.1406 1.0405 35 1 0.1472 -7.1755 0.9947 36 1 1.3698 -8.2440 0.2645 37 1 -0.7459 -8.0865 -1.0957 38 1 0.6973 -7.5437 -1.9875 39 1 -1.5552 -7.9445 -3.3281 40 1 -2.9961 -9.9577 -3.5193 41 1 -4.9476 -10.1908 -2.0391 42 1 -5.1321 -6.6074 0.6444 43 1 -0.3517 -3.9162 -1.3545 44 1 0.9561 -4.8252 -2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713235528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:49 Heat of formation + Delta-G solvation = -107.822216 kcal Electronic energy + Delta-G solvation = -30665.532944 eV Core-core repulsion = 26252.860120 eV Total energy + Delta-G solvation = -4412.672823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.14303 -48.14832 -42.05055 -40.66880 -38.91681 -36.93934 -34.93659 -33.88148 -33.27281 -33.13180 -31.29734 -28.33547 -27.08104 -26.84363 -25.12510 -25.02653 -23.60366 -22.89199 -21.78645 -20.53741 -19.37223 -19.02993 -18.77815 -18.52889 -18.35609 -17.52153 -17.06336 -16.76723 -16.39299 -16.21482 -15.89873 -15.69520 -15.42576 -15.28662 -15.19826 -14.83298 -14.63374 -14.52195 -14.27968 -14.24810 -14.14846 -14.07447 -13.87762 -13.39378 -13.12638 -12.69920 -12.59927 -12.52844 -12.19698 -11.97156 -11.92602 -11.81075 -11.61744 -11.35262 -11.21317 -11.01362 -10.97862 -10.74345 -10.43238 -9.79328 -9.15888 -8.43799 -5.38041 -0.54009 -0.09767 1.37542 1.54385 1.67173 1.75863 1.81106 2.18948 2.41311 2.69790 3.05717 3.08840 3.26999 3.37278 3.55972 3.69255 3.74296 3.76736 3.80948 3.84386 3.93414 3.97076 3.99395 4.15997 4.19204 4.29159 4.34272 4.47072 4.62580 4.67331 4.74961 4.78312 4.79978 4.89412 4.91367 5.00248 5.10743 5.22588 5.34717 5.38613 5.40599 5.54408 6.18317 6.41496 6.54032 6.90737 7.03899 7.93712 8.07827 9.07033 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.003322 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.980606 B = 8427.431559 C = 9404.936432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.111 4.111 3 Si 1.136 2.864 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.294 1.294 7 C -0.335 4.335 8 H 0.072 0.928 9 N -0.761 5.761 10 C 0.165 3.835 11 C -0.096 4.096 12 H 0.042 0.958 13 C -0.104 4.104 14 C -0.128 4.128 15 C 0.100 3.900 16 N -0.597 5.597 17 C 0.541 3.459 18 O -0.563 6.563 19 C -0.154 4.154 20 C -0.047 4.047 21 C -0.127 4.127 22 C 0.117 3.883 23 N -0.473 5.473 24 C 0.072 3.928 25 C 0.303 3.697 26 F -0.209 7.209 27 F -0.198 7.198 28 C 0.130 3.870 29 H 0.238 0.762 30 H 0.355 0.645 31 H 0.031 0.969 32 H 0.025 0.975 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.170 0.830 40 H 0.200 0.800 41 H 0.212 0.788 42 H 0.160 0.840 43 H 0.046 0.954 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -31.287 -6.102 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.301 4.301 3 Si 0.959 3.041 4 H -0.210 1.210 5 H -0.192 1.192 6 H -0.221 1.221 7 C -0.466 4.466 8 H 0.090 0.910 9 N -0.406 5.406 10 C 0.038 3.962 11 C -0.116 4.116 12 H 0.060 0.940 13 C -0.141 4.141 14 C -0.166 4.166 15 C -0.021 4.021 16 N -0.329 5.329 17 C 0.328 3.672 18 O -0.441 6.441 19 C -0.160 4.160 20 C -0.073 4.073 21 C -0.146 4.146 22 C -0.041 4.041 23 N -0.182 5.182 24 C -0.066 4.066 25 C 0.248 3.752 26 F -0.190 7.190 27 F -0.180 7.180 28 C 0.007 3.993 29 H 0.049 0.951 30 H 0.187 0.813 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.187 0.813 40 H 0.217 0.783 41 H 0.228 0.772 42 H 0.177 0.823 43 H 0.064 0.936 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.463 -29.163 -5.588 30.027 hybrid contribution 0.251 -0.518 -0.128 0.590 sum -4.213 -29.681 -5.716 30.519 Atomic orbital electron populations 1.70961 1.07448 1.27616 1.56312 1.27437 0.97017 1.05211 1.00483 0.82555 0.73570 0.71015 0.76946 1.20975 1.19181 1.22083 1.20459 0.92490 0.87004 1.46697 0.90961 1.42734 1.04676 1.02440 1.90728 1.20773 0.93427 0.83747 0.98223 1.21563 0.96942 0.96702 0.96374 0.93980 1.21497 0.97651 0.91223 1.03773 1.21909 0.97945 1.00013 0.96697 1.22224 0.98252 0.82186 0.99467 1.48132 1.05963 1.09168 1.69611 1.18779 0.82632 0.88838 0.76920 1.90926 1.72572 1.29240 1.51361 1.20671 0.97496 0.96552 1.01276 1.22142 1.00057 0.91060 0.94016 1.22787 0.93789 0.98050 0.99996 1.23831 0.95443 0.96518 0.88264 1.67319 1.28616 1.00892 1.21347 1.21397 0.92687 0.95267 0.97275 1.20673 0.90184 0.79752 0.84559 1.93000 1.61794 1.96152 1.68049 1.93106 1.94494 1.46562 1.83808 1.21420 0.92643 0.87181 0.98028 0.95139 0.81296 0.95129 0.95721 0.89444 0.90693 0.93451 0.86518 0.88608 0.87676 0.81280 0.78296 0.77153 0.82257 0.93581 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.99 13.70 21.65 0.30 -66.70 16 2 C -0.11 -6.94 5.50 84.86 0.47 -6.48 16 3 Si 1.14 55.19 29.92 68.60 2.05 57.24 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 7 C -0.34 -20.25 9.99 84.04 0.84 -19.41 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.76 -42.41 5.37 -343.44 -1.85 -44.25 16 10 C 0.16 6.98 5.65 86.38 0.49 7.47 16 11 C -0.10 -3.33 2.38 -10.71 -0.03 -3.36 16 12 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 13 C -0.10 -2.34 5.17 30.62 0.16 -2.18 16 14 C -0.13 -2.25 6.08 30.67 0.19 -2.07 16 15 C 0.10 1.72 5.66 86.36 0.49 2.21 16 16 N -0.60 -17.37 2.97 -822.31 -2.44 -19.81 16 17 C 0.54 18.46 6.00 86.78 0.52 18.98 16 18 O -0.56 -26.02 13.74 -3.88 -0.05 -26.07 16 19 C -0.15 -3.81 4.56 -19.99 -0.09 -3.90 16 20 C -0.05 -0.63 7.96 22.73 0.18 -0.45 16 21 C -0.13 -0.79 10.10 22.33 0.23 -0.57 16 22 C 0.12 1.09 11.17 84.71 0.95 2.04 16 23 N -0.47 -8.91 10.24 -182.84 -1.87 -10.78 16 24 C 0.07 1.82 6.31 42.89 0.27 2.09 16 25 C 0.30 8.98 5.10 71.24 0.36 9.34 16 26 F -0.21 -7.16 16.54 44.97 0.74 -6.42 16 27 F -0.20 -7.72 14.63 44.97 0.66 -7.06 16 28 C 0.13 4.67 5.53 86.36 0.48 5.14 16 29 H 0.24 16.84 6.77 -92.71 -0.63 16.21 16 30 H 0.36 21.49 5.72 -92.71 -0.53 20.96 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.02 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.34 5.40 -2.39 -0.01 1.33 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.17 1.47 7.85 -2.91 -0.02 1.45 16 40 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 41 H 0.21 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.16 3.45 8.11 -2.39 -0.02 3.43 16 43 H 0.05 2.18 6.20 -2.39 -0.01 2.16 16 44 H 0.08 2.68 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -93.42 362.86 3.68 -89.74 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.65 Total: 25.23 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.50 Total: 8.87 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -5.87 Total: -141.54 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 1.40 Total: -13.48 kcal Atomic # 14 Polarization: 55.19 SS G_CDS: 2.05 Total: 57.24 kcal Total: -93.42 3.68 -89.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713235528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.079 kcal (2) G-P(sol) polarization free energy of solvation -93.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds