Wall clock time and date at job start Tue Mar 31 2020 22:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28598 * 124.62335 * 2 1 4 4 C 1.31380 * 108.72332 * 179.72006 * 3 2 1 5 5 C 1.39680 * 105.89595 * 0.42729 * 4 3 2 6 6 C 1.50697 * 127.04806 * 179.83564 * 5 4 3 7 7 N 1.46901 * 109.47110 * 94.71503 * 6 5 4 8 8 C 1.48554 * 110.99852 * 69.87140 * 7 6 5 9 9 C 1.54383 * 104.59576 * 200.96010 * 8 7 6 10 10 C 1.54259 * 105.05950 * 23.85952 * 9 8 7 11 11 H 1.09009 * 110.32168 * 241.00197 * 10 9 8 12 12 C 1.52997 * 110.32700 * 118.89546 * 10 9 8 13 13 N 1.46497 * 109.46983 * 66.45289 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.48564 * 110.99610 * 314.45688 * 7 6 5 27 27 N 1.28605 * 124.61870 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46765 * 270.00019 * 1 2 3 29 29 H 1.09005 * 109.47014 * 29.99255 * 1 2 3 30 30 H 1.08997 * 109.47228 * 149.99963 * 1 2 3 31 31 H 1.07995 * 127.05258 * 180.27131 * 4 3 2 32 32 H 1.09005 * 109.47239 * 334.71679 * 6 5 4 33 33 H 1.08996 * 109.47195 * 214.71554 * 6 5 4 34 34 H 1.09003 * 110.41081 * 82.18228 * 8 7 6 35 35 H 1.09001 * 110.51574 * 319.79365 * 8 7 6 36 36 H 1.09002 * 110.32453 * 264.95749 * 9 8 7 37 37 H 1.09008 * 110.40963 * 142.79307 * 9 8 7 38 38 H 1.09001 * 109.46832 * 306.45106 * 12 10 9 39 39 H 1.09002 * 109.47153 * 186.45297 * 12 10 9 40 40 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 41 41 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 42 42 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 43 43 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 44 44 H 1.08991 * 110.41459 * 40.26239 * 26 7 6 45 45 H 1.09007 * 110.41091 * 277.81211 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1957 1.0582 0.0000 4 6 3.4592 0.6983 0.0061 5 6 3.4591 -0.6985 -0.0001 6 6 4.6618 -1.6065 -0.0002 7 7 4.9796 -1.9984 1.3794 8 6 3.9457 -2.9157 1.9238 9 6 4.0949 -2.8045 3.4564 10 6 4.7496 -1.4285 3.6965 11 1 5.7128 -1.5489 4.1926 12 6 3.8282 -0.5406 4.5352 13 7 3.6996 -1.1042 5.8813 14 6 2.9307 -0.4865 6.7998 15 8 2.3456 0.5362 6.5121 16 6 2.7988 -1.0659 8.1847 17 16 1.7086 -0.0156 9.1769 18 6 1.7334 -0.9012 10.6998 19 1 2.3150 -1.8070 10.7884 20 6 1.0045 -0.4355 11.7855 21 7 0.2953 0.6680 11.6773 22 14 1.0302 -1.3749 13.3999 23 1 1.8966 -2.5731 13.2617 24 1 1.5637 -0.4990 14.4738 25 1 -0.3496 -1.7998 13.7474 26 6 4.9410 -0.8242 2.2887 27 7 2.1956 -1.0584 -0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 4.3211 1.3490 0.0118 32 1 5.5131 -1.0818 -0.4341 33 1 4.4447 -2.4969 -0.5901 34 1 4.1345 -3.9383 1.5967 35 1 2.9505 -2.5962 1.6145 36 1 4.7374 -3.6004 3.8330 37 1 3.1178 -2.8479 3.9376 38 1 2.8454 -0.4916 4.0663 39 1 4.2503 0.4623 4.6000 40 1 4.1672 -1.9223 6.1113 41 1 2.3774 -2.0691 8.1202 42 1 3.7816 -1.1141 8.6535 43 1 -0.2138 0.9937 12.4361 44 1 4.1024 -0.1754 2.0364 45 1 5.8793 -0.2719 2.2365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713522978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:25 Heat of formation + Delta-G solvation = 82.032230 kcal Electronic energy + Delta-G solvation = -26623.599235 eV Core-core repulsion = 22805.292256 eV Total energy + Delta-G solvation = -3818.306979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.93549 -39.84403 -38.79341 -35.46008 -34.05425 -32.99172 -32.43162 -31.95803 -30.13925 -28.96723 -28.23324 -26.29804 -25.48998 -24.42954 -22.86493 -22.08745 -20.78371 -20.33445 -20.06276 -17.87557 -17.61395 -17.29968 -16.55223 -16.36109 -16.00141 -15.33392 -15.27754 -15.02277 -14.80846 -14.69896 -14.44290 -13.90293 -13.52451 -13.44297 -13.25357 -13.18098 -12.96016 -12.60613 -12.56186 -12.14334 -12.10086 -11.89062 -11.54434 -11.30676 -11.11122 -11.08260 -11.04830 -11.02023 -10.80170 -10.74334 -10.54093 -9.80700 -9.49346 -9.40059 -9.08067 -8.97296 -8.87069 -8.23103 -6.50187 -6.22026 -3.92395 1.48309 2.00430 2.04466 3.03295 3.10927 3.21356 3.27991 3.32706 3.61620 3.71746 3.81770 4.20194 4.31414 4.37060 4.43933 4.61033 4.64659 4.66339 4.84684 4.93512 5.02925 5.06569 5.13238 5.14196 5.19377 5.28133 5.29931 5.42785 5.47683 5.57048 5.62451 5.67900 5.71920 5.80908 5.83355 5.88276 5.92670 6.02727 6.14283 6.35347 6.45771 6.56078 6.63849 7.59722 7.72395 7.99787 8.35298 8.62461 9.23434 10.85486 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.002124 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.815303 B =13176.625777 C =14035.549689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.156 5.156 3 N -0.285 5.285 4 C -0.018 4.018 5 C -0.035 4.035 6 C 0.131 3.869 7 N -0.495 5.495 8 C 0.026 3.974 9 C -0.123 4.123 10 C -0.103 4.103 11 H 0.088 0.912 12 C 0.132 3.868 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.034 3.966 27 N -0.279 5.279 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.196 0.804 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.057 0.943 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 -6.460 -26.926 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.057 5.057 3 N -0.126 5.126 4 C -0.201 4.201 5 C -0.199 4.199 6 C 0.000 4.000 7 N -0.217 5.217 8 C -0.102 4.102 9 C -0.162 4.162 10 C -0.122 4.122 11 H 0.107 0.893 12 C 0.007 3.993 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.095 4.095 27 N -0.122 5.122 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.213 0.787 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.589 -4.858 -27.364 28.562 hybrid contribution 0.886 -1.647 1.478 2.384 sum 7.475 -6.506 -25.886 27.718 Atomic orbital electron populations 1.22178 0.70094 1.05771 1.05384 1.47995 1.08991 0.99310 1.49437 1.74100 1.03947 1.16003 1.18552 1.24689 0.94569 0.94653 1.06201 1.24056 0.93546 0.95090 1.07220 1.20804 0.90454 0.96724 0.92006 1.65764 1.43227 1.11790 1.00912 1.23230 0.94714 0.97737 0.94537 1.22421 1.01362 0.96826 0.95543 1.22136 0.99558 0.95060 0.95496 0.89324 1.21268 0.98934 0.96803 0.82254 1.45979 1.51626 1.29531 1.12035 1.20325 0.77845 0.84065 0.86091 1.90701 1.44976 1.23560 1.80089 1.23527 1.06168 1.05111 0.95533 1.85402 1.58160 1.32969 1.06978 1.22908 1.34874 1.13027 0.97433 0.90873 1.25002 0.94559 0.95212 0.98892 1.70031 1.28274 1.20559 1.31449 0.86108 0.78038 0.79471 0.81824 1.19608 1.20551 1.20580 1.23224 1.02160 0.93128 0.90960 1.74030 1.03491 1.15900 1.18775 0.88924 0.87835 0.87946 0.78697 0.88039 0.89036 0.90016 0.92360 0.90697 0.90852 0.92286 0.91593 0.76785 0.89271 0.89186 0.92246 0.92523 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.64 11.57 59.85 0.69 1.33 16 2 N -0.16 -1.58 4.35 -16.64 -0.07 -1.65 16 3 N -0.29 -3.14 12.05 30.67 0.37 -2.77 16 4 C -0.02 -0.16 10.67 -17.21 -0.18 -0.35 16 5 C -0.03 -0.31 4.67 -82.25 -0.38 -0.70 16 6 C 0.13 0.91 6.17 -4.98 -0.03 0.88 16 7 N -0.49 -3.98 5.65 -231.40 -1.31 -5.28 16 8 C 0.03 0.22 6.32 -2.18 -0.01 0.21 16 9 C -0.12 -1.08 6.33 -25.35 -0.16 -1.24 16 10 C -0.10 -0.93 3.13 -89.24 -0.28 -1.21 16 11 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 12 C 0.13 1.63 4.76 -4.04 -0.02 1.61 16 13 N -0.74 -10.09 5.32 -60.30 -0.32 -10.41 16 14 C 0.53 10.14 7.85 -10.98 -0.09 10.05 16 15 O -0.52 -12.13 15.86 5.56 0.09 -12.05 16 16 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.03 0.29 5.73 -2.18 -0.01 0.27 16 27 N -0.28 -2.92 10.83 33.71 0.37 -2.56 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.60 6.23 -51.93 -0.32 0.27 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.73 7.63 -51.92 -0.40 0.33 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.40 4.28 8.32 -40.82 -0.34 3.94 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 0.56 4.78 -51.93 -0.25 0.31 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -37.34 383.98 -8.42 -45.76 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.77 Total: 1.28 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.06 Total: -5.08 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.23 Total: -48.27 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.34 -8.42 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713522978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.788 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds