Wall clock time and date at job start Tue Mar 31 2020 22:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28598 * 124.62335 * 2 1 4 4 C 1.31380 * 108.72332 * 179.72006 * 3 2 1 5 5 C 1.39680 * 105.89595 * 0.42729 * 4 3 2 6 6 C 1.50697 * 127.04806 * 179.83564 * 5 4 3 7 7 N 1.46901 * 109.47110 * 94.71503 * 6 5 4 8 8 C 1.48554 * 110.99852 * 69.87140 * 7 6 5 9 9 C 1.54383 * 104.59576 * 200.96010 * 8 7 6 10 10 C 1.54259 * 105.05950 * 23.85952 * 9 8 7 11 11 H 1.09009 * 110.32168 * 241.00197 * 10 9 8 12 12 C 1.52997 * 110.32700 * 118.89546 * 10 9 8 13 13 N 1.46497 * 109.46983 * 66.45289 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99854 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00154 * 22 20 18 26 26 C 1.48564 * 110.99610 * 314.45688 * 7 6 5 27 27 N 1.28605 * 124.61870 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46765 * 270.00019 * 1 2 3 29 29 H 1.09005 * 109.47014 * 29.99255 * 1 2 3 30 30 H 1.08997 * 109.47228 * 149.99963 * 1 2 3 31 31 H 1.07995 * 127.05258 * 180.27131 * 4 3 2 32 32 H 1.09005 * 109.47239 * 334.71679 * 6 5 4 33 33 H 1.08996 * 109.47195 * 214.71554 * 6 5 4 34 34 H 1.09003 * 110.41081 * 82.18228 * 8 7 6 35 35 H 1.09001 * 110.51574 * 319.79365 * 8 7 6 36 36 H 1.09002 * 110.32453 * 264.95749 * 9 8 7 37 37 H 1.09008 * 110.40963 * 142.79307 * 9 8 7 38 38 H 1.09001 * 109.46832 * 306.45106 * 12 10 9 39 39 H 1.09002 * 109.47153 * 186.45297 * 12 10 9 40 40 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 41 41 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 42 42 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 43 43 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 44 44 H 1.08991 * 110.41459 * 40.26239 * 26 7 6 45 45 H 1.09007 * 110.41091 * 277.81211 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1957 1.0582 0.0000 4 6 3.4592 0.6983 0.0061 5 6 3.4591 -0.6985 -0.0001 6 6 4.6618 -1.6065 -0.0002 7 7 4.9796 -1.9984 1.3794 8 6 3.9457 -2.9157 1.9238 9 6 4.0949 -2.8045 3.4564 10 6 4.7496 -1.4285 3.6965 11 1 5.7128 -1.5489 4.1926 12 6 3.8282 -0.5406 4.5352 13 7 3.6996 -1.1042 5.8813 14 6 2.9307 -0.4865 6.7998 15 8 2.3456 0.5362 6.5121 16 6 2.7988 -1.0659 8.1847 17 16 1.7086 -0.0156 9.1769 18 6 1.7334 -0.9012 10.6998 19 1 2.3150 -1.8070 10.7884 20 6 1.0045 -0.4355 11.7855 21 7 0.2953 0.6680 11.6773 22 14 1.0302 -1.3749 13.3999 23 1 1.8966 -2.5731 13.2617 24 1 1.5637 -0.4990 14.4738 25 1 -0.3496 -1.7998 13.7474 26 6 4.9410 -0.8242 2.2887 27 7 2.1956 -1.0584 -0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 4.3211 1.3490 0.0118 32 1 5.5131 -1.0818 -0.4341 33 1 4.4447 -2.4969 -0.5901 34 1 4.1345 -3.9383 1.5967 35 1 2.9505 -2.5962 1.6145 36 1 4.7374 -3.6004 3.8330 37 1 3.1178 -2.8479 3.9376 38 1 2.8454 -0.4916 4.0663 39 1 4.2503 0.4623 4.6000 40 1 4.1672 -1.9223 6.1113 41 1 2.3774 -2.0691 8.1202 42 1 3.7816 -1.1141 8.6535 43 1 -0.2138 0.9937 12.4361 44 1 4.1024 -0.1754 2.0364 45 1 5.8793 -0.2719 2.2365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713522978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:24 Heat of formation + Delta-G solvation = 52.346834 kcal Electronic energy + Delta-G solvation = -26624.886490 eV Core-core repulsion = 22805.292256 eV Total energy + Delta-G solvation = -3819.594234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.62197 -40.91759 -39.93392 -36.48627 -34.89628 -34.59704 -33.77332 -32.83569 -31.25249 -30.07722 -28.87452 -27.72716 -27.00527 -25.34563 -23.54740 -22.80756 -21.87276 -21.27812 -20.96167 -19.83250 -18.26380 -18.10374 -17.77911 -17.50921 -17.01802 -16.89224 -16.53146 -16.24118 -15.89370 -15.72417 -15.37937 -15.14486 -14.73800 -14.50027 -14.41638 -14.07838 -13.74899 -13.69648 -13.42948 -13.32395 -13.17410 -12.92123 -12.90606 -12.78106 -12.59574 -12.23339 -12.00007 -11.86045 -11.83065 -11.71634 -11.53292 -11.28665 -11.17050 -11.00657 -10.29190 -10.19368 -10.14872 -9.63394 -8.68950 -8.36049 -6.14455 0.77498 1.25413 1.37072 1.40985 1.45348 1.46081 1.56556 1.57539 2.22504 2.26817 2.98294 3.00642 3.18732 3.29841 3.62212 3.66106 3.71417 3.86492 3.99373 4.12993 4.20228 4.26112 4.26870 4.32145 4.37739 4.40650 4.48238 4.48613 4.56802 4.64086 4.66550 4.79812 4.83029 4.91795 5.04431 5.06964 5.18049 5.22119 5.25354 5.39734 5.41125 5.70771 5.79496 5.94342 6.18978 6.46384 7.05329 7.19934 7.30134 8.73535 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.002124 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.815303 B =13176.625777 C =14035.549689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.167 5.167 3 N -0.316 5.316 4 C -0.021 4.021 5 C -0.035 4.035 6 C 0.131 3.869 7 N -0.488 5.488 8 C 0.026 3.974 9 C -0.122 4.122 10 C -0.093 4.093 11 H 0.108 0.892 12 C 0.137 3.863 13 N -0.709 5.709 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.036 3.964 27 N -0.299 5.299 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.221 0.779 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.038 0.962 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.039 0.961 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 -8.694 -27.139 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.068 5.068 3 N -0.157 5.157 4 C -0.204 4.204 5 C -0.199 4.199 6 C 0.001 3.999 7 N -0.210 5.210 8 C -0.102 4.102 9 C -0.160 4.160 10 C -0.112 4.112 11 H 0.126 0.874 12 C 0.013 3.987 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.448 6.448 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.093 4.093 27 N -0.143 5.143 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.237 0.763 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.255 0.745 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.942 -7.140 -27.611 29.888 hybrid contribution 0.205 -0.973 1.412 1.728 sum 9.147 -8.113 -26.199 28.911 Atomic orbital electron populations 1.22447 0.68716 1.07367 1.05683 1.48349 1.09953 0.98990 1.49546 1.74060 1.05014 1.16913 1.19702 1.25180 0.94738 0.95241 1.05242 1.24410 0.93659 0.95394 1.06452 1.20996 0.90472 0.96920 0.91516 1.65814 1.42608 1.11315 1.01273 1.23212 0.93980 0.98459 0.94519 1.22417 1.00855 0.97067 0.95619 1.22094 0.99309 0.94441 0.95390 0.87413 1.21306 0.98586 0.97393 0.81435 1.45706 1.49621 1.29376 1.11593 1.20140 0.78147 0.83596 0.86330 1.90692 1.47401 1.25876 1.80816 1.23362 1.05320 1.04117 0.95118 1.85609 1.61233 1.36590 1.09320 1.23230 1.35129 1.13246 0.97576 0.89822 1.26159 0.93820 0.96135 1.03190 1.70195 1.29306 1.22519 1.32850 0.84879 0.78443 0.78251 0.76208 1.17936 1.19900 1.19956 1.23217 1.02390 0.93157 0.90489 1.74002 1.04379 1.16445 1.19428 0.89221 0.86427 0.86276 0.76284 0.85549 0.88529 0.88908 0.94340 0.88857 0.92421 0.94629 0.92377 0.74529 0.87177 0.86958 0.91993 0.94258 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 11.57 127.77 1.48 2.69 16 2 N -0.17 -3.44 4.35 -206.55 -0.90 -4.34 16 3 N -0.32 -7.03 12.05 -56.86 -0.69 -7.72 16 4 C -0.02 -0.37 10.67 85.11 0.91 0.53 16 5 C -0.03 -0.60 4.67 42.98 0.20 -0.40 16 6 C 0.13 1.54 6.17 85.56 0.53 2.07 16 7 N -0.49 -6.63 5.65 -886.03 -5.01 -11.63 16 8 C 0.03 0.41 6.32 86.45 0.55 0.96 16 9 C -0.12 -1.85 6.33 31.49 0.20 -1.65 16 10 C -0.09 -1.47 3.13 -9.90 -0.03 -1.50 16 11 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 12 C 0.14 3.27 4.76 86.38 0.41 3.68 16 13 N -0.71 -18.32 5.32 -463.06 -2.46 -20.78 16 14 C 0.53 20.13 7.85 87.66 0.69 20.82 16 15 O -0.57 -27.36 15.86 -3.03 -0.05 -27.41 16 16 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 17 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 18 C -0.54 -31.18 9.50 67.96 0.65 -30.54 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.04 0.53 5.73 86.45 0.50 1.03 16 27 N -0.30 -6.27 10.83 -47.25 -0.51 -6.78 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.12 1.06 8.14 -2.38 -0.02 1.05 16 30 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 0.77 6.23 -2.39 -0.01 0.75 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.07 7.63 -2.38 -0.02 1.05 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.42 7.74 8.32 -92.71 -0.77 6.97 16 41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 44 H 0.04 0.74 4.78 -2.39 -0.01 0.73 16 45 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -83.71 383.98 -1.25 -84.96 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.24 Total: 19.79 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 6.97 Total: -5.86 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -9.28 Total: -107.36 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -83.71 -1.25 -84.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713522978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.309 kcal (2) G-P(sol) polarization free energy of solvation -83.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds