Wall clock time and date at job start Tue Mar 31 2020 22:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00442 * 3 2 1 5 5 N 1.46901 * 109.46769 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99793 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46807 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.21775 * 54.29972 * 7 6 5 9 9 C 1.54434 * 110.23877 * 176.21676 * 7 6 5 10 10 C 1.54582 * 101.66561 * 93.51529 * 9 7 6 11 11 C 1.51476 * 104.21948 * 24.96421 * 10 9 7 12 12 N 1.31163 * 141.93938 * 163.56808 * 11 10 9 13 13 C 1.33161 * 109.83548 * 180.14366 * 12 11 10 14 14 N 1.30649 * 108.94854 * 359.91961 * 13 12 11 15 15 N 1.34315 * 110.08115 * 343.54386 * 11 10 9 16 16 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 17 17 O 1.21285 * 119.99996 * 179.97438 * 16 2 1 18 18 C 1.50698 * 120.00318 * 0.02562 * 16 2 1 19 19 S 1.81001 * 109.47250 * 179.97438 * 18 16 2 20 20 C 1.76202 * 99.99891 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99886 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99968 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47078 * 60.00234 * 24 22 20 26 26 H 1.48494 * 109.46822 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47085 * 300.00009 * 24 22 20 28 28 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 30 30 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 32 32 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99493 * 4 3 2 34 34 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 35 35 H 1.00899 * 111.00283 * 56.04461 * 5 4 3 36 36 H 1.09006 * 109.46661 * 299.99622 * 6 5 4 37 37 H 1.08995 * 109.47087 * 60.00099 * 6 5 4 38 38 H 1.09005 * 110.98953 * 211.60750 * 9 7 6 39 39 H 1.08999 * 110.98789 * 335.38272 * 9 7 6 40 40 H 1.09005 * 110.47917 * 143.64955 * 10 9 7 41 41 H 1.09000 * 110.47825 * 266.14593 * 10 9 7 42 42 H 1.08002 * 125.52495 * 179.89442 * 13 12 11 43 43 H 1.09006 * 109.47054 * 299.99977 * 18 16 2 44 44 H 1.09003 * 109.47164 * 59.99309 * 18 16 2 45 45 H 0.96995 * 119.99591 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1874 2.9823 1.4425 6 6 3.4502 3.4384 2.8140 7 6 4.2160 4.7624 2.7731 8 1 3.6779 5.4902 2.1659 9 6 4.4191 5.3064 4.2041 10 6 5.8117 4.7375 4.5601 11 6 6.4828 4.5297 3.2181 12 7 7.6584 4.3328 2.6708 13 6 7.5301 4.2293 1.3495 14 7 6.2686 4.3571 1.0344 15 7 5.5668 4.5518 2.2360 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3855 -2.4723 -0.0017 19 16 2.5617 -3.8480 -0.0029 20 6 1.4416 -5.2082 -0.0034 21 1 0.3764 -5.0305 -0.0033 22 6 1.9284 -6.5081 -0.0048 23 7 3.2268 -6.7246 -0.0054 24 14 0.7409 -7.9501 -0.0060 25 1 -0.1143 -7.8860 -1.2182 26 1 1.5071 -9.2221 -0.0069 27 1 -0.1138 -7.8885 1.2067 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5139 33 1 1.5001 1.8407 1.9564 34 1 3.0415 0.9507 1.9563 35 1 2.6919 3.6863 0.9163 36 1 2.5044 3.5813 3.3368 37 1 4.0457 2.6907 3.3378 38 1 4.4296 6.3964 4.2096 39 1 3.6553 4.9220 4.8800 40 1 6.3736 5.4527 5.1609 41 1 5.7125 3.7903 5.0901 42 1 8.3380 4.0666 0.6514 43 1 0.7585 -2.5307 0.8881 44 1 0.7591 -2.5294 -0.8919 45 1 3.5669 -7.6330 -0.0061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713572400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:52 Heat of formation + Delta-G solvation = 78.920100 kcal Electronic energy + Delta-G solvation = -26175.103291 eV Core-core repulsion = 22356.661360 eV Total energy + Delta-G solvation = -3818.441931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.61734 -39.53310 -38.23347 -36.30471 -34.93442 -32.43039 -32.22655 -31.00646 -29.91863 -29.10753 -27.67101 -26.25057 -25.47723 -24.22558 -22.90947 -22.48565 -21.03133 -20.68352 -19.18614 -17.68543 -17.04210 -16.86128 -16.55917 -16.06678 -15.70355 -15.34675 -15.15031 -14.91426 -14.80695 -14.64640 -14.32899 -14.18868 -13.73894 -13.40784 -13.27274 -12.98759 -12.90180 -12.74534 -12.54971 -12.37908 -12.21997 -11.99880 -11.78368 -11.65960 -11.60454 -11.19394 -11.04606 -11.04294 -10.76707 -10.06984 -9.88285 -9.81903 -9.59088 -9.37447 -9.06143 -8.79518 -8.56674 -8.22805 -6.50415 -6.21337 -3.92352 1.49662 1.91062 2.83389 2.84589 3.04144 3.20010 3.22911 3.26136 3.28830 3.53193 3.73802 3.88292 4.01485 4.20149 4.29972 4.46152 4.61759 4.72487 4.78024 4.88556 4.96829 4.97365 5.06597 5.08502 5.12995 5.13430 5.19575 5.23675 5.28445 5.35250 5.38687 5.56625 5.64529 5.80783 5.88325 5.96285 6.11622 6.28212 6.33892 6.42804 6.50057 6.67918 6.98530 7.50596 7.58947 8.03262 8.34767 8.55490 9.23451 10.86039 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002003 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.965355 B =13975.679950 C =14678.911136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.122 3.878 4 C 0.049 3.951 5 N -0.678 5.678 6 C 0.051 3.949 7 C 0.156 3.844 8 H 0.101 0.899 9 C -0.125 4.125 10 C -0.047 4.047 11 C 0.241 3.759 12 N -0.534 5.534 13 C 0.192 3.808 14 N -0.274 5.274 15 N -0.377 5.377 16 C 0.531 3.469 17 O -0.510 6.510 18 C -0.150 4.150 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.340 0.660 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.220 0.780 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 28.220 8.786 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C -0.002 4.002 4 C -0.081 4.081 5 N -0.309 5.309 6 C -0.079 4.079 7 C 0.053 3.947 8 H 0.119 0.881 9 C -0.165 4.165 10 C -0.087 4.087 11 C -0.036 4.036 12 N -0.263 5.263 13 C -0.110 4.110 14 N -0.100 5.100 15 N -0.168 5.168 16 C 0.319 3.681 17 O -0.383 6.383 18 C -0.300 4.300 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.158 0.842 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.236 0.764 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.832 27.704 7.957 28.882 hybrid contribution -3.216 -0.702 0.242 3.301 sum -5.048 27.002 8.199 28.667 Atomic orbital electron populations 1.21757 0.79712 1.02938 1.01806 1.47828 1.06748 1.05635 1.76041 1.21216 0.98508 0.84733 0.95700 1.22323 0.95907 0.91605 0.98302 1.60212 1.52314 1.05611 1.12796 1.22361 0.98778 0.95422 0.91356 1.22020 0.79853 0.98155 0.94669 0.88066 1.22893 0.97445 1.02408 0.93719 1.20808 0.93659 1.04102 0.90116 1.25178 0.86758 0.97546 0.94098 1.70057 1.23474 1.24892 1.07833 1.26125 0.94049 0.99340 0.91517 1.78088 1.05448 1.23986 1.02493 1.51373 1.08330 1.52300 1.04779 1.20389 0.87999 0.84570 0.75177 1.90724 1.13675 1.86698 1.47191 1.23555 1.04544 0.97262 1.04653 1.85443 1.08005 0.93316 1.96701 1.22813 0.94245 0.92224 1.59135 0.91014 1.24997 0.95677 0.98373 0.94545 1.70009 1.11749 1.21783 1.46685 0.86224 0.80181 0.80319 0.78773 1.19931 1.20792 1.19961 0.92641 0.90616 0.91684 0.91148 0.88862 0.95199 0.90288 0.84242 0.92748 0.89901 0.88644 0.87224 0.87642 0.87563 0.76368 0.89334 0.89270 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.24 59.85 0.61 1.43 16 2 N -0.63 -8.84 2.87 -181.58 -0.52 -9.36 16 3 C 0.12 1.51 5.67 -4.04 -0.02 1.49 16 4 C 0.05 0.54 6.01 -3.82 -0.02 0.52 16 5 N -0.68 -6.49 6.48 -113.78 -0.74 -7.22 16 6 C 0.05 0.37 5.25 -3.82 -0.02 0.35 16 7 C 0.16 0.98 3.68 -66.97 -0.25 0.73 16 8 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 9 C -0.13 -0.35 6.70 -25.15 -0.17 -0.51 16 10 C -0.05 -0.24 6.86 -26.67 -0.18 -0.42 16 11 C 0.24 2.55 8.66 -155.14 -1.34 1.21 16 12 N -0.53 -6.99 11.20 -11.71 -0.13 -7.12 16 13 C 0.19 2.40 13.03 -91.94 -1.20 1.20 16 14 N -0.27 -3.70 12.79 29.26 0.37 -3.32 16 15 N -0.38 -4.05 4.51 -50.59 -0.23 -4.28 16 16 C 0.53 10.30 7.69 -10.99 -0.08 10.21 16 17 O -0.51 -12.04 15.44 5.55 0.09 -11.96 16 18 C -0.15 -3.07 4.71 36.00 0.17 -2.90 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 24 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 30 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.09 1.46 7.42 -51.93 -0.39 1.07 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.34 2.61 8.73 -39.29 -0.34 2.27 16 36 H 0.05 0.25 8.12 -51.93 -0.42 -0.17 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.11 0.05 7.88 -51.93 -0.41 -0.36 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.22 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.09 1.67 7.40 -51.91 -0.38 1.28 16 44 H 0.09 1.70 8.11 -51.91 -0.42 1.28 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -39.76 390.99 -10.96 -50.73 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.89 Total: -0.48 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.31 Total: 0.25 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.51 Total: -56.97 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.76 -10.96 -50.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713572400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.646 kcal (2) G-P(sol) polarization free energy of solvation -39.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds