Wall clock time and date at job start Tue Mar 31 2020 22:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00442 * 3 2 1 5 5 N 1.46901 * 109.46769 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99793 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46807 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.21775 * 54.29972 * 7 6 5 9 9 C 1.54434 * 110.23877 * 176.21676 * 7 6 5 10 10 C 1.54582 * 101.66561 * 93.51529 * 9 7 6 11 11 C 1.51476 * 104.21948 * 24.96421 * 10 9 7 12 12 N 1.31163 * 141.93938 * 163.56808 * 11 10 9 13 13 C 1.33161 * 109.83548 * 180.14366 * 12 11 10 14 14 N 1.30649 * 108.94854 * 359.91961 * 13 12 11 15 15 N 1.34315 * 110.08115 * 343.54386 * 11 10 9 16 16 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 17 17 O 1.21285 * 119.99996 * 179.97438 * 16 2 1 18 18 C 1.50698 * 120.00318 * 0.02562 * 16 2 1 19 19 S 1.81001 * 109.47250 * 179.97438 * 18 16 2 20 20 C 1.76202 * 99.99891 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99886 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99968 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47078 * 60.00234 * 24 22 20 26 26 H 1.48494 * 109.46822 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47085 * 300.00009 * 24 22 20 28 28 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 30 30 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 31 31 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 32 32 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99493 * 4 3 2 34 34 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 35 35 H 1.00899 * 111.00283 * 56.04461 * 5 4 3 36 36 H 1.09006 * 109.46661 * 299.99622 * 6 5 4 37 37 H 1.08995 * 109.47087 * 60.00099 * 6 5 4 38 38 H 1.09005 * 110.98953 * 211.60750 * 9 7 6 39 39 H 1.08999 * 110.98789 * 335.38272 * 9 7 6 40 40 H 1.09005 * 110.47917 * 143.64955 * 10 9 7 41 41 H 1.09000 * 110.47825 * 266.14593 * 10 9 7 42 42 H 1.08002 * 125.52495 * 179.89442 * 13 12 11 43 43 H 1.09006 * 109.47054 * 299.99977 * 18 16 2 44 44 H 1.09003 * 109.47164 * 59.99309 * 18 16 2 45 45 H 0.96995 * 119.99591 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1874 2.9823 1.4425 6 6 3.4502 3.4384 2.8140 7 6 4.2160 4.7624 2.7731 8 1 3.6779 5.4902 2.1659 9 6 4.4191 5.3064 4.2041 10 6 5.8117 4.7375 4.5601 11 6 6.4828 4.5297 3.2181 12 7 7.6584 4.3328 2.6708 13 6 7.5301 4.2293 1.3495 14 7 6.2686 4.3571 1.0344 15 7 5.5668 4.5518 2.2360 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3855 -2.4723 -0.0017 19 16 2.5617 -3.8480 -0.0029 20 6 1.4416 -5.2082 -0.0034 21 1 0.3764 -5.0305 -0.0033 22 6 1.9284 -6.5081 -0.0048 23 7 3.2268 -6.7246 -0.0054 24 14 0.7409 -7.9501 -0.0060 25 1 -0.1143 -7.8860 -1.2182 26 1 1.5071 -9.2221 -0.0069 27 1 -0.1138 -7.8885 1.2067 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0284 -0.5138 32 1 3.1498 1.1384 -0.5139 33 1 1.5001 1.8407 1.9564 34 1 3.0415 0.9507 1.9563 35 1 2.6919 3.6863 0.9163 36 1 2.5044 3.5813 3.3368 37 1 4.0457 2.6907 3.3378 38 1 4.4296 6.3964 4.2096 39 1 3.6553 4.9220 4.8800 40 1 6.3736 5.4527 5.1609 41 1 5.7125 3.7903 5.0901 42 1 8.3380 4.0666 0.6514 43 1 0.7585 -2.5307 0.8881 44 1 0.7591 -2.5294 -0.8919 45 1 3.5669 -7.6330 -0.0061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713572400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:51 Heat of formation + Delta-G solvation = 49.639073 kcal Electronic energy + Delta-G solvation = -26176.373012 eV Core-core repulsion = 22356.661360 eV Total energy + Delta-G solvation = -3819.711652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.37214 -40.91700 -38.88458 -37.31300 -35.97484 -34.60380 -32.99340 -32.09275 -30.69468 -30.15963 -28.57238 -27.71552 -27.14214 -24.94945 -23.59425 -23.42452 -21.67489 -21.39861 -20.63904 -19.55790 -18.12985 -17.77781 -17.40688 -17.20725 -16.89807 -16.78636 -16.30975 -16.06182 -15.80447 -15.59528 -15.26389 -15.18299 -14.68184 -14.61480 -14.32021 -14.25273 -13.97354 -13.60647 -13.44888 -13.26091 -13.20127 -13.12971 -12.96235 -12.86320 -12.65307 -12.51478 -12.28197 -12.21857 -12.01329 -11.74934 -11.14354 -10.96240 -10.95080 -10.71339 -10.36587 -10.29178 -9.78117 -9.43402 -8.70967 -8.35883 -6.15535 0.70068 1.23166 1.29197 1.43140 1.44153 1.53024 1.54256 1.96408 2.03609 2.26067 2.68268 2.98025 3.06396 3.25369 3.43249 3.60547 3.68441 3.75126 3.97549 3.98113 4.04532 4.16149 4.18733 4.30414 4.33729 4.37248 4.40870 4.43989 4.44903 4.65163 4.68147 4.81384 4.83862 4.89842 4.93126 4.97091 5.05122 5.39363 5.46027 5.50494 5.56638 5.72613 5.87817 6.17683 6.22514 6.39232 7.04628 7.11404 7.19841 8.73301 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002003 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.965355 B =13975.679950 C =14678.911136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.122 3.878 4 C 0.065 3.935 5 N -0.699 5.699 6 C 0.054 3.946 7 C 0.146 3.854 8 H 0.116 0.884 9 C -0.106 4.106 10 C -0.048 4.048 11 C 0.231 3.769 12 N -0.574 5.574 13 C 0.179 3.821 14 N -0.315 5.315 15 N -0.382 5.382 16 C 0.527 3.473 17 O -0.567 6.567 18 C -0.120 4.120 19 S -0.160 6.160 20 C -0.545 4.545 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 1.001 2.999 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.353 0.647 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.237 0.763 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 30.078 10.245 32.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.345 5.345 3 C -0.001 4.001 4 C -0.066 4.066 5 N -0.333 5.333 6 C -0.076 4.076 7 C 0.045 3.955 8 H 0.134 0.866 9 C -0.145 4.145 10 C -0.088 4.088 11 C -0.046 4.046 12 N -0.303 5.303 13 C -0.124 4.124 14 N -0.142 5.142 15 N -0.173 5.173 16 C 0.314 3.686 17 O -0.445 6.445 18 C -0.272 4.272 19 S 0.067 5.933 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.184 1.184 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.173 0.827 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.253 0.747 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.148 29.629 9.425 31.694 hybrid contribution -1.956 -1.116 -0.209 2.262 sum -8.105 28.513 9.216 31.042 Atomic orbital electron populations 1.22129 0.76442 1.04952 1.03507 1.47815 1.08663 1.04472 1.73525 1.21340 0.97277 0.84572 0.96872 1.22020 0.96472 0.91293 0.96786 1.60090 1.52762 1.05494 1.14907 1.22409 1.00143 0.95017 0.90040 1.22517 0.77967 0.98109 0.96948 0.86630 1.23016 0.96526 1.03518 0.91463 1.21148 0.94739 1.05300 0.87583 1.26249 0.86217 0.95832 0.96264 1.70015 1.25484 1.26596 1.08245 1.26564 0.94511 0.99220 0.92072 1.77922 1.06082 1.25333 1.04876 1.51705 1.09975 1.51698 1.03920 1.20257 0.87278 0.85743 0.75289 1.90708 1.15993 1.87518 1.50289 1.23358 1.02574 0.94765 1.06459 1.85692 1.12961 0.97609 1.97052 1.23153 0.94580 0.92477 1.59030 0.89715 1.26189 0.97653 1.01816 0.93683 1.70192 1.14258 1.22551 1.47922 0.84969 0.77521 0.75685 0.79606 1.18536 1.20474 1.18438 0.91042 0.90634 0.87752 0.86941 0.93040 0.92207 0.94796 0.82731 0.88911 0.92479 0.86603 0.83867 0.85685 0.86765 0.74740 0.87168 0.87410 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.24 127.77 1.31 2.46 16 2 N -0.61 -16.29 2.87 -846.77 -2.43 -18.72 16 3 C 0.12 2.89 5.67 86.38 0.49 3.38 16 4 C 0.06 1.35 6.01 86.30 0.52 1.87 16 5 N -0.70 -12.50 6.48 -513.88 -3.33 -15.83 16 6 C 0.05 0.65 5.25 86.30 0.45 1.10 16 7 C 0.15 1.49 3.68 45.41 0.17 1.66 16 8 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 9 C -0.11 -0.18 6.70 31.62 0.21 0.04 16 10 C -0.05 -0.39 6.86 30.63 0.21 -0.18 16 11 C 0.23 4.88 8.66 138.41 1.20 6.08 16 12 N -0.57 -15.78 11.20 -190.96 -2.14 -17.92 16 13 C 0.18 4.81 13.03 180.81 2.36 7.16 16 14 N -0.32 -8.94 12.79 -61.33 -0.78 -9.73 16 15 N -0.38 -8.17 4.51 -313.96 -1.42 -9.59 16 16 C 0.53 20.70 7.69 87.66 0.67 21.38 16 17 O -0.57 -28.40 15.44 -3.05 -0.05 -28.45 16 18 C -0.12 -4.92 4.71 71.24 0.34 -4.59 16 19 S -0.16 -9.18 20.57 -56.49 -1.16 -10.35 16 20 C -0.54 -31.44 9.50 67.95 0.65 -30.80 16 21 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 22 C 0.01 0.64 5.49 84.86 0.47 1.11 16 23 N -0.91 -57.10 13.22 21.65 0.29 -56.81 16 24 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 30 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 31 H 0.11 1.73 8.07 -2.39 -0.02 1.71 16 32 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.35 4.59 8.73 -89.69 -0.78 3.81 16 36 H 0.09 0.45 8.12 -2.38 -0.02 0.43 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.12 -0.19 8.14 -2.38 -0.02 -0.21 16 39 H 0.14 -0.65 7.88 -2.39 -0.02 -0.67 16 40 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.24 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.11 4.00 7.40 -2.39 -0.02 3.98 16 44 H 0.11 3.98 8.11 -2.39 -0.02 3.96 16 45 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -95.51 390.99 0.25 -95.25 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.22 Total: 15.67 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 9.03 Total: 10.67 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -9.82 Total: -128.60 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.16 Total: -10.35 kcal Total: -95.51 0.25 -95.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713572400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.890 kcal (2) G-P(sol) polarization free energy of solvation -95.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds