Wall clock time and date at job start Tue Mar 31 2020 23:03:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86798 * 119.99910 * 2 1
4 4 H 1.48502 * 109.46925 * 239.99796 * 3 2 1
5 5 H 1.48494 * 109.47126 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47446 * 120.00029 * 3 2 1
7 7 C 1.38813 * 120.00329 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00348 * 197.02151 * 7 2 1
9 9 N 1.36941 * 120.00051 * 17.01485 * 7 2 1
10 10 C 1.47079 * 120.88531 * 206.58768 * 9 7 2
11 11 C 1.53237 * 108.51770 * 231.16239 * 10 9 7
12 12 N 1.46897 * 109.34631 * 306.16622 * 11 10 9
13 13 C 1.46900 * 111.00220 * 187.25433 * 12 11 10
14 14 C 1.53002 * 109.46715 * 170.00178 * 13 12 11
15 15 N 1.46504 * 109.46559 * 180.02562 * 14 13 12
16 16 C 1.34776 * 119.99668 * 180.02562 * 15 14 13
17 17 O 1.21573 * 120.00467 * 0.02562 * 16 15 14
18 18 C 1.47700 * 119.99911 * 180.02562 * 16 15 14
19 19 C 1.39654 * 120.15375 * 0.02562 * 18 16 15
20 20 C 1.38075 * 119.84891 * 179.97438 * 19 18 16
21 21 F 1.35100 * 119.91497 * 179.97438 * 20 19 18
22 22 C 1.38653 * 120.16468 * 0.02562 * 20 19 18
23 23 C 1.38184 * 120.31770 * 0.02562 * 22 20 19
24 24 C 1.38310 * 120.14573 * 359.97438 * 23 22 20
25 25 F 1.35095 * 120.08501 * 180.27732 * 24 23 22
26 26 C 1.46898 * 111.26413 * 63.10823 * 12 11 10
27 27 C 1.47083 * 120.87629 * 26.56653 * 9 7 2
28 28 H 0.96994 * 120.00275 * 359.97438 * 1 2 3
29 29 H 1.08998 * 109.62330 * 111.45564 * 10 9 7
30 30 H 1.08999 * 109.78408 * 350.96716 * 10 9 7
31 31 H 1.09003 * 109.48813 * 186.20881 * 11 10 9
32 32 H 1.08997 * 109.49600 * 66.13500 * 11 10 9
33 33 H 1.09003 * 109.46986 * 50.00397 * 13 12 11
34 34 H 1.08997 * 109.47277 * 290.00321 * 13 12 11
35 35 H 1.09003 * 109.47214 * 60.00359 * 14 13 12
36 36 H 1.08997 * 109.47365 * 300.00089 * 14 13 12
37 37 H 0.96997 * 120.00595 * 0.02562 * 15 14 13
38 38 H 1.07998 * 120.07290 * 359.96446 * 19 18 16
39 39 H 1.08002 * 119.83892 * 180.02562 * 22 20 19
40 40 H 1.08003 * 119.92435 * 180.02562 * 23 22 20
41 41 H 1.08998 * 109.49470 * 56.85606 * 26 12 11
42 42 H 1.08995 * 109.49453 * 176.94015 * 26 12 11
43 43 H 1.08999 * 109.62941 * 248.54792 * 27 9 7
44 44 H 1.09002 * 109.63028 * 9.12952 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 3.1039 1.6963 -1.2125
5 1 1.2852 2.7464 -0.0006
6 1 3.1039 1.6965 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0548 -1.2225 0.2743
9 7 1.3706 -2.3623 -0.3460
10 6 1.8310 -3.6610 0.1686
11 6 2.0023 -4.6201 -1.0141
12 7 0.7548 -4.6658 -1.7883
13 6 0.8184 -5.7009 -2.8287
14 6 -0.5693 -5.8907 -3.4447
15 7 -0.5059 -6.9234 -4.4818
16 6 -1.6173 -7.2608 -5.1656
17 8 -2.6723 -6.7078 -4.9220
18 6 -1.5536 -8.3024 -6.2108
19 6 -0.3436 -8.9400 -6.4929
20 6 -0.2914 -9.9132 -7.4710
21 9 0.8785 -10.5306 -7.7454
22 6 -1.4364 -10.2577 -8.1730
23 6 -2.6371 -9.6304 -7.9002
24 6 -2.7042 -8.6537 -6.9231
25 9 -3.8798 -8.0452 -6.6536
26 6 0.4401 -3.3538 -2.3695
27 6 0.2047 -2.3427 -1.2423
28 1 -0.4850 0.8400 0.0004
29 1 1.0920 -4.0628 0.8619
30 1 2.7850 -3.5375 0.6812
31 1 2.2364 -5.6177 -0.6424
32 1 2.8137 -4.2697 -1.6520
33 1 1.1514 -6.6401 -2.3869
34 1 1.5211 -5.3945 -3.6036
35 1 -0.9023 -4.9515 -3.8865
36 1 -1.2720 -6.1970 -2.6698
37 1 0.3358 -7.3644 -4.6765
38 1 0.5492 -8.6724 -5.9474
39 1 -1.3896 -11.0200 -8.9367
40 1 -3.5251 -9.9039 -8.4506
41 1 1.2732 -3.0210 -2.9885
42 1 -0.4589 -3.4329 -2.9807
43 1 -0.6906 -2.6178 -0.6847
44 1 0.0842 -1.3450 -1.6647
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713806728.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:44
Heat of formation + Delta-G solvation = -57.828038 kcal
Electronic energy + Delta-G solvation = -28500.327186 eV
Core-core repulsion = 24089.822273 eV
Total energy + Delta-G solvation = -4410.504913 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-49.48857 -49.26648 -40.39364 -38.72082 -38.13907 -35.53937 -34.09880 -32.38580
-31.34339 -30.56819 -29.95875 -28.88001 -26.12244 -24.76892 -23.54780 -23.00400
-22.56732 -21.41145 -21.06000 -19.14384 -18.80552 -17.93521 -17.71109 -16.84880
-16.59620 -16.47509 -16.00752 -15.86480 -15.52093 -15.15673 -14.94014 -14.78165
-14.54754 -14.36890 -14.08585 -13.75542 -13.65999 -13.46558 -13.40792 -13.07282
-12.93727 -12.62236 -12.37878 -12.06692 -11.67668 -11.45766 -11.35781 -11.05978
-10.73350 -10.50197 -10.34914 -10.24265 -10.06867 -9.96626 -9.75780 -9.64859
-9.27145 -9.11754 -8.50596 -7.92226 -6.67187 -5.77593 -3.19086 -0.01480
0.34406 2.26428 2.69968 3.07634 3.38587 3.44636 3.45410 3.48780
3.56300 3.88079 4.04594 4.29661 4.38566 4.49514 4.52341 4.83216
4.94220 5.09980 5.14853 5.27402 5.32928 5.39559 5.40806 5.41080
5.46048 5.78576 5.87960 5.90029 5.98946 6.06329 6.08913 6.16078
6.22717 6.30952 6.52168 6.67008 6.91183 7.14163 7.22758 7.50831
7.61980 7.68501 7.80744 7.88156 8.43721 9.21355 9.84730 10.43124
11.31253
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.021516 B = 0.001981 C = 0.001893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.049160 B =14128.461924 C =14791.477616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.001 3.999
3 Si 0.903 3.097
4 H -0.285 1.285
5 H -0.290 1.290
6 H -0.283 1.283
7 C -0.254 4.254
8 H 0.065 0.935
9 N -0.596 5.596
10 C 0.148 3.852
11 C 0.046 3.954
12 N -0.529 5.529
13 C 0.044 3.956
14 C 0.121 3.879
15 N -0.720 5.720
16 C 0.555 3.445
17 O -0.513 6.513
18 C -0.141 4.141
19 C -0.094 4.094
20 C 0.083 3.917
21 F -0.131 7.131
22 C -0.100 4.100
23 C -0.134 4.134
24 C 0.152 3.848
25 F -0.107 7.107
26 C 0.030 3.970
27 C 0.178 3.822
28 H 0.255 0.745
29 H 0.026 0.974
30 H 0.056 0.944
31 H 0.062 0.938
32 H 0.029 0.971
33 H 0.074 0.926
34 H 0.033 0.967
35 H 0.075 0.925
36 H 0.082 0.918
37 H 0.397 0.603
38 H 0.149 0.851
39 H 0.152 0.848
40 H 0.155 0.845
41 H 0.026 0.974
42 H 0.064 0.936
43 H 0.028 0.972
44 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.872 -23.287 -17.304 29.025
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.197 4.197
3 Si 0.733 3.267
4 H -0.211 1.211
5 H -0.216 1.216
6 H -0.209 1.209
7 C -0.383 4.383
8 H 0.083 0.917
9 N -0.319 5.319
10 C 0.022 3.978
11 C -0.083 4.083
12 N -0.254 5.254
13 C -0.085 4.085
14 C -0.003 4.003
15 N -0.373 5.373
16 C 0.341 3.659
17 O -0.389 6.389
18 C -0.145 4.145
19 C -0.114 4.114
20 C 0.063 3.937
21 F -0.109 7.109
22 C -0.119 4.119
23 C -0.153 4.153
24 C 0.131 3.869
25 F -0.085 7.085
26 C -0.099 4.099
27 C 0.052 3.948
28 H 0.065 0.935
29 H 0.044 0.956
30 H 0.075 0.925
31 H 0.080 0.920
32 H 0.047 0.953
33 H 0.092 0.908
34 H 0.051 0.949
35 H 0.094 0.906
36 H 0.100 0.900
37 H 0.232 0.768
38 H 0.167 0.833
39 H 0.169 0.831
40 H 0.172 0.828
41 H 0.044 0.956
42 H 0.083 0.917
43 H 0.046 0.954
44 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -2.122 -22.794 -16.738 28.359
hybrid contribution 1.585 0.788 -0.708 1.907
sum -0.537 -22.006 -17.447 28.088
Atomic orbital electron populations
1.70014 1.05191 1.25649 1.53833 1.25034 0.95318 0.98373 1.01008
0.86361 0.78883 0.83401 0.78059 1.21140 1.21600 1.20892 1.19141
0.92549 0.84784 1.41864 0.91690 1.44122 1.34156 1.01252 1.52358
1.20969 0.97869 0.86493 0.92506 1.22631 0.89225 0.99543 0.96912
1.61874 1.34712 1.05767 1.23058 1.22200 0.94838 0.97083 0.94358
1.21469 0.98434 0.90733 0.89615 1.45834 1.11118 1.41430 1.38874
1.17800 0.84365 0.82406 0.81370 1.90901 1.28824 1.53066 1.66123
1.19955 0.93171 1.00948 1.00468 1.21193 0.97963 0.95085 0.97135
1.17464 0.82303 0.95648 0.98263 1.91559 1.45330 1.81185 1.92867
1.21208 0.90659 1.00280 0.99714 1.21053 0.99581 0.96382 0.98271
1.17708 0.81355 0.92842 0.94998 1.91643 1.43595 1.80955 1.92326
1.23018 0.98845 0.89183 0.98807 1.20873 0.89002 0.96573 0.88387
0.93507 0.95599 0.92541 0.91951 0.95318 0.90783 0.94907 0.90643
0.89997 0.76764 0.83295 0.83077 0.82764 0.95555 0.91742 0.95411
0.89280
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.39 11.15 55.49 0.62 -25.78 16
2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16
3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16
4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
7 C -0.25 -6.99 9.63 -15.06 -0.15 -7.14 16
8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16
9 N -0.60 -15.09 3.04 -172.01 -0.52 -15.61 16
10 C 0.15 3.12 6.69 -3.60 -0.02 3.09 16
11 C 0.05 0.80 5.62 -3.70 -0.02 0.77 16
12 N -0.53 -9.01 4.63 -234.32 -1.08 -10.10 16
13 C 0.04 0.56 5.08 -3.82 -0.02 0.54 16
14 C 0.12 1.54 5.61 -4.04 -0.02 1.52 16
15 N -0.72 -7.39 5.51 -61.29 -0.34 -7.72 16
16 C 0.56 6.83 7.77 -12.40 -0.10 6.74 16
17 O -0.51 -8.56 15.34 5.30 0.08 -8.48 16
18 C -0.14 -1.32 5.88 -104.92 -0.62 -1.94 16
19 C -0.09 -0.63 9.52 -39.11 -0.37 -1.00 16
20 C 0.08 0.52 7.29 -39.49 -0.29 0.23 16
21 F -0.13 -0.92 17.26 2.25 0.04 -0.88 16
22 C -0.10 -0.49 10.01 -39.45 -0.39 -0.88 16
23 C -0.13 -0.78 10.01 -39.57 -0.40 -1.18 16
24 C 0.15 1.41 7.28 -38.97 -0.28 1.13 16
25 F -0.11 -1.30 15.55 2.25 0.04 -1.26 16
26 C 0.03 0.59 5.46 -3.70 -0.02 0.57 16
27 C 0.18 4.31 5.42 -3.60 -0.02 4.29 16
28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16
29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
30 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16
31 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16
32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.07 0.81 7.97 -51.93 -0.41 0.39 16
34 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16
35 H 0.08 1.10 6.40 -51.93 -0.33 0.77 16
36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
37 H 0.40 2.76 6.50 -40.82 -0.27 2.49 16
38 H 0.15 0.66 6.40 -52.49 -0.34 0.32 16
39 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16
40 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16
41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
42 H 0.06 1.15 6.16 -51.93 -0.32 0.83 16
43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
44 H 0.09 2.39 6.12 -51.93 -0.32 2.08 16
LS Contribution 366.22 15.07 5.52 5.52
Total: -1.00 -33.33 366.22 -9.23 -42.56
By element:
Atomic # 1 Polarization: 4.09 SS G_CDS: -5.74 Total: -1.66 kcal
Atomic # 6 Polarization: 9.50 SS G_CDS: -2.81 Total: 6.69 kcal
Atomic # 7 Polarization: -57.89 SS G_CDS: -1.33 Total: -59.21 kcal
Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal
Atomic # 9 Polarization: -2.22 SS G_CDS: 0.07 Total: -2.14 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -33.33 -9.23 -42.56 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713806728.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.272 kcal
(2) G-P(sol) polarization free energy of solvation -33.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds