Wall clock time and date at job start Tue Mar 31 2020 23:03:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86798 * 119.99910 * 2 1
4 4 H 1.48502 * 109.46925 * 239.99796 * 3 2 1
5 5 H 1.48494 * 109.47126 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47446 * 120.00029 * 3 2 1
7 7 C 1.38813 * 120.00329 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00348 * 197.02151 * 7 2 1
9 9 N 1.36941 * 120.00051 * 17.01485 * 7 2 1
10 10 C 1.47079 * 120.88531 * 206.58768 * 9 7 2
11 11 C 1.53237 * 108.51770 * 231.16239 * 10 9 7
12 12 N 1.46897 * 109.34631 * 306.16622 * 11 10 9
13 13 C 1.46900 * 111.00220 * 187.25433 * 12 11 10
14 14 C 1.53002 * 109.46715 * 170.00178 * 13 12 11
15 15 N 1.46504 * 109.46559 * 180.02562 * 14 13 12
16 16 C 1.34776 * 119.99668 * 180.02562 * 15 14 13
17 17 O 1.21573 * 120.00467 * 0.02562 * 16 15 14
18 18 C 1.47700 * 119.99911 * 180.02562 * 16 15 14
19 19 C 1.39654 * 120.15375 * 0.02562 * 18 16 15
20 20 C 1.38075 * 119.84891 * 179.97438 * 19 18 16
21 21 F 1.35100 * 119.91497 * 179.97438 * 20 19 18
22 22 C 1.38653 * 120.16468 * 0.02562 * 20 19 18
23 23 C 1.38184 * 120.31770 * 0.02562 * 22 20 19
24 24 C 1.38310 * 120.14573 * 359.97438 * 23 22 20
25 25 F 1.35095 * 120.08501 * 180.27732 * 24 23 22
26 26 C 1.46898 * 111.26413 * 63.10823 * 12 11 10
27 27 C 1.47083 * 120.87629 * 26.56653 * 9 7 2
28 28 H 0.96994 * 120.00275 * 359.97438 * 1 2 3
29 29 H 1.08998 * 109.62330 * 111.45564 * 10 9 7
30 30 H 1.08999 * 109.78408 * 350.96716 * 10 9 7
31 31 H 1.09003 * 109.48813 * 186.20881 * 11 10 9
32 32 H 1.08997 * 109.49600 * 66.13500 * 11 10 9
33 33 H 1.09003 * 109.46986 * 50.00397 * 13 12 11
34 34 H 1.08997 * 109.47277 * 290.00321 * 13 12 11
35 35 H 1.09003 * 109.47214 * 60.00359 * 14 13 12
36 36 H 1.08997 * 109.47365 * 300.00089 * 14 13 12
37 37 H 0.96997 * 120.00595 * 0.02562 * 15 14 13
38 38 H 1.07998 * 120.07290 * 359.96446 * 19 18 16
39 39 H 1.08002 * 119.83892 * 180.02562 * 22 20 19
40 40 H 1.08003 * 119.92435 * 180.02562 * 23 22 20
41 41 H 1.08998 * 109.49470 * 56.85606 * 26 12 11
42 42 H 1.08995 * 109.49453 * 176.94015 * 26 12 11
43 43 H 1.08999 * 109.62941 * 248.54792 * 27 9 7
44 44 H 1.09002 * 109.63028 * 9.12952 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 3.1039 1.6963 -1.2125
5 1 1.2852 2.7464 -0.0006
6 1 3.1039 1.6965 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0548 -1.2225 0.2743
9 7 1.3706 -2.3623 -0.3460
10 6 1.8310 -3.6610 0.1686
11 6 2.0023 -4.6201 -1.0141
12 7 0.7548 -4.6658 -1.7883
13 6 0.8184 -5.7009 -2.8287
14 6 -0.5693 -5.8907 -3.4447
15 7 -0.5059 -6.9234 -4.4818
16 6 -1.6173 -7.2608 -5.1656
17 8 -2.6723 -6.7078 -4.9220
18 6 -1.5536 -8.3024 -6.2108
19 6 -0.3436 -8.9400 -6.4929
20 6 -0.2914 -9.9132 -7.4710
21 9 0.8785 -10.5306 -7.7454
22 6 -1.4364 -10.2577 -8.1730
23 6 -2.6371 -9.6304 -7.9002
24 6 -2.7042 -8.6537 -6.9231
25 9 -3.8798 -8.0452 -6.6536
26 6 0.4401 -3.3538 -2.3695
27 6 0.2047 -2.3427 -1.2423
28 1 -0.4850 0.8400 0.0004
29 1 1.0920 -4.0628 0.8619
30 1 2.7850 -3.5375 0.6812
31 1 2.2364 -5.6177 -0.6424
32 1 2.8137 -4.2697 -1.6520
33 1 1.1514 -6.6401 -2.3869
34 1 1.5211 -5.3945 -3.6036
35 1 -0.9023 -4.9515 -3.8865
36 1 -1.2720 -6.1970 -2.6698
37 1 0.3358 -7.3644 -4.6765
38 1 0.5492 -8.6724 -5.9474
39 1 -1.3896 -11.0200 -8.9367
40 1 -3.5251 -9.9039 -8.4506
41 1 1.2732 -3.0210 -2.9885
42 1 -0.4589 -3.4329 -2.9807
43 1 -0.6906 -2.6178 -0.6847
44 1 0.0842 -1.3450 -1.6647
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713806728.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:43
Heat of formation + Delta-G solvation = -81.007851 kcal
Electronic energy + Delta-G solvation = -28501.332338 eV
Core-core repulsion = 24089.822273 eV
Total energy + Delta-G solvation = -4411.510065 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-50.02123 -49.98898 -41.24886 -39.82717 -39.19769 -36.91273 -35.56029 -33.49096
-32.73361 -31.65906 -31.11882 -30.19156 -27.71790 -25.64050 -24.88369 -24.28154
-23.77173 -22.62446 -21.93269 -20.84208 -19.52989 -18.75181 -18.54861 -18.33735
-17.35651 -17.20348 -17.13705 -16.72267 -16.58467 -16.39084 -16.03451 -15.82350
-15.64411 -15.40577 -15.32344 -15.19211 -15.06073 -14.83923 -14.45599 -14.21758
-14.11587 -13.67205 -13.22720 -13.03257 -12.98754 -12.86950 -12.61755 -12.57517
-12.56702 -12.29139 -12.04534 -11.86576 -11.56873 -11.46549 -11.20986 -10.58959
-10.53415 -10.20608 -9.72714 -9.31417 -8.69498 -7.88104 -5.33093 -0.60094
-0.16479 1.45955 1.48491 1.55033 1.55520 1.81126 2.38619 2.50374
2.91930 2.99722 3.07515 3.27238 3.40338 3.51187 3.67330 3.82397
3.84845 3.98809 4.05119 4.28744 4.34061 4.37421 4.44222 4.54018
4.63304 4.67131 4.70699 4.77995 4.82159 4.84335 4.90222 4.92924
4.97867 5.03508 5.18805 5.23217 5.36900 5.57821 5.60332 5.66856
6.12400 6.20843 6.33848 6.36571 7.01478 7.12134 7.83397 8.37543
9.18710
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.021516 B = 0.001981 C = 0.001893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1301.049160 B =14128.461924 C =14791.477616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.055 4.055
3 Si 0.970 3.030
4 H -0.278 1.278
5 H -0.295 1.295
6 H -0.274 1.274
7 C -0.264 4.264
8 H 0.070 0.930
9 N -0.615 5.615
10 C 0.141 3.859
11 C 0.058 3.942
12 N -0.543 5.543
13 C 0.054 3.946
14 C 0.129 3.871
15 N -0.703 5.703
16 C 0.552 3.448
17 O -0.569 6.569
18 C -0.159 4.159
19 C -0.085 4.085
20 C 0.080 3.920
21 F -0.132 7.132
22 C -0.081 4.081
23 C -0.123 4.123
24 C 0.123 3.877
25 F -0.133 7.133
26 C 0.049 3.951
27 C 0.184 3.816
28 H 0.250 0.750
29 H 0.014 0.986
30 H 0.064 0.936
31 H 0.102 0.898
32 H 0.030 0.970
33 H 0.106 0.894
34 H 0.049 0.951
35 H 0.053 0.947
36 H 0.063 0.937
37 H 0.417 0.583
38 H 0.171 0.829
39 H 0.185 0.815
40 H 0.180 0.820
41 H 0.024 0.976
42 H 0.075 0.925
43 H -0.005 1.005
44 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.499 -26.072 -19.142 32.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.584 5.584
2 C -0.250 4.250
3 Si 0.798 3.202
4 H -0.204 1.204
5 H -0.222 1.222
6 H -0.199 1.199
7 C -0.394 4.394
8 H 0.088 0.912
9 N -0.339 5.339
10 C 0.015 3.985
11 C -0.071 4.071
12 N -0.268 5.268
13 C -0.074 4.074
14 C 0.004 3.996
15 N -0.356 5.356
16 C 0.340 3.660
17 O -0.448 6.448
18 C -0.163 4.163
19 C -0.105 4.105
20 C 0.061 3.939
21 F -0.110 7.110
22 C -0.100 4.100
23 C -0.142 4.142
24 C 0.103 3.897
25 F -0.111 7.111
26 C -0.080 4.080
27 C 0.058 3.942
28 H 0.059 0.941
29 H 0.032 0.968
30 H 0.082 0.918
31 H 0.120 0.880
32 H 0.048 0.952
33 H 0.124 0.876
34 H 0.068 0.932
35 H 0.072 0.928
36 H 0.082 0.918
37 H 0.255 0.745
38 H 0.189 0.811
39 H 0.203 0.797
40 H 0.198 0.802
41 H 0.042 0.958
42 H 0.093 0.907
43 H 0.013 0.987
44 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 0.318 -25.640 -18.586 31.670
hybrid contribution 0.871 1.518 -0.146 1.756
sum 1.188 -24.123 -18.732 30.565
Atomic orbital electron populations
1.70192 1.06756 1.25939 1.55471 1.25847 0.96080 1.01683 1.01399
0.85298 0.77487 0.79023 0.78387 1.20377 1.22173 1.19919 1.19520
0.92961 0.85924 1.40964 0.91189 1.44418 1.34123 1.02349 1.53017
1.21169 0.97568 0.85471 0.94256 1.22474 0.89026 1.00326 0.95235
1.61742 1.35124 1.05212 1.24759 1.22200 0.94713 0.96762 0.93757
1.21200 0.98349 0.90425 0.89579 1.45597 1.11687 1.40576 1.37751
1.18301 0.83796 0.82387 0.81559 1.90870 1.30846 1.55207 1.67920
1.19731 0.94517 1.01402 1.00667 1.21312 0.97508 0.94501 0.97140
1.17576 0.82650 0.95461 0.98241 1.91566 1.45501 1.81140 1.92838
1.21589 0.89443 0.99731 0.99217 1.21311 1.01027 0.94833 0.96981
1.18199 0.80632 0.94269 0.96649 1.91575 1.45026 1.81753 1.92776
1.22614 0.99328 0.89469 0.96567 1.20604 0.87869 0.96358 0.89335
0.94113 0.96771 0.91801 0.87973 0.95211 0.87627 0.93245 0.92846
0.91817 0.74470 0.81131 0.79726 0.80228 0.95767 0.90702 0.98671
0.92655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.04 11.15 21.65 0.24 -56.80 16
2 C -0.05 -3.13 4.94 84.86 0.42 -2.71 16
3 Si 0.97 45.46 29.59 68.60 2.03 47.49 16
4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16
6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16
7 C -0.26 -14.72 9.63 84.03 0.81 -13.91 16
8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16
9 N -0.61 -31.72 3.04 -698.11 -2.12 -33.84 16
10 C 0.14 5.84 6.69 86.35 0.58 6.42 16
11 C 0.06 1.85 5.62 86.38 0.49 2.34 16
12 N -0.54 -17.64 4.63 -895.26 -4.15 -21.78 16
13 C 0.05 1.20 5.08 86.30 0.44 1.64 16
14 C 0.13 3.19 5.61 86.38 0.48 3.68 16
15 N -0.70 -13.47 5.51 -466.10 -2.57 -16.04 16
16 C 0.55 13.65 7.77 86.74 0.67 14.32 16
17 O -0.57 -19.98 15.34 -3.94 -0.06 -20.04 16
18 C -0.16 -2.84 5.88 -20.06 -0.12 -2.96 16
19 C -0.09 -0.92 9.52 22.57 0.21 -0.71 16
20 C 0.08 0.74 7.29 22.33 0.16 0.91 16
21 F -0.13 -1.38 17.26 44.97 0.78 -0.60 16
22 C -0.08 -0.50 10.01 22.36 0.22 -0.27 16
23 C -0.12 -1.13 10.01 22.27 0.22 -0.91 16
24 C 0.12 2.23 7.28 22.67 0.17 2.39 16
25 F -0.13 -3.38 15.55 44.97 0.70 -2.68 16
26 C 0.05 1.92 5.46 86.39 0.47 2.39 16
27 C 0.18 9.32 5.42 86.35 0.47 9.79 16
28 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16
30 H 0.06 2.50 7.96 -2.39 -0.02 2.48 16
31 H 0.10 2.48 7.99 -2.39 -0.02 2.47 16
32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16
33 H 0.11 1.79 7.97 -2.39 -0.02 1.77 16
34 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16
35 H 0.05 1.58 6.40 -2.39 -0.02 1.56 16
36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
37 H 0.42 4.56 6.50 -92.71 -0.60 3.96 16
38 H 0.17 0.92 6.40 -2.91 -0.02 0.90 16
39 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16
40 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16
41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16
42 H 0.07 2.73 6.16 -2.39 -0.01 2.71 16
43 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16
44 H 0.06 3.14 6.12 -2.39 -0.01 3.12 16
Total: -1.00 -77.40 366.22 0.99 -76.41
By element:
Atomic # 1 Polarization: 5.03 SS G_CDS: 0.44 Total: 5.47 kcal
Atomic # 6 Polarization: 16.72 SS G_CDS: 5.70 Total: 22.42 kcal
Atomic # 7 Polarization: -119.87 SS G_CDS: -8.59 Total: -128.46 kcal
Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.04 kcal
Atomic # 9 Polarization: -4.76 SS G_CDS: 1.48 Total: -3.29 kcal
Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal
Total: -77.40 0.99 -76.41 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713806728.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.602 kcal
(2) G-P(sol) polarization free energy of solvation -77.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.000 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds