Wall clock time and date at job start Tue Mar 31 2020 22:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00422 * 2 1 4 4 O 1.21280 * 120.00179 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99720 * 359.97438 * 3 2 1 6 6 S 1.80995 * 109.47163 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99933 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00353 * 0.02562 * 7 6 5 9 9 C 1.38801 * 119.99705 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00132 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99774 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00133 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00126 * 11 9 7 15 15 C 1.46500 * 119.99827 * 179.97438 * 2 1 3 16 16 H 1.09004 * 110.27801 * 182.08935 * 15 2 1 17 17 C 1.54597 * 110.31344 * 304.29102 * 15 2 1 18 18 C 1.54929 * 102.92495 * 96.95626 * 17 15 2 19 19 N 1.48528 * 103.22965 * 37.41639 * 18 17 15 20 20 C 1.46899 * 111.00545 * 200.28093 * 19 18 17 21 21 C 1.50703 * 109.46867 * 287.39862 * 20 19 18 22 22 N 1.30829 * 125.96681 * 90.02051 * 21 20 19 23 23 C 1.33233 * 109.83143 * 180.02562 * 22 21 20 24 24 N 1.30711 * 108.95039 * 359.97438 * 23 22 21 25 25 N 1.34429 * 125.95982 * 269.71134 * 21 20 19 26 26 C 1.46504 * 126.81915 * 0.02562 * 25 21 20 27 27 C 1.47906 * 105.82140 * 320.79243 * 19 18 17 28 28 H 1.09007 * 109.47160 * 90.00427 * 1 2 3 29 29 H 1.09004 * 109.47849 * 210.00032 * 1 2 3 30 30 H 1.08998 * 109.47141 * 330.00687 * 1 2 3 31 31 H 1.08995 * 109.47138 * 59.99991 * 5 3 2 32 32 H 1.08998 * 109.47102 * 300.00238 * 5 3 2 33 33 H 0.97001 * 120.00200 * 359.97438 * 10 9 7 34 34 H 1.08997 * 110.72717 * 215.31900 * 17 15 2 35 35 H 1.09003 * 110.71831 * 338.59847 * 17 15 2 36 36 H 1.09001 * 110.66781 * 278.98104 * 18 17 15 37 37 H 1.09000 * 110.80861 * 155.92049 * 18 17 15 38 38 H 1.09004 * 109.46974 * 47.39319 * 20 19 18 39 39 H 1.08992 * 109.47615 * 167.39524 * 20 19 18 40 40 H 1.08005 * 125.52851 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47223 * 89.99802 * 26 25 21 42 42 H 1.09002 * 109.46925 * 209.99717 * 26 25 21 43 43 H 1.08998 * 109.47397 * 329.99345 * 26 25 21 44 44 H 1.08994 * 109.92232 * 265.97816 * 27 19 18 45 45 H 1.08997 * 110.08437 * 144.76534 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4416 5.2081 -0.0026 8 1 0.3763 5.0305 -0.0024 9 6 1.9284 6.5080 -0.0028 10 7 3.2267 6.7245 -0.0026 11 14 0.7409 7.9500 -0.0050 12 1 1.5071 9.2221 -0.0043 13 1 -0.1155 7.8879 1.2066 14 1 -0.1128 7.8864 -1.2184 15 6 2.1974 -1.2688 0.0006 16 1 3.2712 -1.0850 0.0378 17 6 1.7583 -2.1414 1.1988 18 6 0.7042 -3.0872 0.5708 19 7 1.2609 -3.3697 -0.7769 20 6 0.2129 -3.8433 -1.6909 21 6 -0.1793 -5.2502 -1.3194 22 7 -1.1211 -5.5882 -0.4766 23 6 -1.1944 -6.9156 -0.3891 24 7 -0.2966 -7.4433 -1.1791 25 7 0.3737 -6.3770 -1.8006 26 6 1.4623 -6.4736 -2.7764 27 6 1.8393 -2.0932 -1.2499 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3635 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 0.7585 2.5302 0.8891 32 1 0.7591 2.5298 -0.8908 33 1 3.8433 5.9757 -0.0018 34 1 2.6014 -2.7099 1.5914 35 1 1.3092 -1.5271 1.9792 36 1 -0.2616 -2.5881 0.4912 37 1 0.6143 -4.0061 1.1502 38 1 -0.6574 -3.1914 -1.6148 39 1 0.5892 -3.8291 -2.7138 40 1 -1.8839 -7.4664 0.2335 41 1 2.4186 -6.4873 -2.2536 42 1 1.3513 -7.3907 -3.3549 43 1 1.4268 -5.6147 -3.4465 44 1 1.1080 -1.5548 -1.8527 45 1 2.7368 -2.2842 -1.8382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713990660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:06 Heat of formation + Delta-G solvation = 74.398499 kcal Electronic energy + Delta-G solvation = -26820.779191 eV Core-core repulsion = 23002.141188 eV Total energy + Delta-G solvation = -3818.638002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.47719 -40.40750 -38.52041 -35.36531 -34.43842 -32.96491 -32.55620 -30.95789 -29.77504 -28.62125 -27.83705 -26.86521 -25.85746 -24.84313 -22.42435 -21.86459 -21.42369 -20.64071 -19.16343 -18.28072 -17.50190 -17.10892 -16.86584 -16.27978 -15.84421 -15.56129 -15.21349 -15.15545 -14.62450 -14.35866 -14.09558 -13.85839 -13.71389 -13.56026 -13.38047 -13.13395 -12.93005 -12.58455 -12.43750 -12.38478 -12.30286 -12.08211 -11.93738 -11.88671 -11.71928 -11.48664 -11.13134 -10.94118 -10.38711 -10.19515 -10.10212 -9.98705 -9.59743 -9.51447 -9.04742 -9.03576 -8.64478 -8.25301 -6.70659 -6.64674 -4.03005 1.18570 1.91887 2.52040 2.73264 2.86515 3.28067 3.35832 3.37387 3.48768 3.55948 3.80800 4.07047 4.17284 4.21881 4.25570 4.49926 4.59225 4.69135 4.77801 4.82484 4.83696 4.92456 5.00278 5.06536 5.07006 5.13548 5.19632 5.26214 5.28717 5.42234 5.52274 5.61402 5.67810 5.72928 5.82491 5.87231 5.88995 5.96561 6.06802 6.16847 6.34790 6.41428 6.59573 7.35758 7.72991 7.88754 8.37919 8.47371 9.24301 10.79153 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.001975 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.924690 B =14177.040635 C =14476.350231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.617 5.617 3 C 0.534 3.466 4 O -0.515 6.515 5 C -0.127 4.127 6 S -0.117 6.117 7 C -0.607 4.607 8 H 0.065 0.935 9 C 0.035 3.965 10 N -0.883 5.883 11 Si 1.084 2.916 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.133 3.867 16 H 0.114 0.886 17 C -0.134 4.134 18 C 0.037 3.963 19 N -0.512 5.512 20 C 0.121 3.879 21 C 0.291 3.709 22 N -0.540 5.540 23 C 0.199 3.801 24 N -0.323 5.323 25 N -0.369 5.369 26 C 0.098 3.902 27 C 0.028 3.972 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.278 0.722 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.217 0.783 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.468 -26.689 -3.822 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.353 5.353 3 C 0.322 3.678 4 O -0.389 6.389 5 C -0.278 4.278 6 S 0.109 5.891 7 C -0.755 4.755 8 H 0.084 0.916 9 C -0.175 4.175 10 N -0.517 5.517 11 Si 0.910 3.090 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.028 3.972 16 H 0.132 0.868 17 C -0.172 4.172 18 C -0.090 4.090 19 N -0.237 5.237 20 C -0.009 4.009 21 C 0.013 3.987 22 N -0.269 5.269 23 C -0.104 4.104 24 N -0.151 5.151 25 N -0.159 5.159 26 C -0.045 4.045 27 C -0.100 4.100 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.233 0.767 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.352 -26.005 -3.799 27.037 hybrid contribution -2.214 -1.105 -0.197 2.483 sum -8.566 -27.110 -3.996 28.711 Atomic orbital electron populations 1.21902 0.79894 1.03632 1.01775 1.47920 1.06650 1.05216 1.75504 1.20352 0.87945 0.84578 0.74933 1.90693 1.13706 1.86719 1.47778 1.23343 1.03551 0.95892 1.05040 1.84825 1.10854 0.96184 1.97214 1.23685 0.94725 0.93397 1.63728 0.91639 1.26056 0.99058 0.99414 0.93008 1.70800 1.02018 1.35649 1.43246 0.83334 0.74088 0.74901 0.76715 1.20263 1.21125 1.21132 1.21798 0.99038 0.82794 0.93542 0.86802 1.22898 0.99490 0.97297 0.97557 1.23401 0.96536 0.99602 0.89456 1.64769 1.28253 1.28183 1.02528 1.20670 0.95629 0.87104 0.97519 1.23994 0.90884 0.91204 0.92570 1.70471 1.21255 1.14040 1.21102 1.25941 0.97243 0.89413 0.97811 1.78060 1.11889 1.10658 1.14524 1.50190 1.28389 1.03947 1.33421 1.21967 0.87471 1.04599 0.90434 1.23275 1.00671 0.88453 0.97634 0.92844 0.90842 0.90406 0.88961 0.89022 0.90990 0.89654 0.89957 0.92481 0.89806 0.90395 0.88445 0.76675 0.89688 0.89094 0.89029 0.92291 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 9.22 59.84 0.55 1.24 16 2 N -0.62 -7.92 2.72 -172.37 -0.47 -8.39 16 3 C 0.53 9.60 7.69 -10.99 -0.08 9.51 16 4 O -0.51 -11.19 15.22 5.56 0.08 -11.10 16 5 C -0.13 -2.51 4.71 36.01 0.17 -2.34 16 6 S -0.12 -3.11 19.60 -107.50 -2.11 -5.21 16 7 C -0.61 -17.28 9.50 30.94 0.29 -16.99 16 8 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 9 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 10 N -0.88 -27.26 13.67 55.49 0.76 -26.50 16 11 Si 1.08 24.66 29.92 -169.99 -5.09 19.57 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 15 C 0.13 1.47 3.44 -66.57 -0.23 1.24 16 16 H 0.11 1.51 6.97 -51.93 -0.36 1.15 16 17 C -0.13 -1.24 6.14 -24.87 -0.15 -1.39 16 18 C 0.04 0.31 5.75 -1.90 -0.01 0.30 16 19 N -0.51 -4.08 5.23 -231.89 -1.21 -5.29 16 20 C 0.12 0.84 5.04 -4.97 -0.03 0.82 16 21 C 0.29 2.61 7.09 -155.70 -1.10 1.51 16 22 N -0.54 -5.57 11.19 -11.97 -0.13 -5.71 16 23 C 0.20 1.85 13.03 -91.82 -1.20 0.65 16 24 N -0.32 -3.33 12.70 29.29 0.37 -2.96 16 25 N -0.37 -3.22 4.04 -65.10 -0.26 -3.48 16 26 C 0.10 0.47 11.33 59.85 0.68 1.14 16 27 C 0.03 0.24 6.18 -2.75 -0.02 0.23 16 28 H 0.05 0.46 7.92 -51.93 -0.41 0.05 16 29 H 0.07 0.58 4.76 -51.93 -0.25 0.34 16 30 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 31 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 32 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 33 H 0.28 8.75 7.12 -40.82 -0.29 8.46 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 36 H 0.06 0.47 5.66 -51.93 -0.29 0.17 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.53 7.83 -51.93 -0.41 0.12 16 39 H 0.10 0.47 7.06 -51.93 -0.37 0.11 16 40 H 0.22 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.24 7.10 -51.93 -0.37 -0.12 16 44 H 0.06 0.50 6.88 -51.93 -0.36 0.14 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -36.98 377.91 -9.98 -46.96 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.39 Total: -0.42 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.22 Total: -3.16 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.95 Total: -52.33 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.57 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.98 -9.98 -46.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713990660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.354 kcal (2) G-P(sol) polarization free energy of solvation -36.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds