Wall clock time and date at job start Tue Mar 31 2020 23:19:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86801 * 119.99880 * 2 1
4 4 H 1.48497 * 109.47196 * 270.00254 * 3 2 1
5 5 H 1.48503 * 109.46878 * 30.00623 * 3 2 1
6 6 H 1.48498 * 109.46627 * 150.00261 * 3 2 1
7 7 C 1.38817 * 120.00023 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99745 * 196.91829 * 7 2 1
9 9 N 1.36933 * 120.00030 * 16.91112 * 7 2 1
10 10 C 1.47151 * 120.98311 * 206.24300 * 9 7 2
11 11 C 1.53301 * 108.38574 * 230.51503 * 10 9 7
12 12 O 1.42965 * 109.21893 * 307.69371 * 11 10 9
13 13 C 1.42967 * 114.16424 * 62.58316 * 12 11 10
14 14 H 1.08997 * 109.51830 * 57.39072 * 13 12 11
15 15 C 1.53006 * 109.51075 * 177.49371 * 13 12 11
16 16 N 1.46494 * 109.46897 * 299.99828 * 15 13 12
17 17 C 1.34779 * 120.00133 * 180.02562 * 16 15 13
18 18 O 1.21281 * 119.99735 * 359.97438 * 17 16 15
19 19 C 1.50698 * 120.00493 * 180.02562 * 17 16 15
20 20 C 1.52993 * 109.47417 * 179.97438 * 19 17 16
21 21 N 1.46506 * 109.47341 * 179.97438 * 20 19 17
22 22 C 1.33875 * 122.76039 * 89.99585 * 21 20 19
23 23 O 1.21228 * 125.39772 * 0.02682 * 22 21 20
24 24 C 1.51313 * 109.20246 * 180.02562 * 22 21 20
25 25 C 1.54231 * 103.69681 * 359.92221 * 24 22 21
26 26 C 1.33877 * 122.75882 * 269.99754 * 21 20 19
27 27 O 1.21225 * 125.40138 * 359.97438 * 26 21 20
28 28 C 1.47153 * 120.98311 * 26.21653 * 9 7 2
29 29 H 0.97002 * 120.00260 * 359.97438 * 1 2 3
30 30 H 1.08994 * 109.68349 * 110.78850 * 10 9 7
31 31 H 1.09001 * 109.70958 * 350.25302 * 10 9 7
32 32 H 1.08998 * 109.51174 * 187.77094 * 11 10 9
33 33 H 1.09002 * 109.50863 * 67.61523 * 11 10 9
34 34 H 1.08996 * 109.46879 * 179.97438 * 15 13 12
35 35 H 1.09003 * 109.46736 * 59.99499 * 15 13 12
36 36 H 0.97005 * 120.00138 * 0.02562 * 16 15 13
37 37 H 1.08999 * 109.47279 * 59.98994 * 19 17 16
38 38 H 1.09006 * 109.46949 * 299.99529 * 19 17 16
39 39 H 1.08999 * 109.47585 * 59.99343 * 20 19 17
40 40 H 1.08999 * 109.47166 * 299.99690 * 20 19 17
41 41 H 1.08999 * 110.60871 * 118.52216 * 24 22 21
42 42 H 1.09003 * 110.60381 * 241.32823 * 24 22 21
43 43 H 1.09001 * 110.60476 * 118.59646 * 25 24 22
44 44 H 1.09001 * 110.60499 * 241.56045 * 25 24 22
45 45 H 1.09001 * 109.68482 * 9.76376 * 28 9 7
46 46 H 1.08997 * 109.68680 * 249.20962 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0465 -1.4000
5 1 1.4476 2.6526 0.7002
6 1 3.5477 1.4401 0.7000
7 6 2.0103 -1.2022 -0.0005
8 1 3.0552 -1.2225 0.2716
9 7 1.3700 -2.3623 -0.3460
10 6 1.8341 -3.6635 0.1609
11 6 1.9812 -4.6207 -1.0275
12 8 0.7647 -4.6291 -1.7785
13 6 0.4241 -3.3660 -2.3550
14 1 1.2370 -3.0280 -2.9977
15 6 -0.8551 -3.5100 -3.1820
16 7 -0.6392 -4.4908 -4.2486
17 6 -1.6355 -4.7819 -5.1083
18 8 -2.7110 -4.2322 -4.9985
19 6 -1.4137 -5.7912 -6.2051
20 6 -2.6927 -5.9351 -7.0321
21 7 -2.4768 -6.9159 -8.0988
22 6 -2.7203 -8.2229 -7.9414
23 8 -3.1373 -8.7425 -6.9285
24 6 -2.3926 -8.9487 -9.2280
25 6 -1.9138 -7.8249 -10.1695
26 6 -2.0198 -6.5789 -9.3112
27 8 -1.7366 -5.4553 -9.6675
28 6 0.1973 -2.3445 -1.2347
29 1 -0.4850 0.8400 0.0004
30 1 1.1060 -4.0634 0.8665
31 1 2.7974 -3.5426 0.6564
32 1 2.1901 -5.6259 -0.6615
33 1 2.8002 -4.2868 -1.6646
34 1 -1.1144 -2.5466 -3.6209
35 1 -1.6679 -3.8463 -2.5383
36 1 0.2209 -4.9307 -4.3361
37 1 -1.1552 -6.7545 -5.7656
38 1 -0.6004 -5.4555 -6.8486
39 1 -2.9516 -4.9719 -7.4716
40 1 -3.5057 -6.2710 -6.3884
41 1 -1.5986 -9.6776 -9.0657
42 1 -3.2811 -9.4346 -9.6313
43 1 -0.8815 -7.9947 -10.4756
44 1 -2.5657 -7.7499 -11.0399
45 1 0.0767 -1.3498 -1.6637
46 1 -0.6957 -2.6118 -0.6696
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714472701.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:19:33
Heat of formation + Delta-G solvation = -148.477613 kcal
Electronic energy + Delta-G solvation = -29270.047154 eV
Core-core repulsion = 24966.698896 eV
Total energy + Delta-G solvation = -4303.348258 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.167 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.86993 -40.96520 -40.00598 -39.64730 -37.01182 -36.51482 -35.91412 -35.12673
-33.29148 -32.73800 -31.44108 -29.11596 -27.49267 -27.06322 -25.47983 -24.97784
-23.28061 -23.24763 -21.83216 -21.19279 -20.43413 -18.97309 -18.76649 -17.95884
-17.66360 -17.62292 -17.46328 -17.11664 -16.85373 -16.52848 -16.11705 -15.77522
-15.54072 -15.28846 -15.24447 -15.07377 -14.93961 -14.76422 -14.67015 -14.52420
-14.33251 -13.65963 -13.62522 -13.41124 -13.19451 -13.02038 -12.70349 -12.55428
-12.43181 -12.20210 -12.10980 -12.05999 -11.90549 -11.68745 -11.36436 -11.20010
-11.07379 -10.91713 -10.78260 -10.58152 -10.20597 -8.78785 -7.93769 -5.41613
0.50400 1.39799 1.45032 1.46276 1.50199 1.55387 1.69340 2.14718
2.46056 2.75495 3.20885 3.23089 3.29952 3.46782 3.55269 3.67204
3.78172 3.81987 4.01811 4.03608 4.23186 4.23301 4.29495 4.35981
4.43070 4.48031 4.51045 4.57892 4.65524 4.76560 4.79985 4.82779
4.94480 4.95166 4.98662 5.04452 5.20110 5.29831 5.49539 5.57601
5.82598 6.23226 6.29564 6.33414 6.43843 6.73221 7.02568 7.12136
7.71614 8.25274 9.12107
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.020423 B = 0.002054 C = 0.001968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1370.704294 B =13629.958149 C =14221.826767
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.052 4.052
3 Si 0.972 3.028
4 H -0.283 1.283
5 H -0.297 1.297
6 H -0.265 1.265
7 C -0.266 4.266
8 H 0.075 0.925
9 N -0.614 5.614
10 C 0.101 3.899
11 C 0.057 3.943
12 O -0.390 6.390
13 C 0.077 3.923
14 H 0.066 0.934
15 C 0.142 3.858
16 N -0.707 5.707
17 C 0.515 3.485
18 O -0.585 6.585
19 C -0.139 4.139
20 C 0.114 3.886
21 N -0.579 5.579
22 C 0.518 3.482
23 O -0.523 6.523
24 C -0.140 4.140
25 C -0.138 4.138
26 C 0.517 3.483
27 O -0.523 6.523
28 C 0.158 3.842
29 H 0.251 0.749
30 H 0.014 0.986
31 H 0.073 0.927
32 H 0.122 0.878
33 H 0.055 0.945
34 H 0.075 0.925
35 H 0.057 0.943
36 H 0.417 0.583
37 H 0.116 0.884
38 H 0.117 0.883
39 H 0.087 0.913
40 H 0.086 0.914
41 H 0.149 0.851
42 H 0.146 0.854
43 H 0.149 0.851
44 H 0.146 0.854
45 H 0.067 0.933
46 H -0.001 1.001
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.499 -21.579 -22.875 31.451
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.248 4.248
3 Si 0.799 3.201
4 H -0.210 1.210
5 H -0.224 1.224
6 H -0.190 1.190
7 C -0.395 4.395
8 H 0.093 0.907
9 N -0.339 5.339
10 C -0.024 4.024
11 C -0.020 4.020
12 O -0.309 6.309
13 C 0.017 3.983
14 H 0.084 0.916
15 C 0.017 3.983
16 N -0.358 5.358
17 C 0.302 3.698
18 O -0.465 6.465
19 C -0.179 4.179
20 C -0.009 4.009
21 N -0.321 5.321
22 C 0.310 3.690
23 O -0.397 6.397
24 C -0.179 4.179
25 C -0.177 4.177
26 C 0.309 3.691
27 O -0.397 6.397
28 C 0.032 3.968
29 H 0.061 0.939
30 H 0.032 0.968
31 H 0.092 0.908
32 H 0.140 0.860
33 H 0.074 0.926
34 H 0.093 0.907
35 H 0.076 0.924
36 H 0.253 0.747
37 H 0.134 0.866
38 H 0.135 0.865
39 H 0.105 0.895
40 H 0.105 0.895
41 H 0.166 0.834
42 H 0.163 0.837
43 H 0.167 0.833
44 H 0.163 0.837
45 H 0.085 0.915
46 H 0.017 0.983
Dipole moment (debyes) X Y Z Total
from point charges -0.519 -20.883 -22.409 30.636
hybrid contribution 0.395 1.689 1.009 2.007
sum -0.124 -19.194 -21.400 28.747
Atomic orbital electron populations
1.70185 1.06795 1.26111 1.55137 1.25875 0.96096 1.01784 1.01025
0.85203 0.78083 0.79118 0.77664 1.21004 1.22359 1.18985 1.19568
0.93084 0.85510 1.41358 0.90694 1.44353 1.33657 1.02458 1.53396
1.21838 0.98578 0.86462 0.95554 1.23094 0.85792 1.00722 0.92431
1.87792 1.43065 1.30594 1.69460 1.22748 0.95844 0.85472 0.94188
0.91621 1.21108 0.96343 0.92780 0.88041 1.45780 1.16404 1.43369
1.30281 1.20855 0.83424 0.82761 0.82773 1.90714 1.26800 1.54562
1.74465 1.21821 1.00365 0.99789 0.95975 1.21271 0.97688 0.93046
0.88877 1.47036 1.59402 1.10793 1.14906 1.21861 0.74157 0.81566
0.91411 1.90801 1.43245 1.71225 1.34451 1.22609 1.07483 0.98807
0.89003 1.22675 1.08532 0.87747 0.98743 1.21965 0.73155 0.91983
0.81978 1.90798 1.47517 1.25668 1.75753 1.21093 0.88290 0.97556
0.89902 0.93949 0.96752 0.90831 0.86038 0.92627 0.90676 0.92414
0.74663 0.86603 0.86470 0.89477 0.89541 0.83353 0.83664 0.83347
0.83656 0.91483 0.98295
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.82 11.14 21.65 0.24 -55.58 16
2 C -0.05 -2.91 4.95 84.86 0.42 -2.49 16
3 Si 0.97 44.57 29.59 68.60 2.03 46.60 16
4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16
6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
7 C -0.27 -14.42 9.65 84.04 0.81 -13.61 16
8 H 0.08 3.90 7.88 -2.91 -0.02 3.87 16
9 N -0.61 -30.82 3.05 -697.53 -2.13 -32.95 16
10 C 0.10 4.08 6.73 86.36 0.58 4.66 16
11 C 0.06 1.81 6.99 72.08 0.50 2.31 16
12 O -0.39 -13.68 10.13 -148.98 -1.51 -15.18 16
13 C 0.08 2.89 2.87 30.70 0.09 2.98 16
14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
15 C 0.14 4.95 5.37 86.38 0.46 5.41 16
16 N -0.71 -19.55 5.45 -463.06 -2.52 -22.07 16
17 C 0.51 14.72 7.83 87.66 0.69 15.40 16
18 O -0.58 -21.80 15.98 -3.03 -0.05 -21.85 16
19 C -0.14 -2.76 6.02 29.85 0.18 -2.58 16
20 C 0.11 2.46 4.84 86.38 0.42 2.88 16
21 N -0.58 -9.06 2.55 -756.20 -1.93 -11.00 16
22 C 0.52 7.01 8.08 87.99 0.71 7.72 16
23 O -0.52 -11.80 17.48 -2.87 -0.05 -11.85 16
24 C -0.14 -0.12 7.02 30.46 0.21 0.10 16
25 C -0.14 -0.11 7.05 30.58 0.22 0.11 16
26 C 0.52 6.97 8.09 88.11 0.71 7.68 16
27 O -0.52 -11.74 17.48 -2.86 -0.05 -11.79 16
28 C 0.16 7.73 4.73 86.35 0.41 8.14 16
29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.07 2.76 7.96 -2.39 -0.02 2.75 16
32 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16
33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
34 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16
35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
36 H 0.42 9.21 8.35 -92.70 -0.77 8.43 16
37 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16
38 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16
39 H 0.09 2.15 7.79 -2.39 -0.02 2.13 16
40 H 0.09 2.15 7.79 -2.39 -0.02 2.13 16
41 H 0.15 -0.53 8.14 -2.39 -0.02 -0.55 16
42 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16
43 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16
44 H 0.15 -0.46 8.14 -2.39 -0.02 -0.48 16
45 H 0.07 3.65 6.14 -2.39 -0.01 3.64 16
46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16
Total: -1.00 -82.71 384.44 0.67 -82.04
By element:
Atomic # 1 Polarization: 14.70 SS G_CDS: 0.23 Total: 14.93 kcal
Atomic # 6 Polarization: 32.29 SS G_CDS: 6.41 Total: 38.71 kcal
Atomic # 7 Polarization: -115.26 SS G_CDS: -6.34 Total: -121.60 kcal
Atomic # 8 Polarization: -59.01 SS G_CDS: -1.66 Total: -60.67 kcal
Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal
Total: -82.71 0.67 -82.04 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714472701.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.439 kcal
(2) G-P(sol) polarization free energy of solvation -82.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds