Wall clock time and date at job start Tue Mar 31 2020 22:34:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 N 1.40448 * 126.82309 * 2 1
4 4 C 1.30714 * 106.78998 * 180.26074 * 3 2 1
5 5 N 1.33250 * 108.94411 * 359.75064 * 4 3 2
6 6 C 1.30822 * 109.83202 * 0.02562 * 5 4 3
7 7 C 1.50697 * 125.96219 * 179.97438 * 6 5 4
8 8 N 1.46901 * 109.47003 * 90.02330 * 7 6 5
9 9 C 1.48554 * 110.99852 * 290.12331 * 8 7 6
10 10 C 1.54383 * 104.59576 * 200.96010 * 9 8 7
11 11 C 1.54259 * 105.05950 * 23.85952 * 10 9 8
12 12 H 1.09009 * 110.32168 * 241.00197 * 11 10 9
13 13 C 1.52997 * 110.32700 * 118.89546 * 11 10 9
14 14 N 1.46497 * 109.46983 * 66.45289 * 13 11 10
15 15 C 1.34780 * 119.99566 * 180.02562 * 14 13 11
16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13
17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13
18 18 S 1.81002 * 109.47156 * 179.97438 * 17 15 14
19 19 C 1.76193 * 100.00049 * 180.02562 * 18 17 15
20 20 H 1.08005 * 120.00026 * 359.97438 * 19 18 17
21 21 C 1.38806 * 120.00056 * 180.02562 * 19 18 17
22 22 N 1.31623 * 119.99640 * 359.97438 * 21 19 18
23 23 Si 1.86796 * 120.00053 * 179.97438 * 21 19 18
24 24 H 1.48508 * 109.47315 * 359.97438 * 23 21 19
25 25 H 1.48494 * 109.47332 * 119.99854 * 23 21 19
26 26 H 1.48499 * 109.47328 * 240.00154 * 23 21 19
27 27 C 1.48564 * 110.99610 * 174.70879 * 8 7 6
28 28 H 1.08999 * 109.47127 * 270.17487 * 1 2 3
29 29 H 1.09005 * 109.46958 * 30.16430 * 1 2 3
30 30 H 1.08998 * 109.47629 * 150.16584 * 1 2 3
31 31 H 1.07998 * 125.52608 * 179.72051 * 4 3 2
32 32 H 1.08991 * 109.47243 * 330.01948 * 7 6 5
33 33 H 1.09001 * 109.47124 * 210.02086 * 7 6 5
34 34 H 1.09003 * 110.41081 * 82.18228 * 9 8 7
35 35 H 1.09001 * 110.51574 * 319.79365 * 9 8 7
36 36 H 1.09002 * 110.32453 * 264.95749 * 10 9 8
37 37 H 1.09008 * 110.40963 * 142.79307 * 10 9 8
38 38 H 1.09001 * 109.46832 * 306.45106 * 13 11 10
39 39 H 1.09002 * 109.47153 * 186.45297 * 13 11 10
40 40 H 0.96995 * 120.00423 * 359.97438 * 14 13 11
41 41 H 1.09002 * 109.47060 * 299.99722 * 17 15 14
42 42 H 1.09001 * 109.47380 * 59.99809 * 17 15 14
43 43 H 0.97010 * 119.99946 * 180.02562 * 22 21 19
44 44 H 1.08991 * 110.41459 * 40.26239 * 27 8 7
45 45 H 1.09007 * 110.41091 * 277.81211 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.3068 1.1243 0.0000
4 6 3.5348 0.6765 -0.0057
5 7 3.5095 -0.6558 -0.0038
6 6 2.2707 -1.0761 0.0026
7 6 1.8246 -2.5156 0.0061
8 7 1.6858 -2.9818 1.3923
9 6 3.0133 -3.1063 2.0475
10 6 2.7760 -4.0748 3.2261
11 6 1.5344 -4.8977 2.8250
12 1 0.7301 -4.7446 3.5446
13 6 1.8884 -6.3834 2.7332
14 7 2.2246 -6.8885 4.0666
15 6 2.5714 -8.1806 4.2299
16 8 2.6048 -8.9252 3.2732
17 6 2.9167 -8.7005 5.6017
18 16 3.3355 -10.4580 5.4931
19 6 3.6853 -10.7944 7.1868
20 1 3.6058 -10.0067 7.9215
21 6 4.0640 -12.0716 7.5769
22 7 4.1613 -13.0314 6.6815
23 14 4.4354 -12.4281 9.3725
24 1 4.2542 -11.1891 10.1710
25 1 3.5108 -13.4780 9.8703
26 1 5.8372 -12.9002 9.5038
27 6 1.1259 -4.3571 1.4378
28 1 -0.3633 0.0031 1.0276
29 1 -0.3633 0.8886 -0.5164
30 1 -0.3634 -0.8914 -0.5112
31 1 4.4255 1.2873 -0.0116
32 1 2.5648 -3.1266 -0.5103
33 1 0.8647 -2.5997 -0.5033
34 1 3.3487 -2.1362 2.4142
35 1 3.7439 -3.5230 1.3541
36 1 2.5806 -3.5164 4.1416
37 1 3.6373 -4.7297 3.3593
38 1 2.7432 -6.5128 2.0694
39 1 1.0356 -6.9364 2.3395
40 1 2.1982 -6.2930 4.8317
41 1 3.7690 -8.1472 5.9960
42 1 2.0614 -8.5715 6.2650
43 1 4.4256 -13.9241 6.9542
44 1 1.5595 -4.9704 0.6480
45 1 0.0401 -4.3287 1.3456
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714625377.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:57
Heat of formation + Delta-G solvation = 60.122219 kcal
Electronic energy + Delta-G solvation = -25804.735545 eV
Core-core repulsion = 21985.478476 eV
Total energy + Delta-G solvation = -3819.257068 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.50684 -39.88070 -38.80019 -35.34115 -34.46458 -33.12159 -32.43372 -31.20551
-30.03943 -29.00547 -27.94166 -26.64534 -25.51471 -24.52390 -22.44683 -22.03250
-20.92582 -20.24796 -20.20513 -17.87410 -17.34996 -16.91567 -16.71169 -16.28497
-15.85165 -15.46230 -15.23737 -15.18486 -14.80980 -14.59080 -14.52944 -13.91835
-13.69791 -13.60356 -13.50362 -13.21327 -13.04301 -12.69894 -12.57714 -12.39727
-12.06763 -11.94760 -11.91230 -11.53228 -11.15255 -11.07151 -11.02431 -10.84794
-10.75458 -10.41139 -10.13380 -10.02083 -9.81052 -9.42537 -9.09779 -9.08259
-8.90319 -8.23748 -6.50544 -6.22372 -3.92778 1.15306 1.88479 2.50266
3.01158 3.08921 3.21267 3.27345 3.31468 3.40603 3.69676 3.73312
4.03302 4.14310 4.19904 4.27513 4.44389 4.47619 4.56742 4.67164
4.84785 4.90210 4.95614 5.02475 5.09179 5.11843 5.13023 5.21724
5.24378 5.33621 5.52990 5.56258 5.64745 5.73968 5.82282 5.85052
5.88936 5.93740 6.03836 6.13521 6.23821 6.31463 6.38998 6.59747
7.59443 7.69049 7.70144 8.34932 8.60067 9.23210 10.85116
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.033796 B = 0.001594 C = 0.001569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 828.300891 B =17564.059942 C =17845.289575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.370 5.370
3 N -0.323 5.323
4 C 0.199 3.801
5 N -0.540 5.540
6 C 0.289 3.711
7 C 0.119 3.881
8 N -0.508 5.508
9 C 0.038 3.962
10 C -0.125 4.125
11 C -0.102 4.102
12 H 0.089 0.911
13 C 0.129 3.871
14 N -0.738 5.738
15 C 0.532 3.468
16 O -0.518 6.518
17 C -0.154 4.154
18 S -0.061 6.061
19 C -0.535 4.535
20 H 0.073 0.927
21 C 0.073 3.927
22 N -0.867 5.867
23 Si 0.919 3.081
24 H -0.272 1.272
25 H -0.280 1.280
26 H -0.280 1.280
27 C 0.042 3.958
28 H 0.084 0.916
29 H 0.090 0.910
30 H 0.091 0.909
31 H 0.217 0.783
32 H 0.079 0.921
33 H 0.098 0.902
34 H 0.080 0.920
35 H 0.055 0.945
36 H 0.073 0.927
37 H 0.079 0.921
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.398 0.602
41 H 0.089 0.911
42 H 0.089 0.911
43 H 0.268 0.732
44 H 0.057 0.943
45 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.397 27.452 -13.201 31.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.044 4.044
2 N -0.160 5.160
3 N -0.151 5.151
4 C -0.103 4.103
5 N -0.268 5.268
6 C 0.012 3.988
7 C -0.012 4.012
8 N -0.233 5.233
9 C -0.089 4.089
10 C -0.163 4.163
11 C -0.121 4.121
12 H 0.107 0.893
13 C 0.004 3.996
14 N -0.393 5.393
15 C 0.318 3.682
16 O -0.392 6.392
17 C -0.304 4.304
18 S 0.166 5.834
19 C -0.683 4.683
20 H 0.091 0.909
21 C -0.136 4.136
22 N -0.503 5.503
23 Si 0.745 3.255
24 H -0.196 1.196
25 H -0.206 1.206
26 H -0.206 1.206
27 C -0.086 4.086
28 H 0.103 0.897
29 H 0.109 0.891
30 H 0.110 0.890
31 H 0.234 0.766
32 H 0.097 0.903
33 H 0.117 0.883
34 H 0.099 0.901
35 H 0.073 0.927
36 H 0.092 0.908
37 H 0.097 0.903
38 H 0.084 0.916
39 H 0.086 0.914
40 H 0.232 0.768
41 H 0.108 0.892
42 H 0.108 0.892
43 H 0.078 0.922
44 H 0.075 0.925
45 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -8.653 26.977 -14.601 31.872
hybrid contribution 0.560 0.403 2.186 2.292
sum -8.093 27.380 -12.415 31.133
Atomic orbital electron populations
1.21959 0.73605 1.04576 1.04295 1.50196 1.08082 1.03852 1.53887
1.78065 1.02203 1.08204 1.26636 1.25960 0.95787 0.90377 0.98214
1.70489 1.19556 1.11616 1.25128 1.23995 0.86194 0.92198 0.96443
1.20667 1.02100 0.86343 0.92064 1.65420 1.21539 1.23189 1.13165
1.23126 0.89699 1.00164 0.95937 1.22454 0.97935 0.97481 0.98393
1.22121 0.98717 0.93874 0.97402 0.89280 1.21318 1.00837 0.92098
0.85324 1.45975 1.72200 1.11192 1.09923 1.20308 0.75806 0.81089
0.91019 1.90703 1.50594 1.56091 1.41849 1.23532 1.04432 1.06543
0.95917 1.85395 1.88393 0.97191 1.12462 1.22913 1.53577 0.98618
0.93238 0.90866 1.24994 0.94804 0.95104 0.98699 1.70028 1.44632
1.02085 1.33531 0.86115 0.78124 0.78409 0.82832 1.19620 1.20565
1.20567 1.23092 1.00879 0.87843 0.96785 0.89745 0.89109 0.89022
0.76636 0.90290 0.88348 0.90127 0.92694 0.90799 0.90279 0.91582
0.91435 0.76783 0.89230 0.89225 0.92236 0.92514 0.89250
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.39 11.33 59.85 0.68 1.07 16
2 N -0.37 -3.01 4.04 -65.10 -0.26 -3.27 16
3 N -0.32 -3.21 12.70 29.29 0.37 -2.84 16
4 C 0.20 1.81 13.03 -91.80 -1.20 0.61 16
5 N -0.54 -5.47 11.19 -11.97 -0.13 -5.60 16
6 C 0.29 2.46 6.98 -155.70 -1.09 1.37 16
7 C 0.12 0.72 5.14 -4.98 -0.03 0.70 16
8 N -0.51 -3.45 5.36 -231.41 -1.24 -4.70 16
9 C 0.04 0.31 5.97 -2.18 -0.01 0.29 16
10 C -0.12 -0.94 6.33 -25.35 -0.16 -1.10 16
11 C -0.10 -0.73 3.13 -89.24 -0.28 -1.01 16
12 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16
13 C 0.13 1.33 4.76 -4.04 -0.02 1.31 16
14 N -0.74 -9.18 5.32 -60.30 -0.32 -9.50 16
15 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16
16 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16
17 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16
18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16
19 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16
20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16
21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
22 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16
23 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16
24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16
25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
27 C 0.04 0.25 6.03 -2.18 -0.01 0.24 16
28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16
30 H 0.09 0.15 7.10 -51.93 -0.37 -0.22 16
31 H 0.22 1.19 8.06 -52.49 -0.42 0.76 16
32 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16
33 H 0.10 0.35 7.11 -51.93 -0.37 -0.02 16
34 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16
35 H 0.05 0.47 7.83 -51.93 -0.41 0.06 16
36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
37 H 0.08 0.67 7.63 -51.92 -0.40 0.27 16
38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.40 3.87 8.32 -40.82 -0.34 3.53 16
41 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16
42 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16
43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
44 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16
45 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16
LS Contribution 389.98 15.07 5.88 5.88
Total: -1.00 -37.46 389.98 -10.79 -48.25
By element:
Atomic # 1 Polarization: 5.74 SS G_CDS: -6.88 Total: -1.15 kcal
Atomic # 6 Polarization: -0.92 SS G_CDS: -1.78 Total: -2.70 kcal
Atomic # 7 Polarization: -50.41 SS G_CDS: -0.85 Total: -51.26 kcal
Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal
Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal
Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -37.46 -10.79 -48.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714625377.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.373 kcal
(2) G-P(sol) polarization free energy of solvation -37.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.122 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds