Wall clock time and date at job start Tue Mar 31 2020 22:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40440 * 126.82145 * 2 1 4 4 C 1.30714 * 106.79171 * 180.02562 * 3 2 1 5 5 N 1.33245 * 108.94800 * 359.75924 * 4 3 2 6 6 C 1.30837 * 109.82491 * 0.40617 * 5 4 3 7 7 C 1.50697 * 125.96047 * 179.86247 * 6 5 4 8 8 N 1.46900 * 109.47409 * 269.69007 * 7 6 5 9 9 C 1.47907 * 110.99845 * 69.87233 * 8 7 6 10 10 C 1.53990 * 107.05675 * 145.84878 * 9 8 7 11 11 C 1.54597 * 105.14143 * 358.77466 * 10 9 8 12 12 H 1.09000 * 110.72471 * 96.39833 * 11 10 9 13 13 C 1.52999 * 110.72690 * 219.68730 * 11 10 9 14 14 N 1.46505 * 109.47197 * 293.54752 * 13 11 10 15 15 C 1.34775 * 120.00221 * 180.02562 * 14 13 11 16 16 O 1.21277 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00025 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47273 * 179.97438 * 17 15 14 19 19 C 1.76193 * 99.99953 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00356 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00202 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00838 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99585 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47048 * 90.00186 * 23 21 19 25 25 H 1.48500 * 109.47345 * 210.00084 * 23 21 19 26 26 H 1.48497 * 109.47304 * 330.00253 * 23 21 19 27 27 C 1.48529 * 111.00554 * 187.27070 * 8 7 6 28 28 H 1.08999 * 109.47540 * 269.95400 * 1 2 3 29 29 H 1.09000 * 109.47005 * 29.95958 * 1 2 3 30 30 H 1.09003 * 109.47368 * 149.95639 * 1 2 3 31 31 H 1.07995 * 125.52768 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47454 * 149.68941 * 7 6 5 33 33 H 1.09001 * 109.47325 * 29.69008 * 7 6 5 34 34 H 1.08996 * 109.91720 * 26.48982 * 9 8 7 35 35 H 1.09002 * 109.91750 * 265.19957 * 9 8 7 36 36 H 1.09005 * 110.30685 * 239.86077 * 10 9 8 37 37 H 1.09005 * 110.31310 * 117.69074 * 10 9 8 38 38 H 1.09005 * 109.47310 * 53.54426 * 13 11 10 39 39 H 1.08994 * 109.47740 * 173.54257 * 13 11 10 40 40 H 0.97002 * 119.99729 * 359.97438 * 14 13 11 41 41 H 1.09005 * 109.46799 * 299.99820 * 17 15 14 42 42 H 1.09004 * 109.47254 * 59.99646 * 17 15 14 43 43 H 0.96990 * 120.00518 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.67056 * 81.84058 * 27 8 7 45 45 H 1.08999 * 110.66437 * 318.71748 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6765 -0.0006 5 7 3.5096 -0.6557 0.0044 6 6 2.2706 -1.0761 -0.0006 7 6 1.8246 -2.5156 -0.0004 8 7 1.6788 -2.9833 -1.3853 9 6 2.9971 -3.1078 -2.0442 10 6 2.9086 -4.3050 -3.0088 11 6 1.4779 -4.8628 -2.8298 12 1 0.8110 -4.4670 -3.5958 13 6 1.4861 -6.3926 -2.8548 14 7 1.8713 -6.8572 -4.1897 15 6 1.9461 -8.1778 -4.4481 16 8 1.6951 -8.9816 -3.5753 17 6 2.3428 -8.6557 -5.8212 18 16 2.3524 -10.4654 -5.8508 19 6 2.8346 -10.7415 -7.5228 20 1 3.0220 -9.9024 -8.1764 21 6 2.9725 -12.0374 -8.0004 22 7 3.3321 -12.2438 -9.2497 23 14 2.6476 -13.4888 -6.8702 24 1 1.2160 -13.8738 -6.9581 25 1 3.4950 -14.6365 -7.2823 26 1 2.9733 -13.1099 -5.4718 27 6 1.0748 -4.3395 -1.4284 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 4.4254 1.2873 -0.0003 32 1 0.8673 -2.5993 0.5141 33 1 2.5675 -3.1261 0.5130 34 1 3.7699 -3.2890 -1.2973 35 1 3.2212 -2.1981 -2.6012 36 1 3.6459 -5.0618 -2.7410 37 1 3.0601 -3.9749 -4.0365 38 1 2.2010 -6.7641 -2.1205 39 1 0.4907 -6.7653 -2.6135 40 1 2.0717 -6.2143 -4.8879 41 1 1.6285 -8.2837 -6.5557 42 1 3.3386 -8.2834 -6.0618 43 1 3.4289 -13.1493 -9.5833 44 1 -0.0098 -4.2808 -1.3369 45 1 1.4940 -4.9723 -0.6461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714625381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:00 Heat of formation + Delta-G solvation = 59.639672 kcal Electronic energy + Delta-G solvation = -25803.524805 eV Core-core repulsion = 21984.246812 eV Total energy + Delta-G solvation = -3819.277993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.52478 -39.92001 -38.92307 -35.40863 -34.48501 -33.18974 -32.44545 -31.25595 -30.14462 -29.11805 -27.97479 -26.67453 -25.63446 -24.60541 -22.45632 -21.95076 -21.08860 -20.36271 -20.25953 -17.90664 -17.36192 -16.88281 -16.83093 -16.40360 -15.91979 -15.48008 -15.30443 -15.22739 -14.96554 -14.72783 -14.33232 -13.85441 -13.82120 -13.66389 -13.57818 -13.31249 -13.18263 -12.81170 -12.71557 -12.53217 -12.15501 -12.00161 -11.88966 -11.55168 -11.27235 -11.23502 -11.01478 -10.94271 -10.61169 -10.43536 -10.15834 -10.03207 -9.86554 -9.55489 -9.08468 -9.03217 -8.97892 -8.51205 -6.92784 -6.29549 -4.01469 1.13056 1.87252 2.48033 2.74755 2.95581 3.24899 3.32470 3.39562 3.49789 3.63683 3.68660 4.00111 4.13256 4.22799 4.32537 4.40062 4.45096 4.60663 4.63489 4.73705 4.79640 4.85185 4.93412 4.96135 5.05757 5.09175 5.09729 5.19168 5.25276 5.34038 5.51544 5.55263 5.69765 5.72296 5.77138 5.82490 5.89338 6.00334 6.02028 6.22585 6.29979 6.37158 6.49826 7.57908 7.68180 7.93432 8.40990 8.46635 9.16587 10.79658 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.001612 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.182509 B =17361.702732 C =17632.553700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.369 5.369 3 N -0.323 5.323 4 C 0.199 3.801 5 N -0.540 5.540 6 C 0.289 3.711 7 C 0.121 3.879 8 N -0.515 5.515 9 C 0.041 3.959 10 C -0.130 4.130 11 C -0.101 4.101 12 H 0.092 0.908 13 C 0.131 3.869 14 N -0.736 5.736 15 C 0.531 3.469 16 O -0.520 6.520 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.045 3.955 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.217 0.783 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 26.134 19.620 33.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.160 5.160 3 N -0.151 5.151 4 C -0.104 4.104 5 N -0.268 5.268 6 C 0.011 3.989 7 C -0.009 4.009 8 N -0.240 5.240 9 C -0.087 4.087 10 C -0.168 4.168 11 C -0.121 4.121 12 H 0.111 0.889 13 C 0.006 3.994 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.395 6.395 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.083 4.083 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.234 0.766 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.141 25.618 20.698 33.503 hybrid contribution 0.697 0.047 -0.766 1.036 sum -5.444 25.666 19.933 32.949 Atomic orbital electron populations 1.22004 0.73594 1.05483 1.03700 1.50186 1.08084 1.03822 1.53888 1.78064 1.02209 1.08256 1.26559 1.25953 0.95792 0.90370 0.98236 1.70484 1.19570 1.11634 1.25135 1.24015 0.86198 0.92211 0.96446 1.20679 1.02113 0.86306 0.91845 1.64759 1.21336 1.24650 1.13273 1.22877 0.89683 0.98876 0.97219 1.22548 0.96631 0.97237 1.00379 1.22301 0.97607 0.94334 0.97844 0.88945 1.21247 1.01064 0.91923 0.85135 1.45922 1.72372 1.07274 1.13451 1.20275 0.76434 0.81688 0.89940 1.90699 1.47741 1.53721 1.47330 1.23281 1.05009 1.03176 0.96037 1.84782 1.90847 0.97766 1.18190 1.22318 1.53527 0.96972 0.94133 0.89381 1.24713 0.93317 0.98410 0.94859 1.69934 1.45270 1.22231 1.14232 0.86734 0.79434 0.82422 0.83248 1.19216 1.19938 1.15932 1.23199 1.00546 0.87939 0.96619 0.90291 0.88906 0.88326 0.76649 0.88316 0.90311 0.92431 0.90459 0.90575 0.90612 0.91494 0.91321 0.76624 0.88500 0.88459 0.91936 0.89145 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.16 59.85 0.67 1.03 16 2 N -0.37 -2.94 4.04 -65.10 -0.26 -3.20 16 3 N -0.32 -3.16 12.70 29.29 0.37 -2.79 16 4 C 0.20 1.77 13.03 -91.81 -1.20 0.57 16 5 N -0.54 -5.31 11.19 -11.97 -0.13 -5.44 16 6 C 0.29 2.37 6.99 -155.69 -1.09 1.28 16 7 C 0.12 0.69 4.89 -4.98 -0.02 0.66 16 8 N -0.52 -3.25 5.26 -231.90 -1.22 -4.47 16 9 C 0.04 0.30 6.17 -2.75 -0.02 0.29 16 10 C -0.13 -0.90 6.20 -25.38 -0.16 -1.06 16 11 C -0.10 -0.67 3.13 -88.76 -0.28 -0.95 16 12 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 13 C 0.13 1.24 5.00 -4.04 -0.02 1.22 16 14 N -0.74 -8.54 5.40 -60.29 -0.33 -8.87 16 15 C 0.53 9.03 7.85 -10.99 -0.09 8.94 16 16 O -0.52 -10.90 15.86 5.56 0.09 -10.81 16 17 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 18 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 19 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 23 Si 0.86 21.67 27.74 -169.99 -4.71 16.95 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 C 0.04 0.24 5.98 -1.90 -0.01 0.23 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.24 7.72 -51.93 -0.40 -0.16 16 31 H 0.22 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.10 0.32 7.73 -51.93 -0.40 -0.08 16 33 H 0.08 0.45 7.82 -51.93 -0.41 0.05 16 34 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.59 7.80 -51.93 -0.41 0.18 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.40 3.61 8.33 -40.82 -0.34 3.27 16 41 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.30 7.93 -51.93 -0.41 -0.11 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -37.01 388.38 -10.32 -47.33 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.98 Total: -1.48 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.77 Total: -1.84 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.79 Total: -50.44 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.01 -10.32 -47.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714625381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.972 kcal (2) G-P(sol) polarization free energy of solvation -37.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds