Wall clock time and date at job start Tue Mar 31 2020 22:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40440 * 126.82145 * 2 1 4 4 C 1.30714 * 106.79171 * 180.02562 * 3 2 1 5 5 N 1.33245 * 108.94800 * 359.75924 * 4 3 2 6 6 C 1.30837 * 109.82491 * 0.40617 * 5 4 3 7 7 C 1.50697 * 125.96047 * 179.86247 * 6 5 4 8 8 N 1.46900 * 109.47409 * 269.69007 * 7 6 5 9 9 C 1.47907 * 110.99845 * 69.87233 * 8 7 6 10 10 C 1.53990 * 107.05675 * 145.84878 * 9 8 7 11 11 C 1.54597 * 105.14143 * 358.77466 * 10 9 8 12 12 H 1.09000 * 110.72471 * 96.39833 * 11 10 9 13 13 C 1.52999 * 110.72690 * 219.68730 * 11 10 9 14 14 N 1.46505 * 109.47197 * 293.54752 * 13 11 10 15 15 C 1.34775 * 120.00221 * 180.02562 * 14 13 11 16 16 O 1.21277 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00025 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47273 * 179.97438 * 17 15 14 19 19 C 1.76193 * 99.99953 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00356 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00202 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00838 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99585 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47048 * 90.00186 * 23 21 19 25 25 H 1.48500 * 109.47345 * 210.00084 * 23 21 19 26 26 H 1.48497 * 109.47304 * 330.00253 * 23 21 19 27 27 C 1.48529 * 111.00554 * 187.27070 * 8 7 6 28 28 H 1.08999 * 109.47540 * 269.95400 * 1 2 3 29 29 H 1.09000 * 109.47005 * 29.95958 * 1 2 3 30 30 H 1.09003 * 109.47368 * 149.95639 * 1 2 3 31 31 H 1.07995 * 125.52768 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47454 * 149.68941 * 7 6 5 33 33 H 1.09001 * 109.47325 * 29.69008 * 7 6 5 34 34 H 1.08996 * 109.91720 * 26.48982 * 9 8 7 35 35 H 1.09002 * 109.91750 * 265.19957 * 9 8 7 36 36 H 1.09005 * 110.30685 * 239.86077 * 10 9 8 37 37 H 1.09005 * 110.31310 * 117.69074 * 10 9 8 38 38 H 1.09005 * 109.47310 * 53.54426 * 13 11 10 39 39 H 1.08994 * 109.47740 * 173.54257 * 13 11 10 40 40 H 0.97002 * 119.99729 * 359.97438 * 14 13 11 41 41 H 1.09005 * 109.46799 * 299.99820 * 17 15 14 42 42 H 1.09004 * 109.47254 * 59.99646 * 17 15 14 43 43 H 0.96990 * 120.00518 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.67056 * 81.84058 * 27 8 7 45 45 H 1.08999 * 110.66437 * 318.71748 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6765 -0.0006 5 7 3.5096 -0.6557 0.0044 6 6 2.2706 -1.0761 -0.0006 7 6 1.8246 -2.5156 -0.0004 8 7 1.6788 -2.9833 -1.3853 9 6 2.9971 -3.1078 -2.0442 10 6 2.9086 -4.3050 -3.0088 11 6 1.4779 -4.8628 -2.8298 12 1 0.8110 -4.4670 -3.5958 13 6 1.4861 -6.3926 -2.8548 14 7 1.8713 -6.8572 -4.1897 15 6 1.9461 -8.1778 -4.4481 16 8 1.6951 -8.9816 -3.5753 17 6 2.3428 -8.6557 -5.8212 18 16 2.3524 -10.4654 -5.8508 19 6 2.8346 -10.7415 -7.5228 20 1 3.0220 -9.9024 -8.1764 21 6 2.9725 -12.0374 -8.0004 22 7 3.3321 -12.2438 -9.2497 23 14 2.6476 -13.4888 -6.8702 24 1 1.2160 -13.8738 -6.9581 25 1 3.4950 -14.6365 -7.2823 26 1 2.9733 -13.1099 -5.4718 27 6 1.0748 -4.3395 -1.4284 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 4.4254 1.2873 -0.0003 32 1 0.8673 -2.5993 0.5141 33 1 2.5675 -3.1261 0.5130 34 1 3.7699 -3.2890 -1.2973 35 1 3.2212 -2.1981 -2.6012 36 1 3.6459 -5.0618 -2.7410 37 1 3.0601 -3.9749 -4.0365 38 1 2.2010 -6.7641 -2.1205 39 1 0.4907 -6.7653 -2.6135 40 1 2.0717 -6.2143 -4.8879 41 1 1.6285 -8.2837 -6.5557 42 1 3.3386 -8.2834 -6.0618 43 1 3.4289 -13.1493 -9.5833 44 1 -0.0098 -4.2808 -1.3369 45 1 1.4940 -4.9723 -0.6461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714625381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:59 Heat of formation + Delta-G solvation = 32.593140 kcal Electronic energy + Delta-G solvation = -25804.697631 eV Core-core repulsion = 21984.246812 eV Total energy + Delta-G solvation = -3820.450819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10359 -40.84055 -39.86575 -36.30490 -35.03045 -34.66340 -33.96328 -32.07454 -31.02541 -30.05381 -28.46342 -27.86286 -27.21556 -25.36416 -23.03484 -22.56970 -21.73796 -21.49165 -20.85416 -19.84017 -17.95838 -17.78252 -17.60292 -17.38528 -17.10580 -16.78194 -16.49349 -16.07214 -15.84000 -15.64867 -15.35139 -14.91070 -14.85869 -14.62371 -14.59004 -14.07481 -14.02273 -13.77079 -13.45661 -13.33973 -13.22137 -13.13452 -12.99470 -12.66910 -12.59894 -12.41602 -12.08620 -11.90762 -11.84757 -11.50826 -11.16129 -11.07190 -10.98920 -10.76431 -10.57653 -10.52364 -10.09849 -9.56748 -8.98182 -8.50563 -6.21282 0.55411 1.00862 1.32374 1.41902 1.48035 1.57620 1.59715 1.87003 2.24138 2.28340 2.72849 2.87710 2.88017 3.18765 3.53213 3.62060 3.66367 3.85407 3.88756 3.97211 4.23668 4.24969 4.28608 4.40001 4.40285 4.41277 4.49323 4.51275 4.59790 4.69300 4.70880 4.73931 4.81804 4.97531 5.05402 5.17438 5.25346 5.30524 5.44272 5.45953 5.71532 5.72801 5.79687 5.89887 6.12395 6.49212 6.94656 7.08570 7.22167 8.61771 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.001612 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.182509 B =17361.702732 C =17632.553700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.371 5.371 3 N -0.352 5.352 4 C 0.191 3.809 5 N -0.570 5.570 6 C 0.284 3.716 7 C 0.123 3.877 8 N -0.516 5.516 9 C 0.047 3.953 10 C -0.128 4.128 11 C -0.089 4.089 12 H 0.101 0.899 13 C 0.132 3.868 14 N -0.711 5.711 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.113 4.113 18 S -0.176 6.176 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.045 3.955 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.236 1.236 27 C 0.048 3.952 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.239 0.761 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.415 0.585 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.110 0.890 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 26.863 21.001 34.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.162 5.162 3 N -0.181 5.181 4 C -0.112 4.112 5 N -0.299 5.299 6 C 0.006 3.994 7 C -0.007 4.007 8 N -0.241 5.241 9 C -0.081 4.081 10 C -0.166 4.166 11 C -0.109 4.109 12 H 0.120 0.880 13 C 0.008 3.992 14 N -0.364 5.364 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.264 4.264 18 S 0.051 5.949 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.160 4.160 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.160 1.160 27 C -0.079 4.079 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.255 0.745 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.252 0.748 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.474 26.407 22.069 35.217 hybrid contribution 1.093 0.018 -1.191 1.617 sum -6.381 26.424 20.878 34.276 Atomic orbital electron populations 1.22326 0.71496 1.06425 1.05205 1.50444 1.09277 1.03253 1.53211 1.77988 1.02825 1.09667 1.27609 1.26471 0.96462 0.90508 0.97731 1.70472 1.20917 1.12216 1.26271 1.24435 0.85991 0.93177 0.95756 1.20820 1.03570 0.84710 0.91616 1.64741 1.20487 1.25140 1.13696 1.22737 0.90216 0.98168 0.96971 1.22518 0.96694 0.96845 1.00530 1.22199 0.97534 0.91987 0.99166 0.88031 1.21383 1.00713 0.93765 0.83336 1.45714 1.70191 1.05569 1.14942 1.19896 0.76419 0.83100 0.88504 1.90690 1.50187 1.55205 1.48122 1.23285 1.06634 0.98225 0.98223 1.84690 1.90758 1.04005 1.15469 1.22475 1.53129 0.96425 0.95718 0.91991 1.25573 0.93170 1.01062 0.96216 1.70014 1.46423 1.23254 1.15824 0.85859 0.79677 0.79536 0.81248 1.18660 1.18424 1.16021 1.23246 1.01668 0.87318 0.95704 0.88491 0.88810 0.86551 0.74484 0.85394 0.90406 0.93397 0.92112 0.91355 0.90174 0.92194 0.91304 0.74770 0.86861 0.86952 0.91394 0.87138 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.16 127.77 1.43 1.91 16 2 N -0.37 -5.44 4.04 -359.87 -1.45 -6.89 16 3 N -0.35 -6.74 12.70 -61.25 -0.78 -7.51 16 4 C 0.19 3.34 13.03 180.76 2.36 5.70 16 5 N -0.57 -11.00 11.19 -191.78 -2.15 -13.14 16 6 C 0.28 4.31 6.99 138.22 0.97 5.27 16 7 C 0.12 1.12 4.89 85.56 0.42 1.54 16 8 N -0.52 -5.26 5.26 -887.59 -4.66 -9.92 16 9 C 0.05 0.63 6.17 86.44 0.53 1.17 16 10 C -0.13 -1.52 6.20 31.47 0.20 -1.33 16 11 C -0.09 -0.92 3.13 -9.59 -0.03 -0.95 16 12 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 13 C 0.13 2.17 5.00 86.38 0.43 2.60 16 14 N -0.71 -14.72 5.40 -463.06 -2.50 -17.22 16 15 C 0.54 17.29 7.85 87.66 0.69 17.98 16 16 O -0.56 -23.01 15.86 -3.02 -0.05 -23.05 16 17 C -0.11 -4.09 6.16 71.23 0.44 -3.65 16 18 S -0.18 -8.74 18.55 -56.49 -1.05 -9.79 16 19 C -0.53 -30.62 10.04 67.95 0.68 -29.94 16 20 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 21 C 0.05 2.64 5.50 84.86 0.47 3.10 16 22 N -0.92 -55.62 13.97 21.65 0.30 -55.31 16 23 Si 0.91 44.68 27.74 68.60 1.90 46.58 16 24 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.50 6.74 99.48 0.67 -10.83 16 27 C 0.05 0.37 5.98 86.65 0.52 0.89 16 28 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.12 0.22 7.72 -2.39 -0.02 0.20 16 31 H 0.24 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.13 0.39 7.73 -2.39 -0.02 0.37 16 33 H 0.08 0.75 7.82 -2.39 -0.02 0.73 16 34 H 0.05 0.74 7.57 -2.39 -0.02 0.72 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 0.95 7.80 -2.38 -0.02 0.93 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 1.13 8.08 -2.38 -0.02 1.11 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.42 6.22 8.33 -92.71 -0.77 5.45 16 41 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.28 15.51 8.31 -92.72 -0.77 14.74 16 44 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.06 0.46 7.93 -2.39 -0.02 0.44 16 Total: -1.00 -81.11 388.38 -1.15 -82.26 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.19 Total: 9.72 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 9.09 Total: 4.28 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -11.24 Total: -110.00 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -81.11 -1.15 -82.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714625381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.855 kcal (2) G-P(sol) polarization free energy of solvation -81.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds