Wall clock time and date at job start Tue Mar 31 2020 22:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35312 * 125.86840 * 2 1 4 4 C 1.35345 * 106.17697 * 180.11809 * 3 2 1 5 5 C 1.50697 * 126.75409 * 179.85361 * 4 3 2 6 6 N 1.46901 * 109.47003 * 94.71529 * 5 4 3 7 7 C 1.48554 * 110.99852 * 290.12331 * 6 5 4 8 8 C 1.54383 * 104.59576 * 200.96010 * 7 6 5 9 9 C 1.54259 * 105.05950 * 23.85952 * 8 7 6 10 10 H 1.09009 * 110.32168 * 241.00197 * 9 8 7 11 11 C 1.52997 * 110.32700 * 118.89546 * 9 8 7 12 12 N 1.46497 * 109.46983 * 66.45289 * 11 9 8 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47156 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00049 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00026 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99640 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47282 * 59.99711 * 21 19 17 23 23 H 1.48497 * 109.47200 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47280 * 300.00084 * 21 19 17 25 25 C 1.48564 * 110.99610 * 174.70879 * 6 5 4 26 26 N 1.33775 * 106.49632 * 359.59388 * 4 3 2 27 27 N 1.28639 * 108.88162 * 0.25915 * 26 4 3 28 28 H 1.09006 * 109.47053 * 270.32366 * 1 2 3 29 29 H 1.09000 * 109.47105 * 30.32157 * 1 2 3 30 30 H 1.09003 * 109.47447 * 150.32457 * 1 2 3 31 31 H 1.07998 * 126.91514 * 359.97438 * 3 2 1 32 32 H 1.08991 * 109.47243 * 334.71146 * 5 4 3 33 33 H 1.09001 * 109.47124 * 214.71285 * 5 4 3 34 34 H 1.09003 * 110.41081 * 82.18228 * 7 6 5 35 35 H 1.09001 * 110.51574 * 319.79365 * 7 6 5 36 36 H 1.09002 * 110.32453 * 264.95749 * 8 7 6 37 37 H 1.09008 * 110.40963 * 142.79307 * 8 7 6 38 38 H 1.09001 * 109.46832 * 306.45106 * 11 9 8 39 39 H 1.09002 * 109.47153 * 186.45297 * 11 9 8 40 40 H 0.96995 * 120.00423 * 359.97438 * 12 11 9 41 41 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 42 42 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 43 43 H 0.97010 * 119.99946 * 180.02562 * 20 19 17 44 44 H 1.08991 * 110.41459 * 40.26239 * 25 6 5 45 45 H 1.09007 * 110.41091 * 277.81211 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 -0.0027 5 6 4.7879 1.4734 -0.0069 6 7 5.2624 1.6508 1.3721 7 6 4.3500 2.5374 2.1391 8 6 5.2076 3.0560 3.3134 9 6 6.6667 2.9391 2.8263 10 1 7.2285 2.2643 3.4724 11 6 7.3288 4.3180 2.7955 12 7 7.4583 4.8282 4.1627 13 6 8.0167 6.0352 4.3814 14 8 8.4124 6.6987 3.4465 15 6 8.1505 6.5598 5.7878 16 16 8.9337 8.1912 5.7513 17 6 8.9647 8.5543 7.4751 18 1 8.5657 7.8438 8.1839 19 6 9.5009 9.7541 7.9221 20 7 9.9866 10.6202 7.0582 21 14 9.5331 10.1394 9.7496 22 1 10.3272 9.1049 10.4597 23 1 10.1516 11.4724 9.9636 24 1 8.1454 10.1475 10.2783 25 6 6.5678 2.3596 1.3988 26 7 3.4576 -0.6952 0.0049 27 7 2.2191 -1.0430 0.0063 28 1 -0.3633 0.0058 1.0277 29 1 -0.3633 0.8871 -0.5188 30 1 -0.3634 -0.8929 -0.5088 31 1 1.9382 2.1281 -0.0004 32 1 4.5761 2.4480 -0.4464 33 1 5.5562 0.9696 -0.5934 34 1 3.4960 1.9724 2.5125 35 1 4.0133 3.3679 1.5185 36 1 5.0528 2.4374 4.1974 37 1 4.9638 4.0957 3.5321 38 1 6.7159 5.0023 2.2088 39 1 8.3171 4.2365 2.3430 40 1 7.1415 4.2977 4.9104 41 1 7.1624 6.6408 6.2409 42 1 8.7640 5.8756 6.3740 43 1 10.3617 11.4586 7.3705 44 1 6.5800 3.1619 0.6612 45 1 7.3838 1.6605 1.2150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714626748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:40 Heat of formation + Delta-G solvation = 39.201784 kcal Electronic energy + Delta-G solvation = -25601.492601 eV Core-core repulsion = 21781.328354 eV Total energy + Delta-G solvation = -3820.164247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.20056 -40.83521 -39.82971 -36.40989 -35.51259 -34.57223 -33.85057 -31.90869 -30.88866 -29.97356 -28.82365 -27.70394 -27.19161 -25.33311 -23.02062 -22.88275 -21.92242 -21.44213 -20.96382 -19.78533 -18.08037 -17.76115 -17.62460 -17.51571 -16.97446 -16.86367 -16.44886 -16.19993 -15.95195 -15.76793 -15.25855 -14.94280 -14.66742 -14.43957 -14.38379 -14.06579 -13.78798 -13.73669 -13.34671 -13.15681 -13.11404 -13.03987 -12.85483 -12.61939 -12.56627 -12.46454 -12.13855 -11.87396 -11.73720 -11.68552 -11.43859 -11.11690 -11.00188 -10.93272 -10.26461 -10.24413 -10.08362 -9.41648 -8.65083 -8.33240 -6.11221 0.64652 1.28453 1.44881 1.45611 1.48757 1.58258 1.59439 1.64254 2.27504 2.32426 3.00848 3.09980 3.32938 3.35205 3.68500 3.73476 3.76076 3.87577 4.04875 4.06246 4.16009 4.30755 4.32389 4.33451 4.42203 4.43124 4.50489 4.53698 4.63855 4.66607 4.71730 4.74292 4.79540 4.93186 4.99395 5.08532 5.15530 5.22163 5.28396 5.42910 5.48511 5.68819 5.87308 6.02659 6.20855 6.53378 7.08008 7.27235 7.53319 8.75652 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.001563 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.226944 B =17909.907083 C =18361.086403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.288 5.288 3 C -0.032 4.032 4 C -0.027 4.027 5 C 0.132 3.868 6 N -0.519 5.519 7 C 0.037 3.963 8 C -0.121 4.121 9 C -0.091 4.091 10 H 0.094 0.906 11 C 0.132 3.868 12 N -0.711 5.711 13 C 0.534 3.466 14 O -0.567 6.567 15 C -0.130 4.130 16 S -0.151 6.151 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.044 3.956 26 N -0.298 5.298 27 N -0.127 5.127 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.226 0.774 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.059 0.941 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.548 -21.530 -13.188 33.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.081 5.081 3 C -0.185 4.185 4 C -0.167 4.167 5 C 0.002 3.998 6 N -0.243 5.243 7 C -0.090 4.090 8 C -0.159 4.159 9 C -0.110 4.110 10 H 0.112 0.888 11 C 0.008 3.992 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.282 4.282 16 S 0.076 5.924 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.084 4.084 26 N -0.164 5.164 27 N -0.106 5.106 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.124 0.876 31 H 0.243 0.757 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.252 0.748 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.821 -22.418 -14.570 33.887 hybrid contribution -0.537 1.293 1.820 2.296 sum -21.358 -21.125 -12.749 32.634 Atomic orbital electron populations 1.22733 0.69943 1.07777 1.06592 1.47651 1.10969 1.04295 1.45224 1.23951 0.90105 0.96016 1.08386 1.22062 0.96135 0.90865 1.07635 1.20408 0.91729 0.97259 0.90406 1.65362 1.02903 1.43821 1.12221 1.23099 0.95997 0.94753 0.95173 1.22405 0.93257 1.01732 0.98521 1.22013 0.96827 0.94318 0.97864 0.88801 1.21425 1.00652 0.94446 0.82718 1.45730 1.62216 1.18179 1.10334 1.20037 0.76656 0.81475 0.89888 1.90692 1.49578 1.58689 1.45586 1.23380 1.05895 1.01629 0.97246 1.85559 1.78800 1.16558 1.11513 1.23188 1.47005 1.07340 0.92096 0.89903 1.26113 0.93792 0.94780 1.04369 1.70177 1.38474 1.09278 1.36791 0.85015 0.79129 0.77646 0.76275 1.18725 1.20415 1.18647 1.23049 0.92477 0.97222 0.95651 1.75010 1.10179 1.13961 1.17212 1.78257 0.96703 1.13717 1.21966 0.87633 0.85108 0.87604 0.75736 0.90392 0.89362 0.90954 0.92374 0.90394 0.90717 0.92159 0.92185 0.74752 0.87155 0.87313 0.92006 0.92319 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.07 11.39 127.77 1.46 1.52 16 2 N -0.29 -3.46 3.74 -369.23 -1.38 -4.84 16 3 C -0.03 -0.33 11.40 83.49 0.95 0.62 16 4 C -0.03 -0.45 6.29 41.59 0.26 -0.19 16 5 C 0.13 1.79 5.38 85.56 0.46 2.25 16 6 N -0.52 -7.81 5.36 -886.04 -4.75 -12.56 16 7 C 0.04 0.47 5.85 86.45 0.51 0.97 16 8 C -0.12 -1.57 6.33 31.49 0.20 -1.37 16 9 C -0.09 -1.28 3.13 -9.90 -0.03 -1.32 16 10 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 11 C 0.13 2.65 4.76 86.38 0.41 3.06 16 12 N -0.71 -16.74 5.32 -463.06 -2.46 -19.20 16 13 C 0.53 19.08 7.85 87.66 0.69 19.76 16 14 O -0.57 -25.78 15.86 -3.03 -0.05 -25.83 16 15 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 16 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 17 C -0.55 -31.14 9.50 67.96 0.65 -30.49 16 18 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 19 C 0.01 0.81 5.49 84.86 0.47 1.28 16 20 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 21 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 C 0.04 0.60 6.03 86.45 0.52 1.12 16 26 N -0.30 -7.18 12.41 -48.60 -0.60 -7.78 16 27 N -0.13 -2.71 13.16 37.02 0.49 -2.23 16 28 H 0.11 -0.14 8.14 -2.38 -0.02 -0.16 16 29 H 0.13 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.11 0.04 8.14 -2.39 -0.02 0.03 16 31 H 0.23 0.35 8.06 -2.91 -0.02 0.33 16 32 H 0.08 0.70 7.88 -2.39 -0.02 0.69 16 33 H 0.09 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.07 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.06 0.59 7.83 -2.39 -0.02 0.57 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.02 7.63 -2.38 -0.02 1.00 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 7.11 8.32 -92.71 -0.77 6.34 16 41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 42 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 43 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 44 H 0.06 0.73 7.71 -2.39 -0.02 0.72 16 45 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -86.71 391.28 -0.41 -87.11 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.23 Total: 12.37 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 6.97 Total: -7.38 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -8.42 Total: -102.04 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -86.71 -0.41 -87.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714626748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.317 kcal (2) G-P(sol) polarization free energy of solvation -86.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds